Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Forward (+)

7948691 .. 7950777

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G099600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATGCATTATACGCTGAGCAACAAAATGAAGGAAGAAGAAGTGAATCGATGCCAGATACAGGAATGGTATCCTAAATTCAAATCTCTGTCCATCAAAACTCGGATTCATGAACTTCCAGAATCCTTTGTCCAATACCTGCTAGATGATTCGGGGCCCTTCCTCCTCCCTGTTTCAATCTCAAATGAAGATGCTTTTCCCAATAGAATTCATAATCCTGAGGAGGCAGATGACTATCAAGTATCAGAAGGGTCTGATGATGACGAGTCAGAGCAGCCTCCATTGCCACCTTCTTTCCCTGAGCTTGAGTTGCAGGTCAAGGAATCAATTGAATCACTTGGAGGGTCTGTGTTCCCTAAGCTCAACTGGAGTGCACCAAAAGACTCTGCTTGGATCAGCACAACTGGGACACTCAAATGCTCTTCGTTCAGTGAGATTGCCCTCTTGCTACGCTCATCTGATTCATTGATCCATGACTTGTGTCATGCCTATCATTCGTGCTGTGACAAAACCTCATCAAGACCTAAGAGTTTCTTCCTTGCACTTCGTAAATGGTACCAGTCCCTTAAGCCAGAGATGGAGTTGCGTTGCTTCGTACGAAATCAGAATTTGGTTGGAATTTCCCAACGTGAGGTCACTACTTTTTACCCTGCTCTGCTTGAAAAGAAAGACAGTCTTCCTGTGTTGATCGAAGATTTTTTCGTGGAAAATTTGATGTCGAGATTTGAATTGGAAAACTACACCTTTGATGTCTATGTGACAGAGGATAATCGGATTAAGGTTTTGGATTTTAACCCGTGGGGTGCATTTACCCTGCCTCTCATGTTTTCATGGGAGGAATTGGATCAGAATTGCAGTGAACCAGGAGATAATGGTGTGGACTTAAGAATTGTGGAGGGTCATTGTGCTGTTAGGCCAGGTCTGAAGACTGCAGTGCCATATGATTATTTGGACACTAGTCCCGGGAGTGGCTGGGACCAGTTTATGAGAAATGCCGATGAAGAGCTACAGCAGCAAACTAGAAATGCTCAAGCAGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

348

Amino Acids

39.78

Weight (kDa)

4.65

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1025
Acc36I	ACCTGC	3 cut(s)	147, 304, 1025
Acc65I	GGTACC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	555
AclWI	GGATC	3 cut(s)	401, 463, 852
AcsI	RAATTY	5 cut(s)	77, 207, 607, 618, 709
AcuI	CTGAAG	1 cut(s)	944
AfaI	GTAC	2 cut(s)	557, 597
AfiI	CCNNNNNNNGG	3 cut(s)	61, 631, 968
AflII	CTTAAG	2 cut(s)	566, 883
AgsI	TTSAA	5 cut(s)	82, 177, 332, 662, 728
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	2 cut(s)	862, 916
AluBI	AGCT	3 cut(s)	304, 361, 1006
AluI	AGCT	3 cut(s)	304, 361, 1006
Alw21I	GWGCWC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	3 cut(s)	401, 463, 852
Ama87I	CYCGRG	1 cut(s)	962
AoxI	GGCC	2 cut(s)	155, 914
ApaI	GGGCCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	274, 1012
ApoI	RAATTY	5 cut(s)	77, 207, 607, 618, 709
Asp718I	GGTACC	1 cut(s)	555
AspS9I	GGNCC	3 cut(s)	155, 156, 976
AsuC2I	CCSGG	2 cut(s)	963, 964
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	1 cut(s)	976
AxyI	CCTNAGG	1 cut(s)	219
BaeGI	GKGCMC	2 cut(s)	159, 376
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	668, 932
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	286, 1024
BccI	CCATC	2 cut(s)	101, 571
BciT130I	CCWGG	2 cut(s)	864, 918
BciVI	GTATCC	1 cut(s)	81
BcnI	CCSGG	2 cut(s)	963, 964
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	3 cut(s)	143, 957, 1020
BfmI	CTRYAG	2 cut(s)	930, 1007
BfrI	CTTAAG	2 cut(s)	566, 883
BfuAI	ACCTGC	3 cut(s)	147, 304, 1025
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	275, 1013
BlpI	GCTNAGC	1 cut(s)	17
BlsI	GCNGC	2 cut(s)	276, 1014
Bme1390I	CCNGG	4 cut(s)	864, 918, 963, 964
Bme18I	GGWCC	1 cut(s)	976
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	3 cut(s)	155, 156, 976
BmiI	GGNNCC	4 cut(s)	156, 157, 557, 977
BmrFI	CCNGG	4 cut(s)	864, 918, 963, 964
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	41, 181
BmuI	ACTGGG	1 cut(s)	414
BoxI	GACNNNNGTC	2 cut(s)	480, 957
BpiI	GAAGAC	2 cut(s)	668, 932
BpmI	CTGGAG	1 cut(s)	388
Bpu10I	CCTNAGC	2 cut(s)	300, 357
Bpu1102I	GCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	326, 1014
BpuMI	CCSGG	2 cut(s)	963, 964
Bsa29I	ATCGAT	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	797, 962
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 631, 968
Bse1I	ACTGG	4 cut(s)	371, 409, 559, 979
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	281
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	864, 918
BseCI	ATCGAT	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	797, 962
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	61, 631, 968
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	8, 210, 291
BseNI	ACTGG	4 cut(s)	371, 409, 559, 979
BseRI	GAGGAG	2 cut(s)	155, 236
BseSI	GKGCMC	2 cut(s)	159, 376
BseXI	GCAGC	2 cut(s)	286, 1024
BseYI	CCCAGC	1 cut(s)	972
BshFI	GGCC	2 cut(s)	157, 916
BshNI	GGYRCC	1 cut(s)	555
BshVI	ATCGAT	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	962
BsiSI	CCGG	1 cut(s)	963
BsiWI	CGTACG	1 cut(s)	595
BslFI	GGGAC	4 cut(s)	421, 547, 945, 989
BslI	CCNNNNNNNGG	3 cut(s)	61, 631, 968
BsmFI	GGGAC	4 cut(s)	421, 547, 945, 989
BsnI	GGCC	2 cut(s)	157, 916
BsoBI	CYCGRG	1 cut(s)	962
Bsp120I	GGGCCC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	159, 376
Bsp143I	GATC	4 cut(s)	393, 468, 687, 844
Bsp1720I	GCTNAGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	157, 916
BspCNI	CTCAG	3 cut(s)	9, 211, 292
BspDI	ATCGAT	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	156, 157, 557, 977
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	3 cut(s)	147, 304, 1025
BspPI	GGATC	3 cut(s)	401, 463, 852
BspQI	GCTCTTC	2 cut(s)	427, 996
BspT107I	GGYRCC	1 cut(s)	555
BspTI	CTTAAG	2 cut(s)	566, 883
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	371, 409, 559, 979
BssECI	CCNNGG	2 cut(s)	797, 962
BssMI	GATC	4 cut(s)	393, 468, 687, 844
Bst2UI	CCWGG	2 cut(s)	864, 918
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	2 cut(s)	427, 996
BstAFI	CTTAAG	2 cut(s)	566, 883
BstDEI	CTNAG	5 cut(s)	17, 219, 300, 357, 525
BstDSI	CCRYGG	1 cut(s)	797
BstKTI	GATC	4 cut(s)	396, 471, 690, 847
BstMBI	GATC	4 cut(s)	393, 468, 687, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 283, 310, 1012
BstNI	CCWGG	2 cut(s)	864, 918
BstPAI	GACNNNNGTC	2 cut(s)	480, 957
BstSCI	CCNGG	4 cut(s)	862, 916, 961, 962
BstSFI	CTRYAG	2 cut(s)	930, 1007
BstSLI	GKGCMC	2 cut(s)	159, 376
BstV1I	GCAGC	2 cut(s)	286, 1024
BstV2I	GAAGAC	2 cut(s)	668, 932
Bsu15I	ATCGAT	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	157, 916
BsuTUI	ATCGAT	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	797
BtsI	GCAGTG	2 cut(s)	862, 939
BtsIMutI	CAGTG	3 cut(s)	436, 862, 939
BveI	ACCTGC	3 cut(s)	147, 304, 1025
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	155, 156, 976
Cfr9I	CCCGGG	1 cut(s)	962
ClaI	ATCGAT	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	556, 596
CviAII	CATG	5 cut(s)	110, 473, 485, 823, 831
CviJI	RGCY	8 cut(s)	157, 277, 304, 361, 571, 916, 972, 1006
CviKI_1	RGCY	8 cut(s)	157, 277, 304, 361, 571, 916, 972, 1006
CviQI	GTAC	2 cut(s)	556, 596
DdeI	CTNAG	5 cut(s)	17, 219, 300, 357, 525
DpnI	GATC	4 cut(s)	395, 470, 689, 846
DpnII	GATC	4 cut(s)	393, 468, 687, 844
Eam1104I	CTCTTC	2 cut(s)	427, 996
EarI	CTCTTC	2 cut(s)	427, 996
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	976
Eco57I	CTGAAG	1 cut(s)	944
Eco81I	CCTNAGG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	962
EcoO109I	RGGNCCY	2 cut(s)	155, 156
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	862, 916
EcoT22I	ATGCAT	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	5 cut(s)	113, 476, 488, 826, 834
FalI	AAGNNNNNCTT	4 cut(s)	518, 550, 660, 692
FaqI	GGGAC	4 cut(s)	421, 547, 945, 989
FatI	CATG	5 cut(s)	109, 472, 484, 822, 830
FauNDI	CATATG	1 cut(s)	940
Fnu4HI	GCNGC	2 cut(s)	275, 1013
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	275, 1013
FspBI	CTAG	3 cut(s)	143, 957, 1020
GluI	GCNGC	2 cut(s)	275, 1013
GsaI	CCCAGC	1 cut(s)	976
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	157, 916
HapII	CCGG	1 cut(s)	963
Hin1II	CATG	5 cut(s)	113, 476, 488, 826, 834
HinfI	GANTC	9 cut(s)	46, 106, 122, 149, 266, 323, 332, 383, 461
HpaII	CCGG	1 cut(s)	963
Hpy166II	GTNNAC	3 cut(s)	374, 860, 880
Hpy188I	TCNGA	9 cut(s)	105, 247, 256, 271, 460, 606, 774, 849, 924
Hpy188III	TCNNGA	5 cut(s)	110, 119, 218, 519, 720
Hpy8I	GTNNAC	3 cut(s)	374, 860, 880
HpyAV	CCTTC	4 cut(s)	25, 169, 242, 300
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	7 cut(s)	7, 313, 374, 542, 806, 855, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 283, 310, 1012
HpyF3I	CTNAG	5 cut(s)	17, 219, 300, 357, 525
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	5 cut(s)	113, 476, 488, 826, 834
KpnI	GGTACC	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	393, 468, 687, 844
LguI	GCTCTTC	2 cut(s)	427, 996
Lsp1109I	GCAGC	2 cut(s)	286, 1024
LweI	GCATC	2 cut(s)	41, 181
MaeI	CTAG	3 cut(s)	143, 957, 1020
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	503, 634, 757
MalI	GATC	4 cut(s)	395, 470, 689, 846
MboI	GATC	4 cut(s)	393, 468, 687, 844
MboII	GAAGA	9 cut(s)	47, 50, 200, 414, 526, 668, 704, 937, 1013
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	159, 376
MlyI	GAGTC	2 cut(s)	275, 377
MmeI	TCCRAC	1 cut(s)	595
Mph1103I	ATGCAT	1 cut(s)	9
MseI	TTAA	5 cut(s)	567, 777, 792, 884, 1042
MslI	CAYNNNNRTG	1 cut(s)	415
MspCI	CTTAAG	2 cut(s)	566, 883
MspI	CCGG	1 cut(s)	963
MspR9I	CCNGG	4 cut(s)	864, 918, 963, 964
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	2 cut(s)	864, 918
MwoI	GCNNNNNNNGC	4 cut(s)	13, 283, 310, 1012
NciI	CCSGG	2 cut(s)	963, 964
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	4 cut(s)	393, 468, 687, 844
NlaIII	CATG	5 cut(s)	113, 476, 488, 826, 834
NlaIV	GGNNCC	4 cut(s)	156, 157, 557, 977
NmuCI	GTSAC	3 cut(s)	503, 634, 757
NsiI	ATGCAT	1 cut(s)	9
PagI	TCATGA	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	1025
PciSI	GCTCTTC	2 cut(s)	427, 996
PfeI	GAWTC	7 cut(s)	46, 106, 122, 149, 323, 332, 461
Pfl23II	CGTACG	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	276, 1014
PleI	GAGTC	2 cut(s)	274, 377
PpsI	GAGTC	2 cut(s)	274, 377
PshAI	GACNNNNGTC	2 cut(s)	480, 957
Psp6I	CCWGG	2 cut(s)	862, 916
PspFI	CCCAGC	1 cut(s)	972
PspGI	CCWGG	2 cut(s)	862, 916
PspLI	CGTACG	1 cut(s)	595
PspN4I	GGNNCC	4 cut(s)	156, 157, 557, 977
PspOMI	GGGCCC	1 cut(s)	155
PspPI	GGNCC	3 cut(s)	155, 156, 976
PstI	CTGCAG	1 cut(s)	934
RsaI	GTAC	2 cut(s)	557, 597
RsaNI	GTAC	2 cut(s)	556, 596
RseI	CAYNNNNRTG	1 cut(s)	415
SapI	GCTCTTC	2 cut(s)	427, 996
SaqAI	TTAA	5 cut(s)	567, 777, 792, 884, 1042
SatI	GCNGC	2 cut(s)	275, 1013
Sau3AI	GATC	4 cut(s)	393, 468, 687, 844
Sau96I	GGNCC	3 cut(s)	155, 156, 976
SchI	GAGTC	2 cut(s)	275, 377
ScrFI	CCNGG	4 cut(s)	864, 918, 963, 964
SduI	GDGCHC	2 cut(s)	159, 376
SfaNI	GCATC	2 cut(s)	41, 181
SfcI	CTRYAG	2 cut(s)	930, 1007
SinI	GGWCC	1 cut(s)	976
SmaI	CCCGGG	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	4 cut(s)	305, 566, 883, 1029
SmoI	CTYRAG	4 cut(s)	305, 566, 883, 1029
SpeI	ACTAGT	1 cut(s)	956
SspMI	CTAG	3 cut(s)	143, 957, 1020
StyD4I	CCNGG	4 cut(s)	862, 916, 961, 962
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	3 cut(s)	49, 690, 719
TfiI	GAWTC	7 cut(s)	46, 106, 122, 149, 323, 332, 461
Tru1I	TTAA	5 cut(s)	567, 777, 792, 884, 1042
Tru9I	TTAA	5 cut(s)	567, 777, 792, 884, 1042
TscAI	CASTG	3 cut(s)	436, 862, 939
TseFI	GTSAC	3 cut(s)	503, 634, 757
TseI	GCWGC	2 cut(s)	274, 1012
Tsp45I	GTSAC	3 cut(s)	503, 634, 757
TspDTI	ATGAA	8 cut(s)	44, 98, 126, 200, 201, 453, 819, 1014
TspMI	CCCGGG	1 cut(s)	962
TspRI	CASTG	3 cut(s)	436, 862, 939
Vha464I	CTTAAG	2 cut(s)	566, 883
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	976
XapI	RAATTY	5 cut(s)	77, 207, 607, 618, 709
XmaI	CCCGGG	1 cut(s)	962
XspI	CTAG	3 cut(s)	143, 957, 1020
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.