RchiOBHm_Chr5g0015381

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003334
Physical Location & Seq
Reverse (-)
10645299 .. 10647221
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29580

Sequence Viewer

Length: 1011 bp
ATGAAGGAAGAAGAAGTGAATCGATGCCAGATACAGGAATGGTACCCTAAGTTTAAATCCGTGTCTATCAAAACATGGATTCATGAACTTCCAGAATCCTTTGTCCAGTATCTTCTTGATGATTCAGGGCCCTTCCTTCTTCCAGTTTCCATCTCAAATGAAGATGCATTACCTAACAGAATTCATAATCCAGAGGAGGAAGATGACTATCAAGTAGTAGAAGGATCTGATGATGAGTCAGAGCAGCCTTCGTTGCCCCCTTCTTTTCCTGAACTTGAGTTGGAGATTAAGGAATCCATTGCATCGCTTGGAGGTGCTGTGTTCCCGAAGCTAAACTGGAGTGCACCAAAAGATTCTGCTTGGATTAGCACAACAGGGACTCTCAGGTGCTCTTCCTTCAGTGAGATTGCACTGTTGCTACGATCATCTGACTCACTGGTGCATGATTTGTGTCATGCGTATGATTCCTGCAATGACAAGACCTCCTCACGGCCCAAGAGCTTCTTCCTTGCTCTCCGTAAATGGTACCCATCCCTTCAGCCAGAGATGGAATTCCGCTGCTTTGTAAGGAATCAGAATTTAGTTGGAATTTCCCAACGCGAGGCCACAACCTTCTACCCTTCTCTGCTTGAAAGCAAAGAGCATCTTGGAGTGTTGATTGAAGACTTCTTTATGGAAAATTTAAGGTCAAGATTTGAGTCAGAAAATTACACCTTTGATGTGTATGTGACAAAGGACGAGCGAGTTAAGGTTATGGATTTCAACCCTTGGGGAGCATTTACACTGCCTCTGATGTTTACATGGGAGGAACTGGAACAGAATGATAATGAACAAGGAGATGGTGTGGACTTCAGAATTGTGGAGAGCCAGTGTGGTGTTAGGCCAGGTTTGAAGACGGCAGTGCCCTACGATTATGTGGACACTAGCTCCGGGAGTGGCTGGGACCAGTTTTTCAGGAGCGCCAATGAAGAGTTACAGCGTCAAAGTAGGTCTCCTGAAGCAGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

336

Amino Acids

38.57

Weight (kDa)

4.52

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 14 - 309 3.1e-98 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 992
Acc65I GGTACC 2 cut(s) 42, 525
AccB1I GGYRCC 2 cut(s) 42, 525
AccII CGCG 1 cut(s) 600
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 5 cut(s) 180, 551, 577, 588, 679
AcuI CTGAAG 3 cut(s) 382, 521, 835
AfaI GTAC 2 cut(s) 44, 527
AfiI CCNNNNNNNGG 4 cut(s) 34, 489, 601, 1001
AgsI TTSAA 4 cut(s) 632, 662, 763, 892
AjnI CCWGG 1 cut(s) 883
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 331, 501, 927
AluI AGCT 3 cut(s) 331, 501, 927
Alw21I GWGCWC 2 cut(s) 346, 392
Alw26I GTCTC 1 cut(s) 996
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 1 cut(s) 232
AoxI GGCC 4 cut(s) 128, 491, 603, 881
ApaI GGGCCC 1 cut(s) 132
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 244, 558
ApoI RAATTY 5 cut(s) 180, 551, 577, 588, 679
Asp718I GGTACC 2 cut(s) 42, 525
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 4 cut(s) 128, 129, 492, 943
AsuC2I CCSGG 1 cut(s) 931
AvaII GGWCC 1 cut(s) 943
BaeGI GKGCMC 3 cut(s) 132, 346, 906
BanI GGYRCC 2 cut(s) 42, 525
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 2 cut(s) 669, 899
Bbv12I GWGCWC 2 cut(s) 346, 392
BbvI GCAGC 2 cut(s) 256, 545
BccI CCATC 4 cut(s) 158, 538, 541, 833
BceAI ACGGC 2 cut(s) 506, 912
BciT130I CCWGG 1 cut(s) 885
BcnI CCSGG 1 cut(s) 931
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 963
BfuAI ACCTGC 1 cut(s) 992
BisI GCNGC 2 cut(s) 245, 559
BlsI GCNGC 2 cut(s) 246, 560
Bme1390I CCNGG 2 cut(s) 885, 931
Bme18I GGWCC 1 cut(s) 943
BmgT120I GGNCC 4 cut(s) 128, 129, 492, 943
BmiI GGNNCC 4 cut(s) 44, 130, 527, 944
BmrFI CCNGG 2 cut(s) 885, 931
BmsI GCATC 4 cut(s) 14, 154, 311, 652
BpiI GAAGAC 2 cut(s) 669, 899
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 931
Bsa29I ATCGAT 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 996
BsaJI CCNNGG 1 cut(s) 767
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 489, 601, 1001
Bse1I ACTGG 7 cut(s) 106, 143, 341, 441, 816, 868, 946
Bse3DI GCAATG 2 cut(s) 297, 478
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 885
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 767
BseGI GGATG 1 cut(s) 530
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 4 cut(s) 34, 489, 601, 1001
BseMI GCAATG 2 cut(s) 297, 478
BseMII CTCAG 1 cut(s) 397
BseNI ACTGG 7 cut(s) 106, 143, 341, 441, 816, 868, 946
BseRI GAGGAG 2 cut(s) 209, 475
BseSI GKGCMC 3 cut(s) 132, 346, 906
BseXI GCAGC 2 cut(s) 256, 545
BseYI CCCAGC 1 cut(s) 939
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 4 cut(s) 130, 493, 605, 883
BshNI GGYRCC 2 cut(s) 42, 525
BshVI ATCGAT 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 346, 392
BsiSI CCGG 1 cut(s) 930
BslFI GGGAC 2 cut(s) 391, 956
BslI CCNNNNNNNGG 4 cut(s) 34, 489, 601, 1001
BsmAI GTCTC 1 cut(s) 996
BsmFI GGGAC 2 cut(s) 391, 956
BsnI GGCC 4 cut(s) 130, 493, 605, 883
Bso31I GGTCTC 1 cut(s) 996
Bsp120I GGGCCC 1 cut(s) 128
Bsp1286I GDGCHC 4 cut(s) 132, 346, 392, 906
Bsp143I GATC 2 cut(s) 224, 422
BspACI CCGC 1 cut(s) 556
BspANI GGCC 4 cut(s) 130, 493, 605, 883
BspCNI CTCAG 1 cut(s) 396
BspDI ATCGAT 1 cut(s) 22
BspFNI CGCG 1 cut(s) 600
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 4 cut(s) 44, 130, 527, 944
BspMI ACCTGC 1 cut(s) 992
BspPI GGATC 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 397
BspT107I GGYRCC 2 cut(s) 42, 525
BspTNI GGTCTC 1 cut(s) 996
BsrDI GCAATG 2 cut(s) 297, 478
BsrI ACTGG 7 cut(s) 106, 143, 341, 441, 816, 868, 946
BssECI CCNNGG 1 cut(s) 767
BssMI GATC 2 cut(s) 224, 422
BssT1I CCWWGG 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 885
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 2 cut(s) 397, 963
BstDEI CTNAG 2 cut(s) 48, 383
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 1 cut(s) 530
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 963
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 2 cut(s) 227, 425
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 2 cut(s) 224, 422
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 885
BstSCI CCNGG 2 cut(s) 883, 929
BstSLI GKGCMC 3 cut(s) 132, 346, 906
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 256, 545
BstV2I GAAGAC 2 cut(s) 669, 899
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 4 cut(s) 130, 493, 605, 883
BsuTUI ATCGAT 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 530
BtsI GCAGTG 2 cut(s) 782, 906
BtsIMutI CAGTG 6 cut(s) 406, 410, 434, 782, 875, 906
BveI ACCTGC 1 cut(s) 992
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 962
Cfr13I GGNCC 4 cut(s) 128, 129, 492, 943
ClaI ATCGAT 1 cut(s) 22
CseI GACGC 1 cut(s) 968
Csp6I GTAC 2 cut(s) 43, 526
CviAII CATG 5 cut(s) 75, 83, 443, 455, 801
CviQI GTAC 2 cut(s) 43, 526
DdeI CTNAG 2 cut(s) 48, 383
DpnI GATC 2 cut(s) 226, 424
DpnII GATC 2 cut(s) 224, 422
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 397, 963
EarI CTCTTC 2 cut(s) 397, 963
Eco130I CCWWGG 1 cut(s) 767
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 943
Eco57I CTGAAG 3 cut(s) 382, 521, 835
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoO109I RGGNCCY 2 cut(s) 128, 129
EcoRI GAATTC 2 cut(s) 180, 551
EcoRII CCWGG 1 cut(s) 883
EcoT14I CCWWGG 1 cut(s) 767
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 767
FaeI CATG 5 cut(s) 78, 86, 446, 458, 804
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 630, 662
FaqI GGGAC 2 cut(s) 391, 956
FatI CATG 5 cut(s) 74, 82, 442, 454, 800
Fnu4HI GCNGC 2 cut(s) 245, 559
FokI GGATG 1 cut(s) 517
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 245, 559
FspBI CTAG 1 cut(s) 924
GlaI GCGC 1 cut(s) 961
GluI GCNGC 2 cut(s) 245, 559
GsaI CCCAGC 1 cut(s) 943
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 963
HaeIII GGCC 4 cut(s) 130, 493, 605, 883
HapII CCGG 1 cut(s) 930
HgaI GACGC 1 cut(s) 968
HhaI GCGC 1 cut(s) 962
Hin1II CATG 5 cut(s) 78, 86, 446, 458, 804
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HpaII CCGG 1 cut(s) 930
Hpy166II GTNNAC 4 cut(s) 344, 798, 847, 919
Hpy188I TCNGA 7 cut(s) 229, 241, 430, 576, 703, 792, 854
Hpy188III TCNNGA 9 cut(s) 83, 92, 116, 191, 269, 325, 690, 955, 995
Hpy8I GTNNAC 4 cut(s) 344, 798, 847, 919
HpyAV CCTTC 9 cut(s) 142, 146, 215, 258, 270, 406, 545, 622, 630
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4V TGCA 6 cut(s) 167, 302, 344, 410, 442, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 48, 383
Hsp92II CATG 5 cut(s) 78, 86, 446, 458, 804
HspAI GCGC 1 cut(s) 960
KpnI GGTACC 2 cut(s) 46, 529
Kzo9I GATC 2 cut(s) 224, 422
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 3 cut(s) 773, 932, 957
Lsp1109I GCAGC 2 cut(s) 256, 545
LweI GCATC 4 cut(s) 14, 154, 311, 652
MaeI CTAG 1 cut(s) 924
MaeIII GTNAC 2 cut(s) 727, 972
MalI GATC 2 cut(s) 226, 424
MboI GATC 2 cut(s) 224, 422
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 4 cut(s) 132, 346, 392, 906
MluCI AATT 7 cut(s) 180, 551, 577, 588, 679, 706, 855
MlyI GAGTC 4 cut(s) 245, 373, 425, 707
MmeI TCCRAC 2 cut(s) 261, 565
MnlI CCTC 8 cut(s) 187, 190, 305, 493, 496, 595, 798, 799
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 5 cut(s) 54, 288, 683, 747, 1009
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 558
MspI CCGG 1 cut(s) 930
MspR9I CCNGG 2 cut(s) 885, 931
MvaI CCWGG 1 cut(s) 885
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 1 cut(s) 253
NciI CCSGG 1 cut(s) 931
NdeII GATC 2 cut(s) 224, 422
NlaIII CATG 5 cut(s) 78, 86, 446, 458, 804
NlaIV GGNNCC 4 cut(s) 44, 130, 527, 944
NmuCI GTSAC 1 cut(s) 727
NsiI ATGCAT 1 cut(s) 169
PagI TCATGA 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 992
PciSI GCTCTTC 1 cut(s) 397
PfeI GAWTC 8 cut(s) 19, 79, 95, 122, 293, 353, 464, 571
PfoI TCCNGGA 1 cut(s) 929
PkrI GCNGC 2 cut(s) 246, 560
PleI GAGTC 4 cut(s) 244, 373, 425, 706
PpsI GAGTC 4 cut(s) 244, 373, 425, 706
Psp6I CCWGG 1 cut(s) 883
PspFI CCCAGC 1 cut(s) 939
PspGI CCWGG 1 cut(s) 883
PspN4I GGNNCC 4 cut(s) 44, 130, 527, 944
PspOMI GGGCCC 1 cut(s) 128
PspPI GGNCC 4 cut(s) 128, 129, 492, 943
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 2 cut(s) 44, 527
RsaNI GTAC 2 cut(s) 43, 526
RseI CAYNNNNRTG 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 5 cut(s) 54, 288, 683, 747, 1009
SatI GCNGC 2 cut(s) 245, 559
Sau3AI GATC 2 cut(s) 224, 422
Sau96I GGNCC 4 cut(s) 128, 129, 492, 943
SchI GAGTC 4 cut(s) 245, 373, 425, 707
ScrFI CCNGG 2 cut(s) 885, 931
SduI GDGCHC 4 cut(s) 132, 346, 392, 906
SfaNI GCATC 4 cut(s) 14, 154, 311, 652
SinI GGWCC 1 cut(s) 943
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 7 cut(s) 180, 551, 577, 588, 679, 706, 855
SsiI CCGC 1 cut(s) 556
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 2 cut(s) 883, 929
StyI CCWWGG 1 cut(s) 767
TaaI ACNGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 22
TasI AATT 7 cut(s) 180, 551, 577, 588, 679, 706, 855
TfiI GAWTC 8 cut(s) 19, 79, 95, 122, 293, 353, 464, 571
Tru1I TTAA 5 cut(s) 54, 288, 683, 747, 1009
Tru9I TTAA 5 cut(s) 54, 288, 683, 747, 1009
TscAI CASTG 6 cut(s) 406, 417, 441, 789, 875, 906
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 2 cut(s) 244, 558
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 7 cut(s) 17, 71, 99, 173, 174, 843, 981
TspGWI ACGGA 2 cut(s) 49, 506
TspRI CASTG 6 cut(s) 406, 417, 441, 789, 875, 906
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 943
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 5 cut(s) 180, 551, 577, 588, 679
XspI CTAG 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.