Rw1G004150

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003334
Physical Location & Seq
Reverse (-)
7786522 .. 7787974
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004150.1

Sequence Viewer

Length: 732 bp
ATGATGGAAGAAGAAGTGAATCGATGCCAGATACAGGAATGGTACCCTAAGTTTAAATCTGTGTCTATCAAAACACGGATTCATGAACTTCCAGAATCCTTCGTCCAATATCTTCTTGATGATTCAGGGCCCTTCCTTCTTCCAGTTTCCATCTCAAATGAAGATGCCTTACCTAATAGAATTCATAATCCAGAGGAGGAAGATGACTATCAAGTAGAAGAAGGATCTGATGATGAGTCAGAGCAGCCTTCGTTATTACCGCCTTCTTTTCCTGAACTTGAGTTGGAGATTAAGGAATCCATTGCATCAGTTGGAGGTGCTGTGTTCCCGAAGCTAAACTGGAGTGCACCAAAAGATTCTGCTTGGATTAGCACAACAGGGACTCTCAGATGCTCTTCCTTAAGTGAGATTGCATTGTTGCTACGATCATCTGACTCACTGGTGCATGATTTGTGTCATGCGTATGATTCCTGCAATGACAAGACCTCCTCACGGCCCAAGAGCTTCTTCCTTGCTCTCCGTAAATGGTACCCATCCCTTCAGCCAGACATGGAATTTCGCTGCTTTGTAAGGAATCAAAATTTAGTTGGAATTTCCCAACGTGAGGCCACAACCTTGTACCCTTCTCTGCTTGAAAGCAAAGAACGTCTTGGAGTGTTGATTGAAGACTTCTTTATGGAAAATTTAAGTACATTATTGGAAGCTTTAGTCAAACTAATTGTCGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

243

Amino Acids

27.62

Weight (kDa)

4.59

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 14 - 231 1.1e-69 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 42, 528
AccB1I GGYRCC 2 cut(s) 42, 528
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 5 cut(s) 180, 554, 580, 591, 682
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 4 cut(s) 44, 530, 620, 691
AfiI CCNNNNNNNGG 3 cut(s) 34, 492, 604
AflII CTTAAG 1 cut(s) 400
AgsI TTSAA 2 cut(s) 635, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 3 cut(s) 334, 504, 704
AluI AGCT 3 cut(s) 334, 504, 704
Alw21I GWGCWC 1 cut(s) 349
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 1 cut(s) 232
AoxI GGCC 3 cut(s) 128, 494, 606
ApaI GGGCCC 1 cut(s) 132
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 244, 561
ApoI RAATTY 5 cut(s) 180, 554, 580, 591, 682
ArsI GACNNNNNNTTYG 1 cut(s) 705
Asp718I GGTACC 2 cut(s) 42, 528
AspS9I GGNCC 3 cut(s) 128, 129, 495
BaeGI GKGCMC 2 cut(s) 132, 349
BanI GGYRCC 2 cut(s) 42, 528
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 256, 548
BccI CCATC 2 cut(s) 158, 541
BceAI ACGGC 1 cut(s) 509
BfrI CTTAAG 1 cut(s) 400
BisI GCNGC 2 cut(s) 245, 562
BlsI GCNGC 2 cut(s) 246, 563
BmgT120I GGNCC 3 cut(s) 128, 129, 495
BmiI GGNNCC 3 cut(s) 44, 130, 530
BmsI GCATC 4 cut(s) 14, 154, 314, 380
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 299
Bsa29I ATCGAT 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 306, 336, 470, 500
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 492, 604
Bse1I ACTGG 3 cut(s) 143, 344, 444
Bse3DI GCAATG 2 cut(s) 300, 481
Bse8I GATNNNNATC 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 22
BseGI GGATG 1 cut(s) 533
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 34, 492, 604
BseMI GCAATG 2 cut(s) 300, 481
BseMII CTCAG 1 cut(s) 400
BseNI ACTGG 3 cut(s) 143, 344, 444
BseRI GAGGAG 2 cut(s) 209, 478
BseSI GKGCMC 2 cut(s) 132, 349
BseXI GCAGC 2 cut(s) 256, 548
BshFI GGCC 3 cut(s) 130, 496, 608
BshNI GGYRCC 2 cut(s) 42, 528
BshVI ATCGAT 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 349
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 3 cut(s) 34, 492, 604
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 3 cut(s) 130, 496, 608
Bsp120I GGGCCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 132, 349
Bsp143I GATC 2 cut(s) 224, 425
BspACI CCGC 1 cut(s) 260
BspANI GGCC 3 cut(s) 130, 496, 608
BspCNI CTCAG 1 cut(s) 399
BspDI ATCGAT 1 cut(s) 22
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 3 cut(s) 44, 130, 530
BspPI GGATC 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 400
BspT107I GGYRCC 2 cut(s) 42, 528
BspTI CTTAAG 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 300, 481
BsrI ACTGG 3 cut(s) 143, 344, 444
BssMI GATC 2 cut(s) 224, 425
Bst6I CTCTTC 1 cut(s) 400
BstAFI CTTAAG 1 cut(s) 400
BstDEI CTNAG 2 cut(s) 48, 386
BstF5I GGATG 1 cut(s) 533
BstKTI GATC 2 cut(s) 227, 428
BstMBI GATC 2 cut(s) 224, 425
BstSLI GKGCMC 2 cut(s) 132, 349
BstV1I GCAGC 2 cut(s) 256, 548
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 3 cut(s) 130, 496, 608
BsuTUI ATCGAT 1 cut(s) 22
BtsCI GGATG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 128, 129, 495
ClaI ATCGAT 1 cut(s) 22
Csp6I GTAC 4 cut(s) 43, 529, 619, 690
CviAII CATG 4 cut(s) 83, 446, 458, 550
CviJI RGCY 8 cut(s) 130, 247, 334, 496, 504, 544, 608, 704
CviKI_1 RGCY 8 cut(s) 130, 247, 334, 496, 504, 544, 608, 704
CviQI GTAC 4 cut(s) 43, 529, 619, 690
DdeI CTNAG 2 cut(s) 48, 386
DpnI GATC 2 cut(s) 226, 427
DpnII GATC 2 cut(s) 224, 425
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 524
EcoO109I RGGNCCY 2 cut(s) 128, 129
EcoRI GAATTC 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 4 cut(s) 86, 449, 461, 553
FaiI YATR 8 cut(s) 84, 186, 447, 459, 465, 551, 677, 730
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 633, 665
FaqI GGGAC 1 cut(s) 394
FatI CATG 4 cut(s) 82, 445, 457, 549
Fnu4HI GCNGC 2 cut(s) 245, 562
FokI GGATG 1 cut(s) 520
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 245, 562
GluI GCNGC 2 cut(s) 245, 562
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 3 cut(s) 130, 496, 608
Hin1II CATG 4 cut(s) 86, 449, 461, 553
HindIII AAGCTT 1 cut(s) 702
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 4 cut(s) 229, 241, 389, 433
Hpy188III TCNNGA 6 cut(s) 83, 92, 116, 191, 272, 328
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 8 cut(s) 109, 142, 146, 215, 258, 273, 548, 633
HpyCH4IV ACGT 2 cut(s) 601, 646
HpyCH4V TGCA 5 cut(s) 305, 347, 413, 445, 474
HpyF3I CTNAG 2 cut(s) 48, 386
HpySE526I ACGT 2 cut(s) 601, 646
Hsp92II CATG 4 cut(s) 86, 449, 461, 553
KpnI GGTACC 2 cut(s) 46, 532
Kzo9I GATC 2 cut(s) 224, 425
LguI GCTCTTC 1 cut(s) 400
Lsp1109I GCAGC 2 cut(s) 256, 548
LweI GCATC 4 cut(s) 14, 154, 314, 380
MaeII ACGT 2 cut(s) 601, 646
MalI GATC 2 cut(s) 226, 427
MboI GATC 2 cut(s) 224, 425
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 132, 349
MluCI AATT 6 cut(s) 180, 554, 580, 591, 682, 717
MlyI GAGTC 3 cut(s) 245, 376, 428
MmeI TCCRAC 3 cut(s) 264, 292, 568
MnlI CCTC 6 cut(s) 187, 190, 308, 496, 499, 598
MseI TTAA 4 cut(s) 54, 291, 401, 686
MslI CAYNNNNRTG 1 cut(s) 462
MspCI CTTAAG 1 cut(s) 400
NdeII GATC 2 cut(s) 224, 425
NlaIII CATG 4 cut(s) 86, 449, 461, 553
NlaIV GGNNCC 3 cut(s) 44, 130, 530
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 400
PfeI GAWTC 8 cut(s) 19, 79, 95, 122, 296, 356, 467, 574
PkrI GCNGC 2 cut(s) 246, 563
PleI GAGTC 3 cut(s) 244, 376, 428
PpsI GAGTC 3 cut(s) 244, 376, 428
PspN4I GGNNCC 3 cut(s) 44, 130, 530
PspOMI GGGCCC 1 cut(s) 128
PspPI GGNCC 3 cut(s) 128, 129, 495
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 4 cut(s) 44, 530, 620, 691
RsaNI GTAC 4 cut(s) 43, 529, 619, 690
RseI CAYNNNNRTG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 4 cut(s) 54, 291, 401, 686
SatI GCNGC 2 cut(s) 245, 562
Sau3AI GATC 2 cut(s) 224, 425
Sau96I GGNCC 3 cut(s) 128, 129, 495
SchI GAGTC 3 cut(s) 245, 376, 428
SduI GDGCHC 2 cut(s) 132, 349
SetI ASST 9 cut(s) 175, 319, 336, 488, 506, 604, 617, 649, 706
SfaNI GCATC 4 cut(s) 14, 154, 314, 380
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 278, 400
SmoI CTYRAG 2 cut(s) 278, 400
Sse9I AATT 6 cut(s) 180, 554, 580, 591, 682, 717
SsiI CCGC 1 cut(s) 260
TaiI ACGT 2 cut(s) 604, 649
TaqI TCGA 1 cut(s) 22
TasI AATT 6 cut(s) 180, 554, 580, 591, 682, 717
TatI WGTACW 1 cut(s) 689
TfiI GAWTC 8 cut(s) 19, 79, 95, 122, 296, 356, 467, 574
Tru1I TTAA 4 cut(s) 54, 291, 401, 686
Tru9I TTAA 4 cut(s) 54, 291, 401, 686
TscAI CASTG 1 cut(s) 444
TseI GCWGC 2 cut(s) 244, 561
TspDTI ATGAA 4 cut(s) 71, 99, 173, 174
TspGWI ACGGA 2 cut(s) 91, 509
TspRI CASTG 1 cut(s) 444
Vha464I CTTAAG 1 cut(s) 400
VneI GTGCAC 1 cut(s) 345
XapI RAATTY 5 cut(s) 180, 554, 580, 591, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.