Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003120

Physical Location & Seq

Genomic Coordinates Forward (+)

6759098 .. 6760794

Gene Structure 1697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAATGATGAATTGGGAGCGGAGGAGTTTGCTAAACGAGCTAATTCATGGACTAAAAGCGGCCAAGCAGCTTCAGGGTTCGTCTTCTCCATCGTTGTCAGCTTCTTCTTCATATTTGACGACGGAGATAAAGGAGAATCTCTTACATAACATAGTTTCTTCCTTCAAAAAAGCTATTTTGATGCTCAACGGATCCACCACACAACACAATCCAACGATAGAGCTTGCGCCTGATCCCCTAGCTCATCCCGGAAAGGTTCCAGGATCTCCAGCATCGATCACCGGAAATCCGAGAAGCGAAGAGTTTTTCAATGTAAGATCGAAAGAATTCAACTTAAGTTCTAAAAAGAGGAAGATGTTGCCAAAGTGGACAGAGCAAGTGAGAATTAGCCCAGAGAGAGGCTTAGAAGGACCTCATGACGATATCTTCAGCTGGAGAAAATATGGCCAGAAAGACATTTTGGGCGCCAAATTCCCAAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACTGTTGGGCTACGAAACAAGTCCAAAGATCGGACGGTGATCCAACGATCTTCGAAGTAACATACAGAGGAACACACACTTGTTCACAGGGGATCCCACTTCCAGAGAAACGAGAAACCAAACCAAAACACACAGTAGCAGTAAATTACCAGAATCTCAGGGCCAGTCTTACCGTACGTACCGGCGGACTTGGAAGCGAAGCTTTCTCATTCCCCGTCACGTCGCCGTTATACACTTACGAGTCCATCAACGGTGGTGGAACGTTTTACCACCACGTGGGAAGTTCTGGTCCGTCGGATTTCACTGGATTGATCTCAACAAATACTTCCACAGGAAGTTCTCCAATCTTCGACGTTAATTTTCAATTTGATCCAACGGCTGAGATTAACACAGGCTTCCCCACTTTTTTCCACAATTCGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

313

Amino Acids

34.89

Weight (kDa)

9.23

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	141 - 200	1.7e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11070 AT4G11070 AT4G23810
fragaria_vesca	FvH4_5g04370 FvH4_7g31050
malus_domestica	MD01G1215300.v1.1 MD06G1104100.v1.1 MD07G1285200.v1.1 MD07G1285400.v1.1 MD14G1123000.v1.1
prunus_persica	Prupe.2G307400_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1
pyrus_communis	pycom01g22600 pycom06g09890 pycom07g25900
rosa_chinensis	RchiOBHm_Chr1g0380121 RchiOBHm_Chr7g0195191
rosa_laevigata	RLG00000004139 RLG00000026329
rosa_multiflora	Rmu_sc0001232.1_g000014 Rmu_sc0002381.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260680 Rroxscaffold_4G00279660
rosa_rugosa	Rorug01G0417600 Rorug07G0021500
rosa_samantha	Rh1AG442800 Rh1BG397700 Rh1CG411200 Rh1DG428500 Rh7AG148800 Rh7BG150100 Rh7CG153600 Rh7DG150000
rosa_wichuraiana	Rw1G038450 Rw7G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	3 cut(s)	22, 62, 702
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	8 cut(s)	189, 202, 230, 274, 551, 604, 617, 881
AcoI	YGGCCR	2 cut(s)	63, 448
AcsI	RAATTY	2 cut(s)	329, 473
AcuI	CTGAAG	2 cut(s)	59, 415
AcvI	CACGTG	1 cut(s)	793
AcyI	GRCGYC	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	793
AfaI	GTAC	3 cut(s)	518, 693, 697
AfiI	CCNNNNNNNGG	3 cut(s)	401, 547, 793
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	169, 313, 334, 881
AjiI	CACGTC	1 cut(s)	738
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	8 cut(s)	43, 73, 104, 176, 226, 245, 435, 719
AluI	AGCT	8 cut(s)	43, 73, 104, 176, 226, 245, 435, 719
AlwI	GGATC	8 cut(s)	189, 202, 230, 274, 551, 604, 617, 881
AoxI	GGCC	3 cut(s)	63, 448, 678
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	329, 473
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	232, 470
AspS9I	GGNCC	3 cut(s)	413, 678, 806
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	274, 566
AsuII	TTCGAA	1 cut(s)	570
AvaII	GGWCC	2 cut(s)	413, 806
BalI	TGGCCA	1 cut(s)	450
BamHI	GGATCC	2 cut(s)	194, 609
BanI	GGYRCC	1 cut(s)	467
BbrPI	CACGTG	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	2 cut(s)	100, 770
BceAI	ACGGC	2 cut(s)	727, 909
BciT130I	CCWGG	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	252
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	63, 71
BlsI	GCNGC	2 cut(s)	64, 72
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	2 cut(s)	252, 264
Bme18I	GGWCC	2 cut(s)	413, 806
BmgBI	CACGTC	1 cut(s)	738
BmgT120I	GGNCC	3 cut(s)	413, 678, 806
BmiI	GGNNCC	4 cut(s)	196, 261, 469, 611
BmrFI	CCNGG	2 cut(s)	252, 264
BmsI	GCATC	3 cut(s)	174, 284, 485
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	255, 457
Bpu14I	TTCGAA	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	278
BsaAI	YACGTR	2 cut(s)	695, 793
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 547, 793
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	681, 826
BseBI	CCWGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	401, 547, 793
BseMII	CTCAG	2 cut(s)	688, 888
BseNI	ACTGG	2 cut(s)	681, 826
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	3 cut(s)	65, 450, 680
BshNI	GGYRCC	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	252, 285, 699
BsiWI	CGTACG	1 cut(s)	691
BslI	CCNNNNNNNGG	3 cut(s)	401, 547, 793
BsnI	GGCC	3 cut(s)	65, 450, 680
Bsp119I	TTCGAA	1 cut(s)	570
BspACI	CCGC	3 cut(s)	22, 62, 702
BspANI	GGCC	3 cut(s)	65, 450, 680
BspCNI	CTCAG	2 cut(s)	687, 889
BspDI	ATCGAT	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	196, 261, 469, 611
BspPI	GGATC	8 cut(s)	189, 202, 230, 274, 551, 604, 617, 881
BspT104I	TTCGAA	1 cut(s)	570
BspT107I	GGYRCC	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	681, 826
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	479
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	6 cut(s)	516, 521, 554, 652, 691, 770
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	468
BstAFI	CTTAAG	1 cut(s)	337
BstBAI	YACGTR	2 cut(s)	695, 793
BstBI	TTCGAA	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	406, 674, 897
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	232, 470
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	250, 262
BstSNI	TACGTA	1 cut(s)	695
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	3 cut(s)	194, 266, 609
BstYI	RGATCY	3 cut(s)	194, 266, 609
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	3 cut(s)	65, 450, 680
BsuTUI	ATCGAT	1 cut(s)	278
BtrI	CACGTC	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	232, 470
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	413, 678, 806
ClaI	ATCGAT	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	517, 692, 696
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	2 cut(s)	50, 419
CviQI	GTAC	3 cut(s)	517, 692, 696
DdeI	CTNAG	3 cut(s)	406, 674, 897
DinI	GGCGCC	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	793
EaeI	YGGCCR	2 cut(s)	63, 448
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	2 cut(s)	413, 806
Eco57I	CTGAAG	2 cut(s)	59, 415
Eco72I	CACGTG	1 cut(s)	793
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	2 cut(s)	53, 422
FaiI	YATR	8 cut(s)	51, 115, 150, 155, 420, 447, 580, 748
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FatI	CATG	2 cut(s)	49, 418
Fnu4HI	GCNGC	2 cut(s)	63, 71
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	63, 71
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	2 cut(s)	231, 469
GluI	GCNGC	2 cut(s)	63, 71
GsuI	CTGGAG	2 cut(s)	255, 457
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	65, 450, 680
HapII	CCGG	3 cut(s)	252, 285, 699
HhaI	GCGC	2 cut(s)	232, 470
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	2 cut(s)	53, 422
Hin6I	GCGC	2 cut(s)	230, 468
HinP1I	GCGC	2 cut(s)	230, 468
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	3 cut(s)	139, 670, 758
HpaII	CCGG	3 cut(s)	252, 285, 699
HphI	GGTGA	2 cut(s)	274, 566
Hpy166II	GTNNAC	2 cut(s)	372, 602
Hpy188I	TCNGA	3 cut(s)	294, 550, 814
Hpy188III	TCNNGA	2 cut(s)	419, 620
Hpy8I	GTNNAC	2 cut(s)	372, 602
Hpy99I	CGWCG	4 cut(s)	127, 742, 814, 872
HpyAV	CCTTC	2 cut(s)	175, 404
HpyCH4III	ACNGT	6 cut(s)	516, 521, 554, 652, 691, 770
HpyCH4IV	ACGT	5 cut(s)	694, 737, 779, 792, 870
HpyCH4V	TGCA	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	3 cut(s)	406, 674, 897
HpySE526I	ACGT	5 cut(s)	694, 737, 779, 792, 870
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	2 cut(s)	53, 422
HspAI	GCGC	2 cut(s)	230, 468
KasI	GGCGCC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	3 cut(s)	174, 284, 485
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	5 cut(s)	694, 737, 779, 792, 870
MaeIII	GTNAC	3 cut(s)	506, 574, 733
MbiI	CCGCTC	1 cut(s)	22
MboII	GAAGA	9 cut(s)	78, 99, 102, 153, 314, 367, 421, 559, 856
MflI	RGATCY	3 cut(s)	194, 266, 609
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	9 cut(s)	13, 45, 329, 387, 473, 661, 874, 881, 931
MluNI	TGGCCA	1 cut(s)	450
Mly113I	GGCGCC	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	4 cut(s)	239, 584, 792, 914
MnlI	CCTC	5 cut(s)	18, 345, 395, 426, 578
Mox20I	TGGCCA	1 cut(s)	450
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	4 cut(s)	338, 873, 903, 940
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	435
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	3 cut(s)	252, 285, 699
MspR9I	CCNGG	2 cut(s)	252, 264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	40
NarI	GGCGCC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	252
NlaIII	CATG	2 cut(s)	53, 422
NlaIV	GGNNCC	4 cut(s)	196, 261, 469, 611
NmuCI	GTSAC	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	570
PagI	TCATGA	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	139, 670
Pfl23II	CGTACG	1 cut(s)	691
PflMI	CCANNNNNTGG	1 cut(s)	793
PfoI	TCCNGGA	2 cut(s)	250, 262
PkrI	GCNGC	2 cut(s)	64, 72
PleI	GAGTC	1 cut(s)	766
PluTI	GGCGCC	1 cut(s)	471
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	766
Ppu21I	YACGTR	2 cut(s)	695, 793
PpuMI	RGGWCCY	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	262
PspLI	CGTACG	1 cut(s)	691
PspN4I	GGNNCC	4 cut(s)	196, 261, 469, 611
PspPI	GGNCC	3 cut(s)	413, 678, 806
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	3 cut(s)	194, 266, 609
PvuII	CAGCTG	1 cut(s)	435
RsaI	GTAC	3 cut(s)	518, 693, 697
RsaNI	GTAC	3 cut(s)	517, 692, 696
SaqAI	TTAA	4 cut(s)	338, 873, 903, 940
SatI	GCNGC	2 cut(s)	63, 71
Sau96I	GGNCC	3 cut(s)	413, 678, 806
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	2 cut(s)	252, 264
SfaNI	GCATC	3 cut(s)	174, 284, 485
SfoI	GGCGCC	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	570
SinI	GGWCC	2 cut(s)	413, 806
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SnaBI	TACGTA	1 cut(s)	695
Sse9I	AATT	9 cut(s)	13, 45, 329, 387, 473, 661, 874, 881, 931
SsiI	CCGC	3 cut(s)	22, 62, 702
SspDI	GGCGCC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	250, 262
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	6 cut(s)	516, 521, 554, 652, 691, 770
TaiI	ACGT	5 cut(s)	697, 740, 782, 795, 873
TaqI	TCGA	5 cut(s)	278, 323, 570, 867, 935
TasI	AATT	9 cut(s)	13, 45, 329, 387, 473, 661, 874, 881, 931
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	139, 670
Tru1I	TTAA	4 cut(s)	338, 873, 903, 940
Tru9I	TTAA	4 cut(s)	338, 873, 903, 940
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	3 cut(s)	26, 38, 102
TspGWI	ACGGA	3 cut(s)	140, 207, 798
TspRI	CASTG	1 cut(s)	826
Van91I	CCANNNNNTGG	1 cut(s)	793
Vha464I	CTTAAG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	413, 806
XapI	RAATTY	2 cut(s)	329, 473
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.