Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Reverse (-)

23301448 .. 23302461

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAGGAAGACGAAGTGAATCGATGCCAGATACAGGAATGGTACCCAAAATTCAAATCTGTGTCTATCAAAACTCGGATTCATGAACTTCCAGAACCCTTTGTCCAGTACCTTCTAGATGATTCGGGGCCCTTCCTCCTCCCCGTTTCAATCACAAATGAAGATGCTTTTCCCAATAGAATTCATAATCCAGAGGAGGAAGATGACTATCAAATATCAGAAGGGTCTGATGACGAGGCAGAGCAGCCTCCGTTGCCACCTTCTTTCCCTGAGCTTGAGTTGCAGGTCAAGGAGTCAATTGAATCACTTGGAGGTTCTGTGTTCCCTAAGCTCAACTGGAGTGCACCAAAAGACTCTGCTTGGATCAGCACGACTGGGACACTCAAATGCTCTTCATTCAGTGAGATTGCCCTCTTGCTACGCTCATCTGACTCATTGGTTCATGATTTATGTCATGCCTACGATTCGTGCCACGATAAAACCTCATCGAGACCTAAGAGTTTCGTGCTTGCACTTCGTAAATGGTACCAGTTCCTTAAGCCAGAGATGGAATTCCGTTGCTTTGTACGAAATCAGAATTTGGTTGGAATTTCCCAACGTGAGGTCACTACTTTTTACCCTGCTCTACTTGAAAAGAAAGACAGTCTTCGAGTGTTGATTGAAGATTTTTTCGTGGAGAATTTGATGTCGAGATTTGAGTCGGAAAACTACACCTTTGATGTCTATGTGACAGAGGATGATCGGGTTAAGGTTGTGGATTTTAACCCATGGGGTGCATTTACGTTGCCTCTCATGTTTACATGGGAGGAATTGGATCAGAATTGCAGTGAACTAGGGGATGATGGTGTGGACTTCAGAATTGTGGAGGGTCAGTGTGCTGTTAGGCCAGGTCTGAAGACCGCAGTGCCGTATGATTATTTGGACACCAGCCCCGGGAGCGGCTGGGACCAGTTTATGCGAAATGCCGATGAAGAGTTGCAGCAGCAAACTAGGAATGCTCAAGCAGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

338

Amino Acids

38.72

Weight (kDa)

4.5

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	995
Acc36I	ACCTGC	2 cut(s)	274, 995
Acc65I	GGTACC	2 cut(s)	42, 525
AccB1I	GGYRCC	2 cut(s)	42, 525
AccBSI	CCGCTC	1 cut(s)	939
AciI	CCGC	2 cut(s)	900, 939
AclWI	GGATC	2 cut(s)	371, 822
AcsI	RAATTY	6 cut(s)	50, 180, 551, 577, 588, 679
AcuI	CTGAAG	2 cut(s)	838, 914
AfaI	GTAC	4 cut(s)	44, 110, 527, 567
AfiI	CCNNNNNNNGG	4 cut(s)	34, 601, 933, 938
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	5 cut(s)	55, 150, 302, 632, 662
AjnI	CCWGG	1 cut(s)	886
AloI	GAACNNNNNNTCC	2 cut(s)	87, 119
AluBI	AGCT	2 cut(s)	274, 331
AluI	AGCT	2 cut(s)	274, 331
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	484
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	371, 822
Ama87I	CYCGRG	1 cut(s)	932
AoxI	GGCC	2 cut(s)	128, 884
ApaI	GGGCCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	244, 979, 982
ApoI	RAATTY	6 cut(s)	50, 180, 551, 577, 588, 679
Asp718I	GGTACC	2 cut(s)	42, 525
AspS9I	GGNCC	3 cut(s)	128, 129, 946
AsuC2I	CCSGG	2 cut(s)	933, 934
AvaI	CYCGRG	1 cut(s)	932
AvaII	GGWCC	1 cut(s)	946
BaeGI	GKGCMC	2 cut(s)	132, 346
BanI	GGYRCC	2 cut(s)	42, 525
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	3 cut(s)	15, 638, 902
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	256, 991, 994
BccI	CCATC	2 cut(s)	541, 836
BceAI	ACGGC	1 cut(s)	892
BciT130I	CCWGG	1 cut(s)	888
BcnI	CCSGG	2 cut(s)	933, 934
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	3 cut(s)	116, 833, 990
BfrI	CTTAAG	1 cut(s)	536
BfuAI	ACCTGC	2 cut(s)	274, 995
BisI	GCNGC	4 cut(s)	245, 940, 980, 983
BlsI	GCNGC	4 cut(s)	246, 941, 981, 984
Bme1390I	CCNGG	3 cut(s)	888, 933, 934
Bme18I	GGWCC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	932
BmgT120I	GGNCC	3 cut(s)	128, 129, 946
BmiI	GGNNCC	5 cut(s)	44, 129, 130, 527, 947
BmrFI	CCNGG	3 cut(s)	888, 933, 934
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	14, 154
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	3 cut(s)	15, 638, 902
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	2 cut(s)	270, 327
BpuEI	CTTGAG	2 cut(s)	296, 984
BpuMI	CCSGG	2 cut(s)	933, 934
Bsa29I	ATCGAT	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	767, 931, 932
BsaXI	ACNNNNNCTCC	4 cut(s)	303, 333, 857, 887
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 601, 933, 938
Bse1I	ACTGG	5 cut(s)	106, 341, 379, 529, 949
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	767, 931, 932
BseGI	GGATG	2 cut(s)	742, 844
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	4 cut(s)	34, 601, 933, 938
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	5 cut(s)	106, 341, 379, 529, 949
BseRI	GAGGAG	2 cut(s)	128, 209
BseSI	GKGCMC	2 cut(s)	132, 346
BseXI	GCAGC	3 cut(s)	256, 991, 994
BseYI	CCCAGC	1 cut(s)	942
BshFI	GGCC	2 cut(s)	130, 886
BshNI	GGYRCC	2 cut(s)	42, 525
BshVI	ATCGAT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	1 cut(s)	933
BslFI	GGGAC	2 cut(s)	391, 959
BslI	CCNNNNNNNGG	4 cut(s)	34, 601, 933, 938
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	391, 959
BsmI	GAATGC	1 cut(s)	1000
BsnI	GGCC	2 cut(s)	130, 886
Bso31I	GGTCTC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	932
Bsp120I	GGGCCC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	132, 346
Bsp143I	GATC	3 cut(s)	363, 739, 814
Bsp19I	CCATGG	1 cut(s)	767
BspACI	CCGC	2 cut(s)	900, 939
BspANI	GGCC	2 cut(s)	130, 886
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	22
BspHI	TCATGA	2 cut(s)	82, 442
BspLI	GGNNCC	5 cut(s)	44, 129, 130, 527, 947
BspMI	ACCTGC	2 cut(s)	274, 995
BspPI	GGATC	2 cut(s)	371, 822
BspQI	GCTCTTC	1 cut(s)	397
BspT107I	GGYRCC	2 cut(s)	42, 525
BspTI	CTTAAG	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	939
BsrI	ACTGG	5 cut(s)	106, 341, 379, 529, 949
BssECI	CCNNGG	3 cut(s)	767, 931, 932
BssMI	GATC	3 cut(s)	363, 739, 814
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	2 cut(s)	397, 966
BstAFI	CTTAAG	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	3 cut(s)	270, 327, 495
BstDSI	CCRYGG	1 cut(s)	767
BstF5I	GGATG	2 cut(s)	742, 844
BstKTI	GATC	3 cut(s)	366, 742, 817
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	3 cut(s)	363, 739, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 280, 936
BstNI	CCWGG	1 cut(s)	888
BstSCI	CCNGG	3 cut(s)	886, 931, 932
BstSLI	GKGCMC	2 cut(s)	132, 346
BstV1I	GCAGC	3 cut(s)	256, 991, 994
BstV2I	GAAGAC	3 cut(s)	15, 638, 902
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	130, 886
BsuTUI	ATCGAT	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	767
BtsCI	GGATG	2 cut(s)	742, 844
BtsI	GCAGTG	2 cut(s)	832, 909
BtsIMutI	CAGTG	4 cut(s)	406, 832, 878, 909
BveI	ACCTGC	2 cut(s)	274, 995
Cac8I	GCNNGC	1 cut(s)	510
CciI	TCATGA	2 cut(s)	82, 442
Cfr13I	GGNCC	3 cut(s)	128, 129, 946
Cfr9I	CCCGGG	1 cut(s)	932
ClaI	ATCGAT	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	43, 109, 526, 566
CviAII	CATG	6 cut(s)	83, 443, 455, 768, 793, 801
CviJI	RGCY	8 cut(s)	130, 247, 274, 331, 541, 886, 930, 942
CviKI_1	RGCY	8 cut(s)	130, 247, 274, 331, 541, 886, 930, 942
CviQI	GTAC	4 cut(s)	43, 109, 526, 566
DdeI	CTNAG	3 cut(s)	270, 327, 495
DpnI	GATC	3 cut(s)	365, 741, 816
DpnII	GATC	3 cut(s)	363, 739, 814
Eam1104I	CTCTTC	2 cut(s)	397, 966
EarI	CTCTTC	2 cut(s)	397, 966
Eco130I	CCWWGG	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	946
Eco57I	CTGAAG	2 cut(s)	838, 914
Eco88I	CYCGRG	1 cut(s)	932
EcoO109I	RGGNCCY	2 cut(s)	128, 129
EcoRI	GAATTC	2 cut(s)	180, 551
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	767
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	767
FaeI	CATG	6 cut(s)	86, 446, 458, 771, 796, 804
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	2 cut(s)	391, 959
FatI	CATG	6 cut(s)	82, 442, 454, 767, 792, 800
Fnu4HI	GCNGC	4 cut(s)	245, 940, 980, 983
FokI	GGATG	2 cut(s)	749, 851
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	245, 940, 980, 983
FspBI	CTAG	3 cut(s)	116, 833, 990
GluI	GCNGC	4 cut(s)	245, 940, 980, 983
GsaI	CCCAGC	1 cut(s)	946
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	130, 886
HapII	CCGG	1 cut(s)	933
Hin1II	CATG	6 cut(s)	86, 446, 458, 771, 796, 804
HinfI	GANTC	9 cut(s)	19, 79, 122, 293, 302, 353, 431, 464, 698
HpaII	CCGG	1 cut(s)	933
Hpy166II	GTNNAC	4 cut(s)	344, 798, 830, 850
Hpy188I	TCNGA	9 cut(s)	78, 220, 229, 430, 576, 703, 819, 857, 894
Hpy188III	TCNNGA	7 cut(s)	83, 92, 116, 191, 443, 489, 690
Hpy8I	GTNNAC	4 cut(s)	344, 798, 830, 850
HpyAV	CCTTC	4 cut(s)	122, 142, 215, 270
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	2 cut(s)	598, 782
HpyCH4V	TGCA	6 cut(s)	283, 344, 512, 776, 825, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 280, 936
HpyF3I	CTNAG	3 cut(s)	270, 327, 495
HpySE526I	ACGT	2 cut(s)	598, 782
Hsp92II	CATG	6 cut(s)	86, 446, 458, 771, 796, 804
KpnI	GGTACC	2 cut(s)	46, 529
Kzo9I	GATC	3 cut(s)	363, 739, 814
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	936
Lsp1109I	GCAGC	3 cut(s)	256, 991, 994
LweI	GCATC	2 cut(s)	14, 154
MaeI	CTAG	3 cut(s)	116, 833, 990
MaeII	ACGT	2 cut(s)	598, 782
MaeIII	GTNAC	2 cut(s)	604, 727
MalI	GATC	3 cut(s)	365, 741, 816
MbiI	CCGCTC	1 cut(s)	939
MboI	GATC	3 cut(s)	363, 739, 814
MboII	GAAGA	8 cut(s)	20, 173, 212, 384, 638, 674, 907, 983
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	132, 346
MlyI	GAGTC	4 cut(s)	302, 347, 425, 707
MmeI	TCCRAC	2 cut(s)	565, 681
MseI	TTAA	4 cut(s)	537, 747, 762, 1012
MslI	CAYNNNNRTG	1 cut(s)	385
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	1 cut(s)	933
MspR9I	CCNGG	3 cut(s)	888, 933, 934
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	1000
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	3 cut(s)	253, 280, 936
NciI	CCSGG	2 cut(s)	933, 934
NcoI	CCATGG	1 cut(s)	767
NdeII	GATC	3 cut(s)	363, 739, 814
NlaIII	CATG	6 cut(s)	86, 446, 458, 771, 796, 804
NlaIV	GGNNCC	5 cut(s)	44, 129, 130, 527, 947
NmuCI	GTSAC	2 cut(s)	604, 727
PagI	TCATGA	2 cut(s)	82, 442
PaqCI	CACCTGC	1 cut(s)	995
PciSI	GCTCTTC	1 cut(s)	397
PctI	GAATGC	1 cut(s)	1000
PfeI	GAWTC	5 cut(s)	19, 79, 122, 302, 464
PkrI	GCNGC	4 cut(s)	246, 941, 981, 984
PleI	GAGTC	4 cut(s)	301, 347, 425, 706
PpsI	GAGTC	4 cut(s)	301, 347, 425, 706
Psp6I	CCWGG	1 cut(s)	886
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	5 cut(s)	44, 129, 130, 527, 947
PspOMI	GGGCCC	1 cut(s)	128
PspPI	GGNCC	3 cut(s)	128, 129, 946
RsaI	GTAC	4 cut(s)	44, 110, 527, 567
RsaNI	GTAC	4 cut(s)	43, 109, 526, 566
RseI	CAYNNNNRTG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	4 cut(s)	537, 747, 762, 1012
SatI	GCNGC	4 cut(s)	245, 940, 980, 983
Sau3AI	GATC	3 cut(s)	363, 739, 814
Sau96I	GGNCC	3 cut(s)	128, 129, 946
SchI	GAGTC	4 cut(s)	302, 347, 425, 707
ScrFI	CCNGG	3 cut(s)	888, 933, 934
SduI	GDGCHC	2 cut(s)	132, 346
SfaNI	GCATC	2 cut(s)	14, 154
SinI	GGWCC	1 cut(s)	946
SmaI	CCCGGG	1 cut(s)	934
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	3 cut(s)	275, 536, 999
SmoI	CTYRAG	3 cut(s)	275, 536, 999
SsiI	CCGC	2 cut(s)	900, 939
SspMI	CTAG	3 cut(s)	116, 833, 990
StyD4I	CCNGG	3 cut(s)	886, 931, 932
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	2 cut(s)	601, 785
TaqI	TCGA	4 cut(s)	22, 488, 649, 689
TauI	GCSGC	1 cut(s)	942
TfiI	GAWTC	5 cut(s)	19, 79, 122, 302, 464
Tru1I	TTAA	4 cut(s)	537, 747, 762, 1012
Tru9I	TTAA	4 cut(s)	537, 747, 762, 1012
TscAI	CASTG	4 cut(s)	406, 832, 878, 909
TseFI	GTSAC	2 cut(s)	604, 727
TseI	GCWGC	3 cut(s)	244, 979, 982
Tsp45I	GTSAC	2 cut(s)	604, 727
TspDTI	ATGAA	8 cut(s)	17, 71, 99, 173, 174, 384, 431, 984
TspGWI	ACGGA	2 cut(s)	240, 545
TspMI	CCCGGG	1 cut(s)	932
TspRI	CASTG	4 cut(s)	406, 832, 878, 909
Vha464I	CTTAAG	1 cut(s)	536
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	946
XapI	RAATTY	6 cut(s)	50, 180, 551, 577, 588, 679
XbaI	TCTAGA	1 cut(s)	115
XmaI	CCCGGG	1 cut(s)	932
XspI	CTAG	3 cut(s)	116, 833, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.