Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000694.1

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Forward (+)

47580 .. 50250

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000694.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtgcgcttagtttccagtactggaattcataatccagaggaggaagatgactatcaagtagaagaaggatataatgatgagtcagagcagccttctttgcccccttcttttcctaaacttgagttggagattaaggaatccattgcatcgcttggaggtgctgtgttcccgaagctaaactggagtgcaccaaaagtttctgcttggattagcacaactgggactcttagatgctcttccttcagtgagattgcactgttgctacgatcatctgactcactggtgcatgatttgtgtcatgcttatgattcctgcaatgacaagacctcctcacggcccaagagcttcttccttgctctccgtaaatggtacccatcccttcagccagagatggaattccgctgctttgtgaggaatcagaatttagttggaatttcccagcgcgaggccacaaccttctacccttctctgcttgaaagcaaagagcatctgggagagttgattgaagagttctttatggaaaatttaaggtcaagattcgagtcggaaaattatacctttgatgtatacgtgacgaaggacgagcgagttaaggttatggatttcaacccttggagtgcatttacactgcctctgatgtttacatgggagaaactggaacagagtgataatgaacaaggggatggtgtggacttcagaattgtggagagccagtgtggtgttaggccaggtttgaagacagcagtgccctacgattatgtggacactagctctgggagtggctgggaccagtttttcaggaacgcggatgaagagttactgcggaaaagtaggtctccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

281

Amino Acids

32.25

Weight (kDa)

4.72

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	2 cut(s)	447, 809
AciI	CCGC	3 cut(s)	403, 809, 826
AcsI	RAATTY	5 cut(s)	27, 398, 424, 435, 526
AcuI	CTGAAG	3 cut(s)	229, 368, 682
AfaI	GTAC	2 cut(s)	22, 374
AfiI	CCNNNNNNNGG	2 cut(s)	336, 448
AgsI	TTSAA	4 cut(s)	479, 509, 610, 739
AjnI	CCWGG	1 cut(s)	730
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	178, 348, 774
AluI	AGCT	3 cut(s)	178, 348, 774
Alw21I	GWGCWC	1 cut(s)	193
Alw44I	GTGCAC	1 cut(s)	189
AoxI	GGCC	3 cut(s)	338, 450, 728
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	91, 405
ApoI	RAATTY	5 cut(s)	27, 398, 424, 435, 526
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	9, 447
AspS9I	GGNCC	2 cut(s)	339, 790
AvaII	GGWCC	1 cut(s)	790
BaeGI	GKGCMC	2 cut(s)	193, 753
BanI	GGYRCC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	103, 392
BccI	CCATC	3 cut(s)	385, 388, 680
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	732
BfaI	CTAG	1 cut(s)	771
BisI	GCNGC	2 cut(s)	92, 406
BlsI	GCNGC	2 cut(s)	93, 407
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	732
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	339, 790
BmiI	GGNNCC	2 cut(s)	374, 791
BmrFI	CCNGG	1 cut(s)	732
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	158, 224, 499
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	746
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	574
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	614
BsaXI	ACNNNNNCTCC	6 cut(s)	150, 180, 314, 344, 701, 731
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 448
Bse1I	ACTGG	8 cut(s)	18, 28, 188, 226, 288, 663, 715, 793
Bse3DI	GCAATG	2 cut(s)	144, 325
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	3 cut(s)	377, 691, 817
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	336, 448
BseMI	GCAATG	2 cut(s)	144, 325
BseNI	ACTGG	8 cut(s)	18, 28, 188, 226, 288, 663, 715, 793
BseRI	GAGGAG	2 cut(s)	56, 322
BseSI	GKGCMC	2 cut(s)	193, 753
BseXI	GCAGC	2 cut(s)	103, 392
BseYI	CCCAGC	2 cut(s)	441, 786
Bsh1236I	CGCG	2 cut(s)	447, 809
BshFI	GGCC	3 cut(s)	340, 452, 730
BshNI	GGYRCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	238, 803
BslI	CCNNNNNNNGG	2 cut(s)	336, 448
BsmFI	GGGAC	2 cut(s)	238, 803
BsnI	GGCC	3 cut(s)	340, 452, 730
Bsp1286I	GDGCHC	2 cut(s)	193, 753
Bsp143I	GATC	1 cut(s)	269
BspACI	CCGC	3 cut(s)	403, 809, 826
BspANI	GGCC	3 cut(s)	340, 452, 730
BspFNI	CGCG	2 cut(s)	447, 809
BspLI	GGNNCC	2 cut(s)	374, 791
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	144, 325
BsrI	ACTGG	8 cut(s)	18, 28, 188, 226, 288, 663, 715, 793
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	1 cut(s)	269
BssNAI	GTATAC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	614
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	3 cut(s)	244, 504, 810
BstBAI	YACGTR	1 cut(s)	574
BstDEI	CTNAG	2 cut(s)	10, 230
BstF5I	GGATG	3 cut(s)	377, 691, 817
BstFNI	CGCG	2 cut(s)	447, 809
BstHHI	GCGC	2 cut(s)	9, 447
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	730
BstSLI	GKGCMC	2 cut(s)	193, 753
BstUI	CGCG	2 cut(s)	447, 809
BstV1I	GCAGC	2 cut(s)	103, 392
BstV2I	GAAGAC	1 cut(s)	746
BstZ17I	GTATAC	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	340, 452, 730
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	377, 691, 817
BtsI	GCAGTG	2 cut(s)	629, 753
BtsIMutI	CAGTG	6 cut(s)	253, 257, 281, 629, 722, 753
CfoI	GCGC	2 cut(s)	9, 447
Cfr13I	GGNCC	2 cut(s)	339, 790
Csp6I	GTAC	2 cut(s)	21, 373
CviAII	CATG	3 cut(s)	290, 302, 648
CviQI	GTAC	2 cut(s)	21, 373
DdeI	CTNAG	2 cut(s)	10, 230
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	244, 504, 810
EarI	CTCTTC	3 cut(s)	244, 504, 810
Eco130I	CCWWGG	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	790
Eco57I	CTGAAG	3 cut(s)	229, 368, 682
EcoRI	GAATTC	2 cut(s)	27, 398
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	614
FaeI	CATG	3 cut(s)	293, 305, 651
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	238, 803
FatI	CATG	3 cut(s)	289, 301, 647
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	92, 406
FokI	GGATG	3 cut(s)	364, 698, 824
Fsp4HI	GCNGC	2 cut(s)	92, 406
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	2 cut(s)	8, 446
GluI	GCNGC	2 cut(s)	92, 406
GsaI	CCCAGC	2 cut(s)	445, 790
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	340, 452, 730
HhaI	GCGC	2 cut(s)	9, 447
Hin1II	CATG	3 cut(s)	293, 305, 651
Hin6I	GCGC	2 cut(s)	7, 445
HinP1I	GCGC	2 cut(s)	7, 445
HinfI	GANTC	8 cut(s)	83, 140, 226, 278, 311, 418, 540, 545
Hpy166II	GTNNAC	5 cut(s)	191, 571, 645, 694, 766
Hpy188I	TCNGA	6 cut(s)	88, 277, 423, 550, 639, 701
Hpy188III	TCNNGA	4 cut(s)	38, 172, 537, 802
Hpy8I	GTNNAC	5 cut(s)	191, 571, 645, 694, 766
HpyAV	CCTTC	8 cut(s)	62, 105, 117, 253, 392, 469, 477, 574
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	6 cut(s)	149, 191, 257, 289, 318, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	10, 230
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	293, 305, 651
HspAI	GCGC	2 cut(s)	7, 445
KpnI	GGTACC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	269
LguI	GCTCTTC	1 cut(s)	244
Lsp1109I	GCAGC	2 cut(s)	103, 392
LweI	GCATC	3 cut(s)	158, 224, 499
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	574, 819
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	7 cut(s)	59, 77, 231, 343, 521, 751, 827
MhlI	GDGCHC	2 cut(s)	193, 753
MluCI	AATT	7 cut(s)	27, 398, 424, 435, 526, 553, 702
MlyI	GAGTC	4 cut(s)	92, 220, 272, 554
MmeI	TCCRAC	3 cut(s)	108, 412, 528
MnlI	CCTC	8 cut(s)	34, 37, 152, 340, 343, 408, 442, 645
MseI	TTAA	4 cut(s)	135, 530, 594, 844
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	2 cut(s)	447, 809
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	293, 305, 651
NlaIV	GGNNCC	2 cut(s)	374, 791
NmuCI	GTSAC	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	140, 311, 418, 540
PkrI	GCNGC	2 cut(s)	93, 407
PleI	GAGTC	4 cut(s)	91, 220, 272, 553
PpsI	GAGTC	4 cut(s)	91, 220, 272, 553
Ppu21I	YACGTR	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	2 cut(s)	441, 786
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	2 cut(s)	374, 791
PspPI	GGNCC	2 cut(s)	339, 790
RsaI	GTAC	2 cut(s)	22, 374
RsaNI	GTAC	2 cut(s)	21, 373
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	4 cut(s)	135, 530, 594, 844
SatI	GCNGC	2 cut(s)	92, 406
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	2 cut(s)	339, 790
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	4 cut(s)	92, 220, 272, 554
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	2 cut(s)	193, 753
SfaNI	GCATC	3 cut(s)	158, 224, 499
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	7 cut(s)	27, 398, 424, 435, 526, 553, 702
SsiI	CCGC	3 cut(s)	403, 809, 826
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	543
TasI	AATT	7 cut(s)	27, 398, 424, 435, 526, 553, 702
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	4 cut(s)	140, 311, 418, 540
Tru1I	TTAA	4 cut(s)	135, 530, 594, 844
Tru9I	TTAA	4 cut(s)	135, 530, 594, 844
TscAI	CASTG	6 cut(s)	253, 264, 288, 636, 722, 753
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	2 cut(s)	91, 405
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	3 cut(s)	20, 690, 828
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	6 cut(s)	253, 264, 288, 636, 722, 753
VneI	GTGCAC	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	5 cut(s)	27, 398, 424, 435, 526
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	1 cut(s)	771
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.