Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003334

Physical Location & Seq

Genomic Coordinates Reverse (-)

1739795 .. 1740605

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTGGTGTAAGGAAGCGTACTGGGTACTCGAAGATCGATAAGGAAGACCCGGAAGAGGTCATTCATCGACGAGCGCAGTTCTTGGTCTACAAAGTGATGCAGCAAGCCGACTATCGTAGAAGGCCTTCCAATTTGAAGATTAGAATACGGAAATTGAAGGTTAAGTTCGGGATGAGATTGAAGAAGTTGAGGAAGAGCATGCTGCTAAATATATCTGCAGCGAGAGTTGTCGTTTATAAACAAGTGTTTAGGCAGTTGAAAACTTGCAAGAGCTTGTTTGGCCGCGGAGAGGAGCCATTGCCAGCCTTCAACCTTTGTTCACTTGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

D123

Protein Analysis

111

Amino Acids

13.05

Weight (kDa)

10.9

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05440 AT4G05440
fragaria_vesca	FvH4_2g14961
malus_domestica	MD09G1087500.v1.1 MD17G1076300.v1.1
prunus_persica	Prupe.1G099600_v2.0.a1 Prupe.1G099600_v2.0.a1 Prupe.3G237900_v2.0.a1
pyrus_communis	pycom09g01300 pycom17g07690
rosa_chinensis	RchiOBHm_Chr5g0015381 RchiOBHm_Chr5g0052651 RchiOBHm_Chr5g0052721
rosa_laevigata	RLG00000032197 RLG00000034805
rosa_multiflora	Rmu_sc0000694.1_g000009 Rmu_sc0007708.1_g000002 Rmu_sc0031551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028500
rosa_rugosa	Rorug05G0027000
rosa_samantha	Rh5AG120600 Rh5AG342800 Rh5AG343000 Rh5BG119500 Rh5BG353300 Rh5BG353800 Rh5CG130100 Rh5CG379800 Rh5DG118600 Rh5DG369400 Rh5DG369500
rosa_wichuraiana	Rw1G004150 Rw5G010430 Rw5G032290 Rw5G032370 Rw5G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	288
AciI	CCGC	2 cut(s)	286, 288
AcoI	YGGCCR	1 cut(s)	283
AfaI	GTAC	2 cut(s)	22, 29
AfiI	CCNNNNNNNGG	2 cut(s)	58, 292
AgsI	TTSAA	5 cut(s)	139, 160, 184, 262, 313
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
AoxI	GGCC	2 cut(s)	125, 283
ApeKI	GCWGC	3 cut(s)	103, 205, 221
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	112, 144
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	115, 192, 233
BcnI	CCSGG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	4 cut(s)	104, 206, 222, 286
BlsI	GCNGC	4 cut(s)	105, 207, 223, 287
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 292
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	58, 292
BseMI	GCAATG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	115, 192, 233
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	127, 285
BshVI	ATCGAT	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	58, 292
BsnI	GGCC	2 cut(s)	127, 285
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	286, 288
BspANI	GGCC	2 cut(s)	127, 285
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	36
Bst6I	CTCTTC	2 cut(s)	51, 191
BstC8I	GCNNGC	3 cut(s)	108, 203, 306
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	115, 192, 233
BstV2I	GAAGAC	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	127, 285
BsuTUI	ATCGAT	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	3 cut(s)	108, 203, 306
CfoI	GCGC	1 cut(s)	79
Cfr42I	CCGCGG	1 cut(s)	289
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	21, 28
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	5, 110, 127, 276, 285, 298, 308
CviKI_1	RGCY	7 cut(s)	5, 110, 127, 276, 285, 298, 308
CviQI	GTAC	2 cut(s)	21, 28
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	51, 191
EarI	CTCTTC	2 cut(s)	51, 191
Eco147I	AGGCCT	1 cut(s)	127
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	203, 215, 240
FatI	CATG	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	104, 206, 222, 286
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	104, 206, 222, 286
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	4 cut(s)	104, 206, 222, 286
HaeIII	GGCC	2 cut(s)	127, 285
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	2 cut(s)	91, 323
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	2 cut(s)	91, 323
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	117, 138, 154, 319
HpyCH4V	TGCA	4 cut(s)	103, 221, 270, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	77
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	3 cut(s)	9, 66, 318
Lsp1109I	GCAGC	3 cut(s)	115, 192, 233
LweI	GCATC	1 cut(s)	90
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	6 cut(s)	46, 59, 68, 151, 196, 208
MluCI	AATT	2 cut(s)	133, 155
MnlI	CCTC	3 cut(s)	52, 186, 286
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	282
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	297
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	105, 207, 223, 287
PsiI	TTATAA	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	22, 29
RsaNI	GTAC	2 cut(s)	21, 28
SacII	CCGCGG	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	104, 206, 222, 286
Sau3AI	GATC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	4 cut(s)	63, 165, 278, 318
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	219
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	133, 155
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	286, 288
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	51
TaqI	TCGA	3 cut(s)	32, 39, 70
TasI	AATT	2 cut(s)	133, 155
TauI	GCSGC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	3 cut(s)	103, 205, 221
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.