FvH4_2g14961

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003334
Physical Location & Seq
Reverse (-)
13142643 .. 13143653
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14961.t1

Sequence Viewer

Length: 1011 bp
ATGAAGGAAGAAGAAGTGAATCGATGTCAGATACAGGAATGGTACCCTAAGTTTAAATCCGTGTCTATTAAAACACGGATCCATGAACTTCCAGAATCCTTTGTCCAATATCTTCTTGATGATTCAGGGCCTTTCCTTCTTCCAGCTTCTATCTCAAATGAAGATGCCTTACCCAACAGAATTCATAATCCAGAGGAGGAAGATGATTATCAAGTAGTAGAAGGATCTGATGATGAGTCAGAGCGGTCTTCTTTGCCCCCTTCTTTTCCTGAACTTGAGTTGGAAATTAAGGAATCTATTGCATCCCTTGGAGGTGCTGTGTTCCCGAAGCTAAACTGGAGCGCACCAAAAGATTCTGCTTGGATTAGCACAACTGGGACTCTGAGATGCTCTTCCTTCTGTGAGATTGCATTGTTGCTACGATCATCTGACTCATTGGTGCATGATTTGTGTCATGCTTATGATTCATGCAGTGACAAAACCTCCTCAAGGCCCGGGAGCTTCTTCCTTGCTCTTCGTAAATGGTACCCATCCCTTCAGCCAGAGATGGAATTCCGCTGCTTTGTAAGGAATCAAAATTTAGTTGGAATTTCCCAACGTGAGGCCACAACCTTCTACCCTTCTCTGCTTGAAAGCAAAGATCATCTTGGAGTGTTGATTGAAGACTTCTTTATGGAACATTTAAGGTCGAGATTCGAGTCAGAAAACTACACCTTTGATGTATACCTGACCAAGGACAAGCGAGTTAAAGTTATTGATTTCAACCCTTGGGGTGCATTTACACTGCCTCTGATGTTTACATGGGAGGAACTGGTACAGAATGATAATGAACAAGGGGATGGTGTGGACTTCAGAATTGTGGAGAGCCAGTGTCGTGTCAGGCCAGGTTTGAAGACAGCAGTACCATTCGATTATGTAGACACCAGCTCCGGGAGTGGCTGGGACCAGTTTTTCAGGAATGCCGATGAAGAGTTACAGCGACAGAATAGGTCTCCTGAAGCTGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

337

Amino Acids

38.56

Weight (kDa)

4.66

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 14 - 309 4.7e-98 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 42, 525
AccB1I GGYRCC 2 cut(s) 42, 525
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 2 cut(s) 723, 918
AciI CCGC 2 cut(s) 244, 556
AclWI GGATC 3 cut(s) 73, 86, 232
AcsI RAATTY 4 cut(s) 180, 551, 577, 588
AcuI CTGAAG 2 cut(s) 521, 835
AfaI GTAC 4 cut(s) 44, 527, 816, 903
AfiI CCNNNNNNNGG 5 cut(s) 489, 601, 733, 930, 1001
AgsI TTSAA 4 cut(s) 632, 662, 763, 892
AjnI CCWGG 1 cut(s) 883
AluBI AGCT 5 cut(s) 146, 331, 501, 927, 1001
AluI AGCT 5 cut(s) 146, 331, 501, 927, 1001
Alw26I GTCTC 1 cut(s) 996
AlwI GGATC 3 cut(s) 73, 86, 232
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 4 cut(s) 128, 491, 603, 881
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 4 cut(s) 180, 551, 577, 588
Asp718I GGTACC 2 cut(s) 42, 525
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 3 cut(s) 128, 492, 943
AsuC2I CCSGG 3 cut(s) 495, 496, 931
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 943
BaeI ACNNNNGTAYC 2 cut(s) 885, 918
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 2 cut(s) 42, 525
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 3 cut(s) 240, 669, 899
BbvI GCAGC 1 cut(s) 545
BccI CCATC 3 cut(s) 538, 541, 833
BciT130I CCWGG 1 cut(s) 885
BcnI CCSGG 3 cut(s) 495, 496, 931
BcoDI GTCTC 1 cut(s) 996
BisI GCNGC 1 cut(s) 559
BlsI GCNGC 1 cut(s) 560
Bme1390I CCNGG 4 cut(s) 495, 496, 885, 931
Bme18I GGWCC 1 cut(s) 943
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 3 cut(s) 128, 492, 943
BmiI GGNNCC 4 cut(s) 44, 80, 527, 944
BmrFI CCNGG 4 cut(s) 495, 496, 885, 931
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 154, 311, 377
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 3 cut(s) 240, 669, 899
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 2 cut(s) 296, 472
BpuMI CCSGG 3 cut(s) 495, 496, 931
Bsa29I ATCGAT 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 996
BsaJI CCNNGG 4 cut(s) 307, 494, 732, 767
BsaXI ACNNNNNCTCC 8 cut(s) 303, 333, 467, 497, 854, 884, 911, 941
Bsc4I CCNNNNNNNGG 5 cut(s) 489, 601, 733, 930, 1001
Bse1I ACTGG 5 cut(s) 341, 379, 816, 868, 946
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 885
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 4 cut(s) 307, 494, 732, 767
BseGI GGATG 3 cut(s) 302, 530, 844
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 489, 601, 733, 930, 1001
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 5 cut(s) 341, 379, 816, 868, 946
BseRI GAGGAG 2 cut(s) 209, 475
BseXI GCAGC 1 cut(s) 545
BseYI CCCAGC 1 cut(s) 939
BshFI GGCC 4 cut(s) 130, 493, 605, 883
BshNI GGYRCC 2 cut(s) 42, 525
BshVI ATCGAT 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 2 cut(s) 495, 930
BslFI GGGAC 2 cut(s) 391, 956
BslI CCNNNNNNNGG 5 cut(s) 489, 601, 733, 930, 1001
BsmAI GTCTC 1 cut(s) 996
BsmFI GGGAC 2 cut(s) 391, 956
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 4 cut(s) 130, 493, 605, 883
Bso31I GGTCTC 1 cut(s) 996
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 4 cut(s) 78, 224, 422, 640
BspACI CCGC 2 cut(s) 244, 556
BspANI GGCC 4 cut(s) 130, 493, 605, 883
BspCNI CTCAG 1 cut(s) 375
BspDI ATCGAT 1 cut(s) 22
BspLI GGNNCC 4 cut(s) 44, 80, 527, 944
BspPI GGATC 3 cut(s) 73, 86, 232
BspQI GCTCTTC 2 cut(s) 397, 519
BspT107I GGYRCC 2 cut(s) 42, 525
BspTNI GGTCTC 1 cut(s) 996
BsrBI CCGCTC 1 cut(s) 244
BsrI ACTGG 5 cut(s) 341, 379, 816, 868, 946
BssECI CCNNGG 4 cut(s) 307, 494, 732, 767
BssMI GATC 4 cut(s) 78, 224, 422, 640
BssNAI GTATAC 1 cut(s) 724
BssT1I CCWWGG 3 cut(s) 307, 732, 767
Bst1107I GTATAC 1 cut(s) 724
Bst2UI CCWGG 1 cut(s) 885
Bst6I CTCTTC 3 cut(s) 397, 519, 963
BstDEI CTNAG 2 cut(s) 48, 383
BstENI CCTNNNNNAGG 2 cut(s) 487, 731
BstF5I GGATG 3 cut(s) 302, 530, 844
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 4 cut(s) 81, 227, 425, 643
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 4 cut(s) 78, 224, 422, 640
BstNI CCWGG 1 cut(s) 885
BstSCI CCNGG 4 cut(s) 493, 494, 883, 929
BstV1I GCAGC 1 cut(s) 545
BstV2I GAAGAC 3 cut(s) 240, 669, 899
BstX2I RGATCY 2 cut(s) 78, 224
BstYI RGATCY 2 cut(s) 78, 224
BstZ17I GTATAC 1 cut(s) 724
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 4 cut(s) 130, 493, 605, 883
BsuTUI ATCGAT 1 cut(s) 22
BtsCI GGATG 3 cut(s) 302, 530, 844
BtsI GCAGTG 2 cut(s) 478, 782
BtsIMutI CAGTG 3 cut(s) 478, 782, 875
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 3 cut(s) 128, 492, 943
Cfr9I CCCGGG 1 cut(s) 494
ClaI ATCGAT 1 cut(s) 22
Csp6I GTAC 4 cut(s) 43, 526, 815, 902
CviAII CATG 5 cut(s) 83, 443, 455, 468, 801
CviQI GTAC 4 cut(s) 43, 526, 815, 902
DdeI CTNAG 2 cut(s) 48, 383
DpnI GATC 4 cut(s) 80, 226, 424, 642
DpnII GATC 4 cut(s) 78, 224, 422, 640
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 397, 519, 963
EarI CTCTTC 3 cut(s) 397, 519, 963
Eco130I CCWWGG 3 cut(s) 307, 732, 767
Eco31I GGTCTC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 943
Eco57I CTGAAG 2 cut(s) 521, 835
Eco88I CYCGRG 1 cut(s) 494
EcoNI CCTNNNNNAGG 2 cut(s) 487, 731
EcoO109I RGGNCCY 1 cut(s) 128
EcoRI GAATTC 2 cut(s) 180, 551
EcoRII CCWGG 1 cut(s) 883
EcoT14I CCWWGG 3 cut(s) 307, 732, 767
ErhI CCWWGG 3 cut(s) 307, 732, 767
FaeI CATG 5 cut(s) 86, 446, 458, 471, 804
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 2 cut(s) 391, 956
FatI CATG 5 cut(s) 82, 442, 454, 467, 800
FblI GTMKAC 2 cut(s) 723, 918
Fnu4HI GCNGC 1 cut(s) 559
FokI GGATG 3 cut(s) 289, 517, 851
Fsp4HI GCNGC 1 cut(s) 559
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 559
GsaI CCCAGC 1 cut(s) 943
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 4 cut(s) 130, 493, 605, 883
HapII CCGG 2 cut(s) 495, 930
HhaI GCGC 1 cut(s) 344
Hin1II CATG 5 cut(s) 86, 446, 458, 471, 804
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HpaII CCGG 2 cut(s) 495, 930
Hpy166II GTNNAC 4 cut(s) 724, 798, 847, 919
Hpy188I TCNGA 8 cut(s) 30, 229, 241, 384, 430, 703, 792, 854
Hpy188III TCNNGA 8 cut(s) 92, 116, 191, 269, 325, 690, 955, 995
Hpy8I GTNNAC 4 cut(s) 724, 798, 847, 919
HpyAV CCTTC 7 cut(s) 146, 215, 270, 406, 545, 622, 630
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 5 cut(s) 302, 410, 442, 471, 776
HpyF3I CTNAG 2 cut(s) 48, 383
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 5 cut(s) 86, 446, 458, 471, 804
HspAI GCGC 1 cut(s) 342
KpnI GGTACC 2 cut(s) 46, 529
Kzo9I GATC 4 cut(s) 78, 224, 422, 640
LguI GCTCTTC 2 cut(s) 397, 519
LmnI GCTCC 3 cut(s) 339, 498, 932
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 3 cut(s) 154, 311, 377
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 2 cut(s) 473, 972
MalI GATC 4 cut(s) 80, 226, 424, 642
MbiI CCGCTC 1 cut(s) 244
MboI GATC 4 cut(s) 78, 224, 422, 640
MflI RGATCY 2 cut(s) 78, 224
MluCI AATT 6 cut(s) 180, 285, 551, 577, 588, 855
MlyI GAGTC 4 cut(s) 245, 373, 425, 707
MmeI TCCRAC 2 cut(s) 261, 565
MnlI CCTC 8 cut(s) 187, 190, 305, 493, 496, 595, 798, 799
MseI TTAA 6 cut(s) 54, 69, 288, 683, 747, 1009
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 558
MspI CCGG 2 cut(s) 495, 930
MspR9I CCNGG 4 cut(s) 495, 496, 885, 931
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 1 cut(s) 885
NciI CCSGG 3 cut(s) 495, 496, 931
NdeII GATC 4 cut(s) 78, 224, 422, 640
NlaIII CATG 5 cut(s) 86, 446, 458, 471, 804
NlaIV GGNNCC 4 cut(s) 44, 80, 527, 944
NmuCI GTSAC 1 cut(s) 473
PciSI GCTCTTC 2 cut(s) 397, 519
PctI GAATGC 1 cut(s) 964
PfeI GAWTC 8 cut(s) 19, 95, 122, 293, 353, 464, 571, 693
PfoI TCCNGGA 1 cut(s) 929
PkrI GCNGC 1 cut(s) 560
PleI GAGTC 4 cut(s) 244, 373, 425, 706
PpsI GAGTC 4 cut(s) 244, 373, 425, 706
Psp6I CCWGG 1 cut(s) 883
PspFI CCCAGC 1 cut(s) 939
PspGI CCWGG 1 cut(s) 883
PspN4I GGNNCC 4 cut(s) 44, 80, 527, 944
PspPI GGNCC 3 cut(s) 128, 492, 943
PsuI RGATCY 2 cut(s) 78, 224
RsaI GTAC 4 cut(s) 44, 527, 816, 903
RsaNI GTAC 4 cut(s) 43, 526, 815, 902
RseI CAYNNNNRTG 1 cut(s) 459
SapI GCTCTTC 2 cut(s) 397, 519
SaqAI TTAA 6 cut(s) 54, 69, 288, 683, 747, 1009
SatI GCNGC 1 cut(s) 559
Sau3AI GATC 4 cut(s) 78, 224, 422, 640
Sau96I GGNCC 3 cut(s) 128, 492, 943
SchI GAGTC 4 cut(s) 245, 373, 425, 707
ScrFI CCNGG 4 cut(s) 495, 496, 885, 931
SfaNI GCATC 3 cut(s) 154, 311, 377
SinI GGWCC 1 cut(s) 943
SmaI CCCGGG 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 2 cut(s) 275, 487
SmoI CTYRAG 2 cut(s) 275, 487
Sse9I AATT 6 cut(s) 180, 285, 551, 577, 588, 855
SsiI CCGC 2 cut(s) 244, 556
StyD4I CCNGG 4 cut(s) 493, 494, 883, 929
StyI CCWWGG 3 cut(s) 307, 732, 767
TaiI ACGT 1 cut(s) 601
TaqI TCGA 4 cut(s) 22, 689, 696, 909
TasI AATT 6 cut(s) 180, 285, 551, 577, 588, 855
TfiI GAWTC 8 cut(s) 19, 95, 122, 293, 353, 464, 571, 693
Tru1I TTAA 6 cut(s) 54, 69, 288, 683, 747, 1009
Tru9I TTAA 6 cut(s) 54, 69, 288, 683, 747, 1009
TscAI CASTG 3 cut(s) 478, 789, 875
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 7 cut(s) 17, 99, 173, 174, 456, 843, 981
TspGWI ACGGA 2 cut(s) 49, 91
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 3 cut(s) 478, 789, 875
VpaK11BI GGWCC 1 cut(s) 943
XagI CCTNNNNNAGG 2 cut(s) 487, 731
XapI RAATTY 4 cut(s) 180, 551, 577, 588
XmaI CCCGGG 1 cut(s) 494
XmiI GTMKAC 2 cut(s) 723, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.