Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003120

Physical Location & Seq

Genomic Coordinates Reverse (-)

12392370 .. 12393982

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAGGAAGAGATATGTTAAGTTGGGAGCAAAAGACATTGCTAAGCGAGCTTATCAATGGATTTGATGCGGCCAAAAAGCTTCAGGCACGACTTAGAGAAGCTCCGTCGCCGTCGTCATCATTTTCATCACCGGCGACGGCTGTTGCTGAGACTAACGAGATTCTGGTGAAGCAGATAGTTTCTTCCTACGAGAGATCTCTTCTTCTGCTAAACTGGTCATCCTCACCGAGCGTACAACTTATTCCGACGCCGGTTACTGTAGTCCCGGTGGCAAATCCCGGCAGTGTTCCAGAATCTCCGGCATCGATAAACGGAAGTCCGAGAAGTGAAGAGTTTGCCGATGGAGGAGGTTCTAGCGAGAGTCATCATCGCCAAGATTACATTTTCAATTCAAAGAAAAGAAAGATGTTACCAAAGTGGTCAGAAAAAGTGAGAATAAGCCCAGAGAGAGGCTTAGAAGGACCTCAAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACATTTTAGGCGCCAAATTCCCAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACTGTTGGGCAACGAAACAAGTCCAGAGATCAGACGGGGATGCTACGGTTTTCGAAGTGACGTACAGAGGAACACACACTTGTTCGCAGGCGATCACAAGAACACCACCATTAGCCTCGCCGGAGAAGCGACAAGACACCAGAGTCAAACCAGCCATTACCCAAAAGCCAAAGGATATTCTCGAGAGTCTTAAATCCAACTTAACCGTTCGAACCGATGGGCTTGATGATGGTAAAGACGTTTTCTCGTTCCCTGATACGCCGCCGTTTTACAATTACGGAACTATCAACGGCGAGTTCGGCCACGTGGAGAGTTCTCCGATCTTCGACGTTGTTGACTGGTTCAATCCAACGGTCGAGATTGACACAACTTTCCCCGCGTTTTTACACGAGTCGATTTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

324

Amino Acids

36.27

Weight (kDa)

6.34

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	158 - 217	4.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11070 AT4G11070 AT4G23810
fragaria_vesca	FvH4_5g04370 FvH4_7g31050
malus_domestica	MD01G1215300.v1.1 MD06G1104100.v1.1 MD07G1285200.v1.1 MD07G1285400.v1.1 MD14G1123000.v1.1
prunus_persica	Prupe.2G307400_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1
pyrus_communis	pycom01g22600 pycom06g09890 pycom07g25900
rosa_chinensis	RchiOBHm_Chr1g0380121 RchiOBHm_Chr7g0195191
rosa_laevigata	RLG00000004139 RLG00000026329
rosa_multiflora	Rmu_sc0001232.1_g000014 Rmu_sc0002381.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260680 Rroxscaffold_4G00279660
rosa_rugosa	Rorug01G0417600 Rorug07G0021500
rosa_samantha	Rh1AG442800 Rh1BG397700 Rh1CG411200 Rh1DG428500 Rh7AG148800 Rh7BG150100 Rh7CG153600 Rh7DG150000
rosa_wichuraiana	Rw1G038450 Rw7G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	518
AccII	CGCG	1 cut(s)	947
AciI	CCGC	3 cut(s)	71, 830, 945
AcoI	YGGCCR	2 cut(s)	72, 868
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	874
AcyI	GRCGYC	2 cut(s)	251, 519
AfaI	GTAC	2 cut(s)	237, 632
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	391, 396, 913
AluBI	AGCT	4 cut(s)	52, 82, 104, 486
AluI	AGCT	4 cut(s)	52, 82, 104, 486
Alw26I	GTCTC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	2 cut(s)	72, 868
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	2 cut(s)	269, 282
AsuHPI	GGTGA	3 cut(s)	123, 181, 219
AsuII	TTCGAA	2 cut(s)	621, 778
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	518
BauI	CACGAG	1 cut(s)	956
BbrPI	CACGTG	1 cut(s)	874
BccI	CCATC	3 cut(s)	338, 779, 791
BceAI	ACGGC	4 cut(s)	97, 156, 817, 874
BcnI	CCSGG	2 cut(s)	269, 282
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	522
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	72, 830
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	2 cut(s)	73, 831
Bme1390I	CCNGG	2 cut(s)	269, 282
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	2 cut(s)	269, 282
BmsI	GCATC	4 cut(s)	58, 314, 536, 598
BpmI	CTGGAG	1 cut(s)	508
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	2 cut(s)	621, 778
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	2 cut(s)	269, 282
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	874
BsaHI	GRCGYC	2 cut(s)	251, 519
BsaJI	CCNNGG	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	2 cut(s)	133, 253
Bse1I	ACTGG	2 cut(s)	221, 911
Bse3DI	GCAATG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	221, 613
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	221, 911
BseRI	GAGGAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	947
Bsh1285I	CGRYCG	1 cut(s)	924
BshFI	GGCC	2 cut(s)	74, 870
BshNI	GGYRCC	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	924
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	6 cut(s)	134, 254, 269, 282, 302, 689
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	74, 870
BsoBI	CYCGRG	1 cut(s)	749
Bsp119I	TTCGAA	2 cut(s)	621, 778
Bsp143I	GATC	4 cut(s)	197, 596, 660, 888
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	3 cut(s)	71, 830, 945
BspANI	GGCC	2 cut(s)	74, 870
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	947
BspLI	GGNNCC	1 cut(s)	520
BspT104I	TTCGAA	2 cut(s)	621, 778
BspT107I	GGYRCC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	133, 253
BsrI	ACTGG	2 cut(s)	221, 911
BssAI	RCCGGY	2 cut(s)	133, 253
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	4 cut(s)	197, 596, 660, 888
BssNI	GRCGYC	2 cut(s)	251, 519
BssSI	CACGAG	1 cut(s)	956
BssT1I	CCWWGG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	956
Bst4CI	ACNGT	5 cut(s)	262, 572, 616, 775, 922
Bst6I	CTCTTC	3 cut(s)	4, 207, 327
BstACI	GRCGYC	2 cut(s)	251, 519
BstBAI	YACGTR	1 cut(s)	874
BstBI	TTCGAA	2 cut(s)	621, 778
BstC8I	GCNNGC	2 cut(s)	50, 657
BstDEI	CTNAG	4 cut(s)	44, 95, 150, 457
BstF5I	GGATG	2 cut(s)	221, 613
BstFNI	CGCG	1 cut(s)	947
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	4 cut(s)	200, 599, 663, 891
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	197, 596, 660, 888
BstMCI	CGRYCG	1 cut(s)	924
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 694, 867
BstSCI	CCNGG	2 cut(s)	267, 280
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	74, 870
BsuTUI	ATCGAT	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	221, 613
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	50, 657
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	2 cut(s)	133, 253
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	1 cut(s)	308
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	236, 631
CviQI	GTAC	2 cut(s)	236, 631
DdeI	CTNAG	4 cut(s)	44, 95, 150, 457
DinI	GGCGCC	1 cut(s)	520
DpnI	GATC	4 cut(s)	199, 598, 662, 890
DpnII	GATC	4 cut(s)	197, 596, 660, 888
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
EaeI	YGGCCR	2 cut(s)	72, 868
Eam1104I	CTCTTC	3 cut(s)	4, 207, 327
EarI	CTCTTC	3 cut(s)	4, 207, 327
Eco130I	CCWWGG	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	874
Eco88I	CYCGRG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	530
EgeI	GGCGCC	1 cut(s)	520
EheI	GGCGCC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	530
FaiI	YATR	2 cut(s)	17, 498
FaqI	GGGAC	1 cut(s)	251
FauI	CCCGC	1 cut(s)	952
Fnu4HI	GCNGC	2 cut(s)	72, 830
FokI	GGATG	2 cut(s)	208, 620
Fsp4HI	GCNGC	2 cut(s)	72, 830
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	2 cut(s)	72, 830
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	74, 870
HapII	CCGG	6 cut(s)	134, 254, 269, 282, 302, 689
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	521
Hin1I	GRCGYC	2 cut(s)	251, 519
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	6 cut(s)	163, 296, 364, 711, 754, 959
HpaII	CCGG	6 cut(s)	134, 254, 269, 282, 302, 689
HphI	GGTGA	3 cut(s)	123, 181, 219
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	5 cut(s)	249, 324, 427, 601, 888
Hpy188III	TCNNGA	6 cut(s)	293, 470, 592, 749, 751, 925
Hpy8I	GTNNAC	1 cut(s)	904
Hpy99I	CGWCG	5 cut(s)	112, 118, 142, 253, 899
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	5 cut(s)	262, 572, 616, 775, 922
HpyCH4IV	ACGT	4 cut(s)	629, 807, 873, 897
HpyCH4V	TGCA	1 cut(s)	549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 694, 867
HpyF3I	CTNAG	4 cut(s)	44, 95, 150, 457
HpySE526I	ACGT	4 cut(s)	629, 807, 873, 897
Hsp92I	GRCGYC	2 cut(s)	251, 519
HspAI	GCGC	1 cut(s)	519
KasI	GGCGCC	1 cut(s)	518
Kzo9I	GATC	4 cut(s)	197, 596, 660, 888
LmnI	GCTCC	2 cut(s)	28, 109
LweI	GCATC	4 cut(s)	58, 314, 536, 598
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	4 cut(s)	629, 807, 873, 897
MaeIII	GTNAC	3 cut(s)	256, 411, 625
MalI	GATC	4 cut(s)	199, 598, 662, 890
MboI	GATC	4 cut(s)	197, 596, 660, 888
MboII	GAAGA	6 cut(s)	21, 177, 194, 197, 344, 883
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	3 cut(s)	391, 524, 841
Mly113I	GGCGCC	1 cut(s)	519
MlyI	GAGTC	4 cut(s)	373, 720, 763, 968
MmeI	TCCRAC	3 cut(s)	272, 789, 941
MnlI	CCTC	7 cut(s)	235, 341, 344, 446, 477, 629, 694
MseI	TTAA	4 cut(s)	20, 759, 770, 973
MspI	CCGG	6 cut(s)	134, 254, 269, 282, 302, 689
MspR9I	CCNGG	2 cut(s)	269, 282
MvnI	CGCG	1 cut(s)	947
MwoI	GCNNNNNNNGC	3 cut(s)	49, 694, 867
NarI	GGCGCC	1 cut(s)	519
NciI	CCSGG	2 cut(s)	269, 282
NdeII	GATC	4 cut(s)	197, 596, 660, 888
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	625
NspV	TTCGAA	2 cut(s)	621, 778
PaeR7I	CTCGAG	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	163, 296
PkrI	GCNGC	2 cut(s)	73, 831
PleI	GAGTC	4 cut(s)	372, 719, 762, 967
PluTI	GGCGCC	1 cut(s)	522
PmaCI	CACGTG	1 cut(s)	874
PmlI	CACGTG	1 cut(s)	874
PpsI	GAGTC	4 cut(s)	372, 719, 762, 967
Ppu21I	YACGTR	1 cut(s)	874
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
PspCI	CACGTG	1 cut(s)	874
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	1 cut(s)	464
PspPPI	RGGWCCY	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	2 cut(s)	237, 632
RsaNI	GTAC	2 cut(s)	236, 631
SaqAI	TTAA	4 cut(s)	20, 759, 770, 973
SatI	GCNGC	2 cut(s)	72, 830
Sau3AI	GATC	4 cut(s)	197, 596, 660, 888
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	4 cut(s)	373, 720, 763, 968
ScrFI	CCNGG	2 cut(s)	269, 282
SfaNI	GCATC	4 cut(s)	58, 314, 536, 598
SfcI	CTRYAG	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	520
Sfr274I	CTCGAG	1 cut(s)	749
SfuI	TTCGAA	2 cut(s)	621, 778
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	464
SlaI	CTCGAG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	468, 749
SmoI	CTYRAG	2 cut(s)	468, 749
Sse9I	AATT	3 cut(s)	391, 524, 841
SsiI	CCGC	3 cut(s)	71, 830, 945
SspDI	GGCGCC	1 cut(s)	518
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	267, 280
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	5 cut(s)	262, 572, 616, 775, 922
TaiI	ACGT	4 cut(s)	632, 810, 876, 900
TaqI	TCGA	7 cut(s)	308, 621, 750, 778, 894, 924, 962
TasI	AATT	3 cut(s)	391, 524, 841
TauI	GCSGC	2 cut(s)	74, 832
TfiI	GAWTC	2 cut(s)	163, 296
Tru1I	TTAA	4 cut(s)	20, 759, 770, 973
Tru9I	TTAA	4 cut(s)	20, 759, 770, 973
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	625
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	3 cut(s)	96, 330, 861
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	749
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.