Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007708.1

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Reverse (-)

2302 .. 3312

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007708.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgaaggaagaagaagtgaatcgatgccagatacaggaatggtaccctaagtttaaatccgtgtctatcaaaacacagattcatgaacttccagaatcctttgttcagtatcttcttgatgattcagggcccttccttcttccagtttccatctcaaatgaagatgcgttacctaacagaattcataatccagaggaggaagatgactatcaagtagtagaaggatctgatgatgagtcagagcagccttcgttgcccccttcttttcctgaacttgagttggagattaaggaatccattgcatcgcttggaggtgctgtgttcccgaagctaaactggagtgcaccaaaagattctgcttggattagcacaacagggactctcaggtgctcttccttcagtgagattgcactgttgctacgatcatctgactcactggtgcatgatttgtgtcatgcgtatgattcctgcaatgacaagacctcctcacggcccaagagcttcttccttgctctccgtaaatggtacccatcccttcagccagagatggaattccgctgctttgtaaggaatcagaatttagttggaatttcccaacgcgaggccacaaccttctacccttctctgcttgaaagcaaagagcatcttggagtgttgcttgaagacttctttatggaaaatttaaggtcaagatttgagtcagaaaattacacctttgatgtgtatgtgacaaaggacgagcgagttaaggttatggatttcaacccttggggagcatttacactgcctctgatgtttacatgggaggaactggaacagaatgataatgaacaaggagatggtgtggacttcagaattgtggagagccagtgtggtgttaggccaggtttgaagacagcagtgccctacgattatgtggacactagctccgggagtggctgggaccagtttttcaggaacgccaatgaagagttacagcgtcaaagtaggtctcctgaagcaggtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

336

Amino Acids

38.54

Weight (kDa)

4.52

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	992
Acc65I	GGTACC	2 cut(s)	42, 525
AccB1I	GGYRCC	2 cut(s)	42, 525
AccII	CGCG	1 cut(s)	600
AciI	CCGC	1 cut(s)	556
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	5 cut(s)	180, 551, 577, 588, 679
AcuI	CTGAAG	3 cut(s)	382, 521, 835
AfaI	GTAC	2 cut(s)	44, 527
AfiI	CCNNNNNNNGG	4 cut(s)	34, 489, 601, 1001
AgsI	TTSAA	4 cut(s)	632, 662, 763, 892
AjnI	CCWGG	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	3 cut(s)	331, 501, 927
AluI	AGCT	3 cut(s)	331, 501, 927
Alw21I	GWGCWC	2 cut(s)	346, 392
Alw26I	GTCTC	1 cut(s)	996
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	4 cut(s)	128, 491, 603, 881
ApaI	GGGCCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	244, 558
ApoI	RAATTY	5 cut(s)	180, 551, 577, 588, 679
Asp718I	GGTACC	2 cut(s)	42, 525
AspS9I	GGNCC	4 cut(s)	128, 129, 492, 943
AsuC2I	CCSGG	1 cut(s)	931
AvaII	GGWCC	1 cut(s)	943
BaeGI	GKGCMC	3 cut(s)	132, 346, 906
BanI	GGYRCC	2 cut(s)	42, 525
BanII	GRGCYC	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	153, 185
BbsI	GAAGAC	2 cut(s)	669, 899
Bbv12I	GWGCWC	2 cut(s)	346, 392
BbvI	GCAGC	2 cut(s)	256, 545
BccI	CCATC	4 cut(s)	158, 538, 541, 833
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	885
BcnI	CCSGG	1 cut(s)	931
BcoDI	GTCTC	1 cut(s)	996
BfaI	CTAG	1 cut(s)	924
BfuAI	ACCTGC	1 cut(s)	992
BisI	GCNGC	2 cut(s)	245, 559
BlsI	GCNGC	2 cut(s)	246, 560
Bme1390I	CCNGG	2 cut(s)	885, 931
Bme18I	GGWCC	1 cut(s)	943
BmgT120I	GGNCC	4 cut(s)	128, 129, 492, 943
BmiI	GGNNCC	4 cut(s)	44, 130, 527, 944
BmrFI	CCNGG	2 cut(s)	885, 931
BmsI	GCATC	4 cut(s)	14, 154, 311, 652
BpiI	GAAGAC	2 cut(s)	669, 899
BpmI	CTGGAG	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	931
Bsa29I	ATCGAT	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	996
BsaJI	CCNNGG	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 489, 601, 1001
Bse1I	ACTGG	6 cut(s)	143, 341, 441, 816, 868, 946
Bse3DI	GCAATG	2 cut(s)	297, 478
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	885
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	530
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	4 cut(s)	34, 489, 601, 1001
BseMI	GCAATG	2 cut(s)	297, 478
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	6 cut(s)	143, 341, 441, 816, 868, 946
BseRI	GAGGAG	2 cut(s)	209, 475
BseSI	GKGCMC	3 cut(s)	132, 346, 906
BseXI	GCAGC	2 cut(s)	256, 545
BseYI	CCCAGC	1 cut(s)	939
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	4 cut(s)	130, 493, 605, 883
BshNI	GGYRCC	2 cut(s)	42, 525
BshVI	ATCGAT	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	346, 392
BsiSI	CCGG	1 cut(s)	930
BslFI	GGGAC	2 cut(s)	391, 956
BslI	CCNNNNNNNGG	4 cut(s)	34, 489, 601, 1001
BsmAI	GTCTC	1 cut(s)	996
BsmFI	GGGAC	2 cut(s)	391, 956
BsnI	GGCC	4 cut(s)	130, 493, 605, 883
Bso31I	GGTCTC	1 cut(s)	996
Bsp120I	GGGCCC	1 cut(s)	128
Bsp1286I	GDGCHC	4 cut(s)	132, 346, 392, 906
Bsp143I	GATC	2 cut(s)	224, 422
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	4 cut(s)	130, 493, 605, 883
BspCNI	CTCAG	1 cut(s)	396
BspDI	ATCGAT	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	4 cut(s)	44, 130, 527, 944
BspMI	ACCTGC	1 cut(s)	992
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	397
BspT107I	GGYRCC	2 cut(s)	42, 525
BspTNI	GGTCTC	1 cut(s)	996
BsrDI	GCAATG	2 cut(s)	297, 478
BsrI	ACTGG	6 cut(s)	143, 341, 441, 816, 868, 946
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	2 cut(s)	224, 422
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	2 cut(s)	397, 963
BstDEI	CTNAG	2 cut(s)	48, 383
BstENI	CCTNNNNNAGG	1 cut(s)	999
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	1 cut(s)	600
BstKTI	GATC	2 cut(s)	227, 425
BstMAI	GTCTC	1 cut(s)	996
BstMBI	GATC	2 cut(s)	224, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	885
BstSCI	CCNGG	2 cut(s)	883, 929
BstSLI	GKGCMC	3 cut(s)	132, 346, 906
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	256, 545
BstV2I	GAAGAC	2 cut(s)	669, 899
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	130, 493, 605, 883
BsuTUI	ATCGAT	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	530
BtsI	GCAGTG	2 cut(s)	782, 906
BtsIMutI	CAGTG	6 cut(s)	406, 410, 434, 782, 875, 906
BveI	ACCTGC	1 cut(s)	992
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	128, 129, 492, 943
ClaI	ATCGAT	1 cut(s)	22
CseI	GACGC	1 cut(s)	968
Csp6I	GTAC	2 cut(s)	43, 526
CviAII	CATG	4 cut(s)	83, 443, 455, 801
CviQI	GTAC	2 cut(s)	43, 526
DdeI	CTNAG	2 cut(s)	48, 383
DpnI	GATC	2 cut(s)	226, 424
DpnII	GATC	2 cut(s)	224, 422
DraI	TTTAAA	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	397, 963
EarI	CTCTTC	2 cut(s)	397, 963
Eco130I	CCWWGG	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	996
Eco47I	GGWCC	1 cut(s)	943
Eco57I	CTGAAG	3 cut(s)	382, 521, 835
EcoNI	CCTNNNNNAGG	1 cut(s)	999
EcoO109I	RGGNCCY	2 cut(s)	128, 129
EcoRI	GAATTC	2 cut(s)	180, 551
EcoRII	CCWGG	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	767
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	767
FaeI	CATG	4 cut(s)	86, 446, 458, 804
FalI	AAGNNNNNCTT	4 cut(s)	488, 520, 630, 662
FaqI	GGGAC	2 cut(s)	391, 956
FatI	CATG	4 cut(s)	82, 442, 454, 800
Fnu4HI	GCNGC	2 cut(s)	245, 559
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	245, 559
FspBI	CTAG	1 cut(s)	924
GluI	GCNGC	2 cut(s)	245, 559
GsaI	CCCAGC	1 cut(s)	943
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	130, 493, 605, 883
HapII	CCGG	1 cut(s)	930
HgaI	GACGC	1 cut(s)	968
Hin1II	CATG	4 cut(s)	86, 446, 458, 804
HpaII	CCGG	1 cut(s)	930
Hpy166II	GTNNAC	4 cut(s)	344, 798, 847, 919
Hpy188I	TCNGA	7 cut(s)	229, 241, 430, 576, 703, 792, 854
Hpy188III	TCNNGA	9 cut(s)	83, 92, 116, 191, 269, 325, 690, 955, 995
Hpy8I	GTNNAC	4 cut(s)	344, 798, 847, 919
HpyAV	CCTTC	9 cut(s)	142, 146, 215, 258, 270, 406, 545, 622, 630
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	5 cut(s)	302, 344, 410, 442, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	48, 383
Hsp92II	CATG	4 cut(s)	86, 446, 458, 804
KpnI	GGTACC	2 cut(s)	46, 529
Kzo9I	GATC	2 cut(s)	224, 422
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	773, 932
Lsp1109I	GCAGC	2 cut(s)	256, 545
LweI	GCATC	4 cut(s)	14, 154, 311, 652
MaeI	CTAG	1 cut(s)	924
MaeIII	GTNAC	3 cut(s)	168, 727, 972
MalI	GATC	2 cut(s)	226, 424
MboI	GATC	2 cut(s)	224, 422
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	4 cut(s)	132, 346, 392, 906
MluCI	AATT	7 cut(s)	180, 551, 577, 588, 679, 706, 855
MlyI	GAGTC	4 cut(s)	245, 373, 425, 707
MmeI	TCCRAC	2 cut(s)	261, 565
MnlI	CCTC	8 cut(s)	187, 190, 305, 493, 496, 595, 798, 799
MseI	TTAA	5 cut(s)	54, 288, 683, 747, 1009
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	2 cut(s)	885, 931
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	931
NdeII	GATC	2 cut(s)	224, 422
NlaIII	CATG	4 cut(s)	86, 446, 458, 804
NlaIV	GGNNCC	4 cut(s)	44, 130, 527, 944
NmuCI	GTSAC	1 cut(s)	727
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	992
PciSI	GCTCTTC	1 cut(s)	397
PfeI	GAWTC	8 cut(s)	19, 79, 95, 122, 293, 353, 464, 571
PfoI	TCCNGGA	1 cut(s)	929
PkrI	GCNGC	2 cut(s)	246, 560
PleI	GAGTC	4 cut(s)	244, 373, 425, 706
PpsI	GAGTC	4 cut(s)	244, 373, 425, 706
Psp6I	CCWGG	1 cut(s)	883
PspFI	CCCAGC	1 cut(s)	939
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	4 cut(s)	44, 130, 527, 944
PspOMI	GGGCCC	1 cut(s)	128
PspPI	GGNCC	4 cut(s)	128, 129, 492, 943
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	2 cut(s)	44, 527
RsaNI	GTAC	2 cut(s)	43, 526
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	54, 288, 683, 747, 1009
SatI	GCNGC	2 cut(s)	245, 559
Sau3AI	GATC	2 cut(s)	224, 422
Sau96I	GGNCC	4 cut(s)	128, 129, 492, 943
SchI	GAGTC	4 cut(s)	245, 373, 425, 707
ScrFI	CCNGG	2 cut(s)	885, 931
SduI	GDGCHC	4 cut(s)	132, 346, 392, 906
SfaNI	GCATC	4 cut(s)	14, 154, 311, 652
SinI	GGWCC	1 cut(s)	943
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	7 cut(s)	180, 551, 577, 588, 679, 706, 855
SsiI	CCGC	1 cut(s)	556
SspMI	CTAG	1 cut(s)	924
StyD4I	CCNGG	2 cut(s)	883, 929
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	22
TasI	AATT	7 cut(s)	180, 551, 577, 588, 679, 706, 855
TfiI	GAWTC	8 cut(s)	19, 79, 95, 122, 293, 353, 464, 571
Tru1I	TTAA	5 cut(s)	54, 288, 683, 747, 1009
Tru9I	TTAA	5 cut(s)	54, 288, 683, 747, 1009
TscAI	CASTG	6 cut(s)	406, 417, 441, 789, 875, 906
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	244, 558
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	7 cut(s)	17, 71, 99, 173, 174, 843, 981
TspGWI	ACGGA	2 cut(s)	49, 506
TspRI	CASTG	6 cut(s)	406, 417, 441, 789, 875, 906
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	943
XagI	CCTNNNNNAGG	1 cut(s)	999
XapI	RAATTY	5 cut(s)	180, 551, 577, 588, 679
XspI	CTAG	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.