Rh1AG442800
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
66394877 .. 66396212
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG442800.1

Sequence Viewer

Length: 1113 bp
ATGGACATGGGAGTGAATTGGGAGCAAAAGAGTGGTATTGTAAATGAGTTAACACGTGGCAGGGAGCTTGCTAGGCAGCTCCAGATCCATCTCAATGCTACATCAACTTTGAATCCTTCCACGAGCTCTCAAACAGCGTTAACTCGCGAGATGCTGATCCAAAAGATCATATCTTCCTACGAAAAGGCGCTTTCGATGCTCAATTCTAGCAGCTCAGCCCCAATGGCAGTAGCAGTAGAGAAACTACACCAACAACAACCTACATTTACAGTAGCTGCTTCCACAGGTGTTGTTACGATTCGAATGGCTGACTCCCCACCTTCGCTAAATGGGAGTCCTCGGAGTGAAGACTCCGATGACCACAAAGATCCCTCTAGAAAAAGGAAAGGTCTGGCAAGGTGGACAAAACAAGTAAGAGTAACATCAGGTATGGGGCTTGAAGGGCCTCTTGATGATGGCTTTAGCTGGAGGAAGTATGGCCAAAAGGACATCCTCGGAGCCAAATATCCGAGAGGGTATTACAGATGCACTCATCGAAATGTTCAAGGTTGTTTGGCCACAAAACAAGTGCAACGCTCCGATGAGGACCCAATGATCCTCGAAATTACTTACCGAGGAAGGCACACTTGTACTCAAGCAGCCTCCACCTCCGTAGCTAGTCCTCCTCCAAAACCAATGTCACCATTGCCTGATCAAACACCAGAACCACCACAGATGAATCAGCAGCCTCAACATAATATGCTCTTAAGCCTCCCTGAAGGCCTCAGGGTCATAACTGAAGGCCTAGACACTAGTCATGATCGTCGTGGCGAATTATTATTTCCCTCATTCAACAACAACAACAACAATTATGTGGGGAACTTTTCTCCTTCATTAACTATGCCTACTGCTTCAACTTCTGGGACAAACTATTTCTCTGTACTGTCTCAGCAGGACTTTGGTGGTAAACAAAATCTGCAGATCAGCGCTGCGGCCGAGTCTCATGATATAATCTCAGCTGCTACTTCAGCTTCCAACTCTCCGACTGTTGGTTTGGATTTTCCATTTGCTGAAGCTGATCATCAGATATTATACCCCAACTTCACTTTTGATGATCCTGGATTTTTTCCCTAA

Protein Analysis

370

Amino Acids

40.65

Weight (kDa)

6.51

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 151 - 210 5.4e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 1 cut(s) 971
AclWI GGATC 5 cut(s) 79, 151, 362, 589, 1088
AcoI YGGCCR 3 cut(s) 478, 555, 972
AcuI CTGAAG 4 cut(s) 777, 798, 990, 1071
AcvI CACGTG 1 cut(s) 56
AfaI GTAC 2 cut(s) 631, 921
AfeI AGCGCT 1 cut(s) 967
AfiI CCNNNNNNNGG 1 cut(s) 1028
AflII CTTAAG 1 cut(s) 745
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 5 cut(s) 112, 440, 545, 832, 894
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 1 cut(s) 1096
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 930, 984
AlwI GGATC 5 cut(s) 79, 151, 362, 589, 1088
AlwNI CAGNNNCTG 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 967
AoxI GGCC 6 cut(s) 443, 478, 555, 760, 781, 972
ApeKI GCWGC 7 cut(s) 76, 210, 275, 638, 724, 968, 998
ArsI GACNNNNNNTTYG 4 cut(s) 662, 694, 1015, 1047
AspLEI GCGC 2 cut(s) 190, 968
AspS9I GGNCC 2 cut(s) 443, 586
AsuHPI GGTGA 1 cut(s) 672
AsuII TTCGAA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 586
AxyI CCTNAGG 1 cut(s) 764
BalI TGGCCA 2 cut(s) 480, 557
BanII GRGCYC 1 cut(s) 128
BauI CACGAG 1 cut(s) 121
BbrPI CACGTG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 7 cut(s) 88, 222, 262, 650, 736, 955, 985
BccI CCATC 2 cut(s) 96, 449
BciT130I CCWGG 1 cut(s) 1098
BclI TGATCA 2 cut(s) 691, 1057
BcoDI GTCTC 2 cut(s) 930, 984
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 6 cut(s) 72, 207, 375, 657, 785, 792
BfmI CTRYAG 1 cut(s) 956
BfoI RGCGCY 2 cut(s) 191, 969
BfrI CTTAAG 1 cut(s) 745
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 8 cut(s) 77, 211, 276, 639, 725, 969, 972, 999
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 8 cut(s) 78, 212, 277, 640, 726, 970, 973, 1000
Bme1390I CCNGG 1 cut(s) 1098
Bme18I GGWCC 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 443, 586
BmiI GGNNCC 2 cut(s) 499, 588
BmrFI CCNGG 1 cut(s) 1098
BmsI GCATC 3 cut(s) 141, 186, 515
BoxI GACNNNNGTC 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 2 cut(s) 65, 487
Bpu1102I GCTNAGC 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 338, 493, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 1028
Bse21I CCTNAGG 1 cut(s) 764
Bse3DI GCAATG 1 cut(s) 683
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 1098
BseDI CCNNGG 3 cut(s) 338, 493, 613
BseGI GGATG 1 cut(s) 489
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 1028
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 4 cut(s) 228, 778, 941, 1008
BseRI GAGGAG 1 cut(s) 654
BseX3I CGGCCG 1 cut(s) 972
BseXI GCAGC 7 cut(s) 88, 222, 262, 650, 736, 955, 985
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 975
BshFI GGCC 6 cut(s) 445, 480, 557, 762, 783, 974
BsiEI CGRYCG 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 128
BslFI GGGAC 1 cut(s) 916
BslI CCNNNNNNNGG 1 cut(s) 1028
BsmAI GTCTC 2 cut(s) 930, 984
BsmFI GGGAC 1 cut(s) 916
BsnI GGCC 6 cut(s) 445, 480, 557, 762, 783, 974
Bsp119I TTCGAA 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 128
Bsp1720I GCTNAGC 1 cut(s) 214
Bsp68I TCGCGA 1 cut(s) 147
BspACI CCGC 1 cut(s) 971
BspANI GGCC 6 cut(s) 445, 480, 557, 762, 783, 974
BspCNI CTCAG 4 cut(s) 227, 777, 940, 1007
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 2 cut(s) 796, 982
BspLI GGNNCC 2 cut(s) 499, 588
BspMAI CTGCAG 1 cut(s) 960
BspPI GGATC 5 cut(s) 79, 151, 362, 589, 1088
BspT104I TTCGAA 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 683
BssECI CCNNGG 3 cut(s) 338, 493, 613
BssSI CACGAG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 1098
Bst4CI ACNGT 3 cut(s) 271, 924, 1027
BstAFI CTTAAG 1 cut(s) 745
BstBAI YACGTR 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 214, 764, 927, 994
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 2 cut(s) 191, 969
BstHHI GCGC 2 cut(s) 190, 968
BstMAI GTCTC 2 cut(s) 930, 984
BstMCI CGRYCG 1 cut(s) 975
BstMWI GCNNNNNNNGC 5 cut(s) 73, 196, 224, 442, 1007
BstNI CCWGG 1 cut(s) 1098
BstPAI GACNNNNGTC 1 cut(s) 792
BstSCI CCNGG 1 cut(s) 1096
BstSFI CTRYAG 1 cut(s) 956
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 7 cut(s) 88, 222, 262, 650, 736, 955, 985
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 84, 367
BstYI RGATCY 2 cut(s) 84, 367
BstZI CGGCCG 1 cut(s) 972
Bsu36I CCTNAGG 1 cut(s) 764
BsuRI GGCC 6 cut(s) 445, 480, 557, 762, 783, 974
BtsCI GGATG 1 cut(s) 489
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 2 cut(s) 796, 982
CfoI GCGC 2 cut(s) 190, 968
Cfr13I GGNCC 2 cut(s) 443, 586
Csp6I GTAC 2 cut(s) 630, 920
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 3 cut(s) 7, 797, 983
CviQI GTAC 2 cut(s) 630, 920
DdeI CTNAG 4 cut(s) 214, 764, 927, 994
EaeI YGGCCR 3 cut(s) 478, 555, 972
EagI CGGCCG 1 cut(s) 972
Ecl136II GAGCTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 972
Eco147I AGGCCT 2 cut(s) 762, 783
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 586
Eco47III AGCGCT 1 cut(s) 967
Eco52I CGGCCG 1 cut(s) 972
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 4 cut(s) 777, 798, 990, 1071
Eco72I CACGTG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 764
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 443, 586
EcoRII CCWGG 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 3 cut(s) 10, 800, 986
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 610, 642
FaqI GGGAC 1 cut(s) 916
FatI CATG 3 cut(s) 6, 796, 982
FbaI TGATCA 2 cut(s) 691, 1057
Fnu4HI GCNGC 8 cut(s) 77, 211, 276, 639, 725, 969, 972, 999
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 8 cut(s) 77, 211, 276, 639, 725, 969, 972, 999
FspBI CTAG 6 cut(s) 72, 207, 375, 657, 785, 792
GlaI GCGC 2 cut(s) 189, 967
GluI GCNGC 8 cut(s) 77, 211, 276, 639, 725, 969, 972, 999
GsuI CTGGAG 2 cut(s) 65, 487
HaeII RGCGCY 2 cut(s) 191, 969
HaeIII GGCC 6 cut(s) 445, 480, 557, 762, 783, 974
HhaI GCGC 2 cut(s) 190, 968
Hin1II CATG 3 cut(s) 10, 800, 986
Hin6I GCGC 2 cut(s) 188, 966
HinP1I GCGC 2 cut(s) 188, 966
HincII GTYRAC 2 cut(s) 51, 141
HindII GTYRAC 2 cut(s) 51, 141
HinfI GANTC 7 cut(s) 112, 298, 311, 334, 350, 718, 977
HpaI GTTAAC 2 cut(s) 51, 141
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 4 cut(s) 51, 141, 402, 947
Hpy188I TCNGA 7 cut(s) 342, 355, 497, 510, 580, 1023, 1065
Hpy188III TCNNGA 6 cut(s) 82, 146, 375, 449, 797, 983
Hpy8I GTNNAC 4 cut(s) 51, 141, 402, 947
Hpy99I CGWCG 1 cut(s) 807
HpyAV CCTTC 7 cut(s) 126, 330, 434, 612, 752, 773, 879
HpyCH4III ACNGT 3 cut(s) 271, 924, 1027
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 528, 571, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 196, 224, 442, 1007
HpyF3I CTNAG 4 cut(s) 214, 764, 927, 994
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 3 cut(s) 10, 800, 986
HspAI GCGC 2 cut(s) 188, 966
Ksp22I TGATCA 2 cut(s) 691, 1057
KspAI GTTAAC 2 cut(s) 51, 141
LmnI GCTCC 5 cut(s) 22, 64, 84, 497, 581
Lsp1109I GCAGC 7 cut(s) 88, 222, 262, 650, 736, 955, 985
LweI GCATC 3 cut(s) 141, 186, 515
MaeI CTAG 6 cut(s) 72, 207, 375, 657, 785, 792
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 292, 418, 678
MboII GAAGA 2 cut(s) 165, 359
MflI RGATCY 2 cut(s) 84, 367
MhlI GDGCHC 1 cut(s) 128
MlsI TGGCCA 2 cut(s) 480, 557
MluCI AATT 5 cut(s) 16, 202, 603, 812, 847
MluNI TGGCCA 2 cut(s) 480, 557
MlyI GAGTC 4 cut(s) 305, 343, 344, 986
MmeI TCCRAC 2 cut(s) 1038, 1046
Mox20I TGGCCA 2 cut(s) 480, 557
MscI TGGCCA 2 cut(s) 480, 557
MseI TTAA 4 cut(s) 50, 140, 746, 875
MslI CAYNNNNRTG 3 cut(s) 11, 93, 537
Msp20I TGGCCA 2 cut(s) 480, 557
MspA1I CMGCKG 1 cut(s) 998
MspCI CTTAAG 1 cut(s) 745
MspR9I CCNGG 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 1098
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 73, 196, 224, 442, 1007
NlaIII CATG 3 cut(s) 10, 800, 986
NlaIV GGNNCC 2 cut(s) 499, 588
NmeAIII GCCGAG 1 cut(s) 1000
NmuCI GTSAC 1 cut(s) 678
NruI TCGCGA 1 cut(s) 147
NspV TTCGAA 1 cut(s) 301
PagI TCATGA 2 cut(s) 796, 982
PceI AGGCCT 2 cut(s) 762, 783
PfeI GAWTC 3 cut(s) 112, 298, 718
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 8 cut(s) 78, 212, 277, 640, 726, 970, 973, 1000
PleI GAGTC 4 cut(s) 305, 342, 344, 985
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 4 cut(s) 305, 342, 344, 985
Ppu21I YACGTR 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 586
PshAI GACNNNNGTC 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 1096
PspCI CACGTG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 1096
PspN4I GGNNCC 2 cut(s) 499, 588
PspPI GGNCC 2 cut(s) 443, 586
PspPPI RGGWCCY 1 cut(s) 586
PstI CTGCAG 1 cut(s) 960
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 84, 367
PvuII CAGCTG 1 cut(s) 998
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 2 cut(s) 631, 921
RsaNI GTAC 2 cut(s) 630, 920
RseI CAYNNNNRTG 3 cut(s) 11, 93, 537
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 4 cut(s) 50, 140, 746, 875
SatI GCNGC 8 cut(s) 77, 211, 276, 639, 725, 969, 972, 999
Sau96I GGNCC 2 cut(s) 443, 586
SchI GAGTC 4 cut(s) 305, 343, 344, 986
ScrFI CCNGG 1 cut(s) 1098
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 3 cut(s) 141, 186, 515
SfcI CTRYAG 1 cut(s) 956
SfuI TTCGAA 1 cut(s) 301
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 3 cut(s) 11, 93, 537
SmlI CTYRAG 2 cut(s) 633, 745
SmoI CTYRAG 2 cut(s) 633, 745
SpeI ACTAGT 1 cut(s) 791
Sse9I AATT 5 cut(s) 16, 202, 603, 812, 847
SseBI AGGCCT 2 cut(s) 762, 783
SsiI CCGC 1 cut(s) 971
SspMI CTAG 6 cut(s) 72, 207, 375, 657, 785, 792
SstI GAGCTC 1 cut(s) 128
StuI AGGCCT 2 cut(s) 762, 783
StyD4I CCNGG 1 cut(s) 1096
TaaI ACNGT 3 cut(s) 271, 924, 1027
TaiI ACGT 1 cut(s) 58
TaqI TCGA 4 cut(s) 194, 301, 535, 600
TasI AATT 5 cut(s) 16, 202, 603, 812, 847
TatI WGTACW 2 cut(s) 629, 919
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 3 cut(s) 112, 298, 718
Tru1I TTAA 4 cut(s) 50, 140, 746, 875
Tru9I TTAA 4 cut(s) 50, 140, 746, 875
TseFI GTSAC 1 cut(s) 678
TseI GCWGC 7 cut(s) 76, 210, 275, 638, 724, 968, 998
Tsp45I GTSAC 1 cut(s) 678
TspDTI ATGAA 2 cut(s) 731, 861
TspGWI ACGGA 1 cut(s) 640
Vha464I CTTAAG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 374
XspI CTAG 6 cut(s) 72, 207, 375, 657, 785, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.