Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Forward (+)

6267385 .. 6268387

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1087500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAAGGAAGAAGAAGTGAATCGATGCCAGATACAGGAATGGTACCAAAAGTTTAAATCTTTGTCTATCAAAACCCGAATTCATGAACTTCCAGAATCCTTTGTCCAATACCTTCTCGACGATTCAGGGCCCTTCCTTCTCCCTGTTTCGATCTCAAATGACGATGCATTCCCCAATAGAATTCATAATCTGGAGGAGGAAGACGACTATCAAGTATCAGAAGGGTCTGGGGATGAGTCGGAGCAGCCTTCTATGCCGCCCTCCTTCCCTGAACTTGAGTTGGAGGTCAAGGAATCGATTAAGTCCCTTGGAGGTTCTGTGTTCCCTAAGCTAAACTGGAGTGCACCAAAAGACTCGGCTTGGATCAGCACAACTGGGAGCCTCAAGTGCTCTTCGTTCATGACAAAAACCTCAACAAGGCCTAAGAGTTTCTTCCTTGCACTACGGAAATGGTACCAGTCCCTCAAGCCAGAGATGGAGTTCCGTTGCTTTGTACGAAATCATAATTTAGTTGGAATTTCACAACGTGAGGTCACTACTTGTTATCCTGCTCTGCTTGAAAAGAAACACAGCCTTCAAGCGTTGATCGAAGACTTTTTCATGGATAATTTGATGTCCAGATTTGAATCAGAAAATTACACCTTTGATGTATATGTGACACAGGATGATCGAATTAAGGTTGTGGATTTCAACCCATGGGGCGCATTTACGCTACCTCTAATGTTTACATGGGAGGAATTGGATCAGATTCGAGGGGATGGTGTTGAATTCAGAATTGTAGAGAGTCAGTTATCTGTTAGGCCAGGTCTGAAGACAGCCGTGCCGTTTGATTTTTTGGACACAAGTGCTGGGAGTGGCTGGGACCAAGTTATCAGAAATGCTGATGAAGAGTTGCAGCAGCAAACTAGGAACGGTCAAGCAGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

310

Amino Acids

35.55

Weight (kDa)

4.74

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D123	PF07065	14 - 133	5.2e-31	D123
D123	PF07065	136 - 282	4.4e-44	D123

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	911
Acc65I	GGTACC	2 cut(s)	42, 453
AccB1I	GGYRCC	2 cut(s)	42, 453
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	2 cut(s)	371, 750
AcsI	RAATTY	4 cut(s)	78, 180, 516, 767
AcuI	CTGAAG	1 cut(s)	830
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	44, 455, 495
AfiI	CCNNNNNNNGG	2 cut(s)	34, 417
AgsI	TTSAA	5 cut(s)	560, 578, 626, 691, 767
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	2 cut(s)	346, 392
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	371, 750
AoxI	GGCC	3 cut(s)	128, 419, 800
ApaI	GGGCCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	244, 895, 898
ApoI	RAATTY	4 cut(s)	78, 180, 516, 767
Asp718I	GGTACC	2 cut(s)	42, 453
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	128, 129, 862
AvaII	GGWCC	1 cut(s)	862
BaeGI	GKGCMC	2 cut(s)	132, 346
BanI	GGYRCC	2 cut(s)	42, 453
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	3 cut(s)	207, 597, 818
Bbv12I	GWGCWC	2 cut(s)	346, 392
BbvI	GCAGC	3 cut(s)	256, 907, 910
BccI	CCATC	2 cut(s)	469, 752
BceAI	ACGGC	2 cut(s)	803, 808
BciT130I	CCWGG	1 cut(s)	804
BfaI	CTAG	1 cut(s)	906
BfuAI	ACCTGC	1 cut(s)	911
BisI	GCNGC	4 cut(s)	245, 257, 896, 899
BlsI	GCNGC	4 cut(s)	246, 258, 897, 900
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	1 cut(s)	862
BmgT120I	GGNCC	3 cut(s)	128, 129, 862
BmiI	GGNNCC	5 cut(s)	44, 130, 380, 455, 863
BmrFI	CCNGG	1 cut(s)	804
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	14, 154
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	3 cut(s)	207, 597, 818
BpmI	CTGGAG	2 cut(s)	212, 358
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	3 cut(s)	296, 368, 449
Bsa29I	ATCGAT	2 cut(s)	22, 296
BsaBI	GATNNNNATC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	307, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 417
Bse1I	ACTGG	3 cut(s)	341, 379, 457
Bse8I	GATNNNNATC	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	804
BseCI	ATCGAT	2 cut(s)	22, 296
BseDI	CCNNGG	2 cut(s)	307, 695
BseGI	GGATG	3 cut(s)	238, 670, 763
BseJI	GATNNNNATC	1 cut(s)	625
BseLI	CCNNNNNNNGG	2 cut(s)	34, 417
BseNI	ACTGG	3 cut(s)	341, 379, 457
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	2 cut(s)	132, 346
BseXI	GCAGC	3 cut(s)	256, 907, 910
BseYI	CCCAGC	2 cut(s)	848, 858
BshFI	GGCC	3 cut(s)	130, 421, 802
BshNI	GGYRCC	2 cut(s)	42, 453
BshVI	ATCGAT	2 cut(s)	22, 296
BsiHKAI	GWGCWC	2 cut(s)	346, 392
BslFI	GGGAC	3 cut(s)	289, 445, 875
BslI	CCNNNNNNNGG	2 cut(s)	34, 417
BsmFI	GGGAC	3 cut(s)	289, 445, 875
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	130, 421, 802
Bsp120I	GGGCCC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	132, 346, 392
Bsp143I	GATC	5 cut(s)	150, 363, 585, 667, 742
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	3 cut(s)	130, 421, 802
BspDI	ATCGAT	2 cut(s)	22, 296
BspHI	TCATGA	2 cut(s)	82, 399
BspLI	GGNNCC	5 cut(s)	44, 130, 380, 455, 863
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	2 cut(s)	371, 750
BspQI	GCTCTTC	1 cut(s)	397
BspT107I	GGYRCC	2 cut(s)	42, 453
BsrI	ACTGG	3 cut(s)	341, 379, 457
BssECI	CCNNGG	2 cut(s)	307, 695
BssMI	GATC	5 cut(s)	150, 363, 585, 667, 742
BssT1I	CCWWGG	2 cut(s)	307, 695
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	1 cut(s)	914
Bst6I	CTCTTC	2 cut(s)	397, 882
BstDEI	CTNAG	2 cut(s)	327, 423
BstDSI	CCRYGG	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstF5I	GGATG	3 cut(s)	238, 670, 763
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	153, 366, 588, 670, 745
BstMBI	GATC	5 cut(s)	150, 363, 585, 667, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 387
BstNI	CCWGG	1 cut(s)	804
BstSCI	CCNGG	1 cut(s)	802
BstSLI	GKGCMC	2 cut(s)	132, 346
BstV1I	GCAGC	3 cut(s)	256, 907, 910
BstV2I	GAAGAC	3 cut(s)	207, 597, 818
Bsu15I	ATCGAT	2 cut(s)	22, 296
BsuRI	GGCC	3 cut(s)	130, 421, 802
BsuTUI	ATCGAT	2 cut(s)	22, 296
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	238, 670, 763
BveI	ACCTGC	1 cut(s)	911
CciI	TCATGA	2 cut(s)	82, 399
CfoI	GCGC	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	128, 129, 862
ClaI	ATCGAT	2 cut(s)	22, 296
Csp6I	GTAC	3 cut(s)	43, 454, 494
CviAII	CATG	5 cut(s)	83, 400, 601, 696, 729
CviQI	GTAC	3 cut(s)	43, 454, 494
DdeI	CTNAG	2 cut(s)	327, 423
DpnI	GATC	5 cut(s)	152, 365, 587, 669, 744
DpnII	GATC	5 cut(s)	150, 363, 585, 667, 742
DraI	TTTAAA	1 cut(s)	55
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	397, 882
EarI	CTCTTC	2 cut(s)	397, 882
Eco130I	CCWWGG	2 cut(s)	307, 695
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	830
EcoNI	CCTNNNNNAGG	1 cut(s)	415
EcoO109I	RGGNCCY	2 cut(s)	128, 129
EcoRI	GAATTC	3 cut(s)	78, 180, 767
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	2 cut(s)	307, 695
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	2 cut(s)	307, 695
FaeI	CATG	5 cut(s)	86, 403, 604, 699, 732
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	3 cut(s)	289, 445, 875
FatI	CATG	5 cut(s)	82, 399, 600, 695, 728
Fnu4HI	GCNGC	4 cut(s)	245, 257, 896, 899
FokI	GGATG	3 cut(s)	245, 677, 770
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	245, 257, 896, 899
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	4 cut(s)	245, 257, 896, 899
GsaI	CCCAGC	2 cut(s)	852, 862
GsuI	CTGGAG	2 cut(s)	212, 358
HaeIII	GGCC	3 cut(s)	130, 421, 802
HhaI	GCGC	1 cut(s)	704
Hin1II	CATG	5 cut(s)	86, 403, 604, 699, 732
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	9 cut(s)	19, 95, 122, 236, 293, 353, 626, 748, 784
Hpy166II	GTNNAC	2 cut(s)	344, 726
Hpy188I	TCNGA	7 cut(s)	220, 241, 631, 747, 773, 810, 875
Hpy188III	TCNNGA	6 cut(s)	83, 92, 116, 191, 400, 618
Hpy8I	GTNNAC	2 cut(s)	344, 726
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	7 cut(s)	122, 142, 146, 215, 258, 274, 584
HpyCH4III	ACNGT	1 cut(s)	914
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	4 cut(s)	167, 344, 440, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 387
HpyF3I	CTNAG	2 cut(s)	327, 423
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	5 cut(s)	86, 403, 604, 699, 732
HspAI	GCGC	1 cut(s)	702
KpnI	GGTACC	2 cut(s)	46, 457
Kzo9I	GATC	5 cut(s)	150, 363, 585, 667, 742
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	241, 378
Lsp1109I	GCAGC	3 cut(s)	256, 907, 910
LweI	GCATC	2 cut(s)	14, 154
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	532, 655
MalI	GATC	5 cut(s)	152, 365, 587, 669, 744
MboI	GATC	5 cut(s)	150, 363, 585, 667, 742
MboII	GAAGA	8 cut(s)	20, 23, 212, 384, 424, 602, 823, 899
MhlI	GDGCHC	3 cut(s)	132, 346, 392
MlyI	GAGTC	3 cut(s)	245, 347, 793
MmeI	TCCRAC	3 cut(s)	219, 261, 493
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	4 cut(s)	54, 300, 675, 928
MspR9I	CCNGG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	2 cut(s)	253, 387
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	5 cut(s)	150, 363, 585, 667, 742
NlaIII	CATG	5 cut(s)	86, 403, 604, 699, 732
NlaIV	GGNNCC	5 cut(s)	44, 130, 380, 455, 863
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	2 cut(s)	532, 655
NsiI	ATGCAT	1 cut(s)	169
PagI	TCATGA	2 cut(s)	82, 399
PaqCI	CACCTGC	1 cut(s)	911
PceI	AGGCCT	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	397
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	6 cut(s)	19, 95, 122, 293, 626, 748
PkrI	GCNGC	4 cut(s)	246, 258, 897, 900
PleI	GAGTC	3 cut(s)	244, 347, 792
PpsI	GAGTC	3 cut(s)	244, 347, 792
Psp6I	CCWGG	1 cut(s)	802
PspFI	CCCAGC	2 cut(s)	848, 858
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	5 cut(s)	44, 130, 380, 455, 863
PspOMI	GGGCCC	1 cut(s)	128
PspPI	GGNCC	3 cut(s)	128, 129, 862
RsaI	GTAC	3 cut(s)	44, 455, 495
RsaNI	GTAC	3 cut(s)	43, 454, 494
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	4 cut(s)	54, 300, 675, 928
SatI	GCNGC	4 cut(s)	245, 257, 896, 899
Sau3AI	GATC	5 cut(s)	150, 363, 585, 667, 742
Sau96I	GGNCC	3 cut(s)	128, 129, 862
SchI	GAGTC	3 cut(s)	245, 347, 793
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	3 cut(s)	132, 346, 392
SfaNI	GCATC	2 cut(s)	14, 154
SinI	GGWCC	1 cut(s)	862
SmlI	CTYRAG	3 cut(s)	275, 383, 464
SmoI	CTYRAG	3 cut(s)	275, 383, 464
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	906
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	2 cut(s)	307, 695
TaaI	ACNGT	1 cut(s)	914
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	7 cut(s)	22, 117, 149, 296, 588, 670, 751
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	6 cut(s)	19, 95, 122, 293, 626, 748
Tru1I	TTAA	4 cut(s)	54, 300, 675, 928
Tru9I	TTAA	4 cut(s)	54, 300, 675, 928
TseFI	GTSAC	2 cut(s)	532, 655
TseI	GCWGC	3 cut(s)	244, 895, 898
Tsp45I	GTSAC	2 cut(s)	532, 655
TspDTI	ATGAA	7 cut(s)	17, 71, 99, 173, 388, 589, 900
TspGWI	ACGGA	2 cut(s)	460, 473
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	862
XagI	CCTNNNNNAGG	1 cut(s)	415
XapI	RAATTY	4 cut(s)	78, 180, 516, 767
XspI	CTAG	1 cut(s)	906
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.