Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031551.1

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 762

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031551.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 661 bp

ggcccttccttcttccagtttccatctcaaatgaagatgcattacctaacagaattcataatccagaggaggaagatgactatcaagtagtagaaggatctgatgatgagtcagagcagccttcgttgcccccttcttttcctgaacttgagttggagattaaggaatccattgcatcgcttggaggtgctgtgttcccgaagctaaactggagtgcaccaaaagattctgcttggattagcacaacagggactctcaggtgctcttccttcagtgagattgtactgttgctacgatcatctgactcactggtgcatgatttgtgtcatgcgtatgattcctgcaatgacaagacctcctcaaggcccaagagcttcttccttgctctccgtaaatggtacccatcccttcagccagagatggaattccgctgctttgtaaggaatcagaatttagttggaatttcccaacgcgaggccacgaccttctacccttctctgcttgaaagcaaagagcatcttggagtgttgcttgaagacttctttatggaaaatttaaggtcaagatttgagtcagaaaattacacctttgatgtgtatgtgacaaaggacgagcgagttaaggttatggatttcaacccttggggagcatttacactgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

220

Amino Acids

25.17

Weight (kDa)

4.61

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	473
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	5 cut(s)	53, 424, 450, 461, 552
AcuI	CTGAAG	2 cut(s)	255, 394
AfaI	GTAC	2 cut(s)	284, 400
AfiI	CCNNNNNNNGG	2 cut(s)	362, 474
AgsI	TTSAA	3 cut(s)	505, 535, 636
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	2 cut(s)	204, 374
AluI	AGCT	2 cut(s)	204, 374
Alw21I	GWGCWC	2 cut(s)	219, 265
Alw44I	GTGCAC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	2 cut(s)	364, 476
ApaLI	GTGCAC	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	117, 431
ApoI	RAATTY	5 cut(s)	53, 424, 450, 461, 552
Asp718I	GGTACC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	2, 365
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	219, 265
BbvI	GCAGC	2 cut(s)	129, 418
BccI	CCATC	3 cut(s)	31, 411, 414
BisI	GCNGC	2 cut(s)	118, 432
BlsI	GCNGC	2 cut(s)	119, 433
BmgT120I	GGNCC	2 cut(s)	2, 365
BmiI	GGNNCC	1 cut(s)	400
BmsI	GCATC	3 cut(s)	27, 184, 525
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	169, 345
BsaBI	GATNNNNATC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	640
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 474
Bse1I	ACTGG	3 cut(s)	16, 214, 314
Bse3DI	GCAATG	2 cut(s)	170, 351
Bse8I	GATNNNNATC	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	362, 474
BseMI	GCAATG	2 cut(s)	170, 351
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	16, 214, 314
BseRI	GAGGAG	2 cut(s)	82, 348
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	129, 418
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	3, 366, 478
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	219, 265
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	362, 474
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	3, 366, 478
Bsp1286I	GDGCHC	2 cut(s)	219, 265
Bsp143I	GATC	2 cut(s)	97, 295
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	3 cut(s)	3, 366, 478
BspCNI	CTCAG	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	170, 351
BsrI	ACTGG	3 cut(s)	16, 214, 314
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	2 cut(s)	97, 295
BssT1I	CCWWGG	1 cut(s)	640
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	473
BstKTI	GATC	2 cut(s)	100, 298
BstMBI	GATC	2 cut(s)	97, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	129, 418
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	3, 366, 478
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	279, 307, 655
Cfr13I	GGNCC	2 cut(s)	2, 365
Csp6I	GTAC	2 cut(s)	283, 399
CviAII	CATG	2 cut(s)	316, 328
CviJI	RGCY	7 cut(s)	3, 120, 204, 366, 374, 414, 478
CviKI_1	RGCY	7 cut(s)	3, 120, 204, 366, 374, 414, 478
CviQI	GTAC	2 cut(s)	283, 399
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	99, 297
DpnII	GATC	2 cut(s)	97, 295
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	255, 394
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoRI	GAATTC	2 cut(s)	53, 424
EcoT14I	CCWWGG	1 cut(s)	640
EcoT22I	ATGCAT	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	2 cut(s)	319, 331
FaiI	YATR	7 cut(s)	59, 317, 329, 335, 547, 599, 628
FalI	AAGNNNNNCTT	4 cut(s)	361, 393, 503, 535
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	315, 327
Fnu4HI	GCNGC	2 cut(s)	118, 432
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	118, 432
GluI	GCNGC	2 cut(s)	118, 432
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	3, 366, 478
Hin1II	CATG	2 cut(s)	319, 331
HinfI	GANTC	8 cut(s)	109, 166, 226, 252, 304, 337, 444, 571
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	5 cut(s)	102, 114, 303, 449, 576
Hpy188III	TCNNGA	4 cut(s)	64, 142, 198, 563
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	9 cut(s)	15, 19, 88, 131, 143, 279, 418, 495, 503
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	5 cut(s)	40, 175, 217, 315, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	319, 331
KpnI	GGTACC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	97, 295
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	646
LpnPI	CCDG	9 cut(s)	29, 77, 155, 195, 233, 243, 295, 354, 428
Lsp1109I	GCAGC	2 cut(s)	129, 418
LweI	GCATC	3 cut(s)	27, 184, 525
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	2 cut(s)	99, 297
MboI	GATC	2 cut(s)	97, 295
MboII	GAAGA	6 cut(s)	4, 46, 85, 257, 369, 547
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	219, 265
MluCI	AATT	6 cut(s)	53, 424, 450, 461, 552, 579
MlyI	GAGTC	4 cut(s)	118, 246, 298, 580
MmeI	TCCRAC	2 cut(s)	134, 438
MnlI	CCTC	6 cut(s)	60, 63, 178, 366, 369, 468
Mph1103I	ATGCAT	1 cut(s)	42
MseI	TTAA	3 cut(s)	161, 556, 620
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	97, 295
NlaIII	CATG	2 cut(s)	319, 331
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	600
NsiI	ATGCAT	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	4 cut(s)	166, 226, 337, 444
PkrI	GCNGC	2 cut(s)	119, 433
PleI	GAGTC	4 cut(s)	117, 246, 298, 579
PpsI	GAGTC	4 cut(s)	117, 246, 298, 579
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	2, 365
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	284, 400
RsaNI	GTAC	2 cut(s)	283, 399
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	161, 556, 620
SatI	GCNGC	2 cut(s)	118, 432
Sau3AI	GATC	2 cut(s)	97, 295
Sau96I	GGNCC	2 cut(s)	2, 365
SchI	GAGTC	4 cut(s)	118, 246, 298, 580
SduI	GDGCHC	2 cut(s)	219, 265
SfaNI	GCATC	3 cut(s)	27, 184, 525
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	148, 360
SmoI	CTYRAG	2 cut(s)	148, 360
Sse9I	AATT	6 cut(s)	53, 424, 450, 461, 552, 579
SsiI	CCGC	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	1 cut(s)	287
TasI	AATT	6 cut(s)	53, 424, 450, 461, 552, 579
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	4 cut(s)	166, 226, 337, 444
Tru1I	TTAA	3 cut(s)	161, 556, 620
Tru9I	TTAA	3 cut(s)	161, 556, 620
TscAI	CASTG	2 cut(s)	279, 314
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	2 cut(s)	117, 431
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	2 cut(s)	46, 47
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	2 cut(s)	279, 314
VneI	GTGCAC	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	360
XapI	RAATTY	5 cut(s)	53, 424, 450, 461, 552
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.