MD01G1215300.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
30851473 .. 30853003
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1215300.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGGAGAACTGCAATATACATTGGGAGCAAAAGAGTCTTGTAAATGAGCTAGCACAAGGGAGGGATCTGGCTAGGCAGCTACAGATCCATCTCAACGTTCCATCTTCCTCTTATGGAACCCGGGAATTGCTGGTTCAAAAGATCATACTTTCGTACGAAAAAGCGCTTTCCATGCTGAACTCTAGCAGCTCAGCCTCAGGAGGTGAGCAACAACAGCCCACAGGTCATGTTGCAATTCGAATGGTTGAGTCTCCGCCGCATTCGCTAAATGAAAGTCCCCGGAGTGAAGACTCCGACCGCGAATTCAAGGACCATGACAACAAAGATTCCTCTAGGAAGAGGAAAAATCTCCCACGGTGGACACAACAAATAAGAGTTACATCTGGTATGGGGCTTGAGGGGCCTCTTGATGATGGATTTAGTTGGAGGAAGTACGGCCAGAAGGACATACTTGGAGCCAAATATCCAAGAGGCTACTACCGCTGCACTCACCGAAACGTCCAAAGCTGCTTGGCCACAAAGCAAGTCCAACGTTCCGATGAAGACCCGACGATCTTTGAAATTACTTACAGAGGAAAGCACACATGTACACAAGCCTCCACCGGCACAAGTACTCCTCCTTCCCCGTCACCGTTGCAGCCCGAAAGGACGGAACGGCAGAATAACCTAGTGGATCCTCAACAAAACCAGCAACAATCACAACAACACACGCTCTTAAACCTCCCGGAAGGCCTCAGAGTCATTACTGAAGGATTAGACACTCGTGAGGAACTGTTCCCCTCCTTCAACAGTCCCTCACCATTGAACAACAGTTATGTGGGAAGTTTTTCTTCTCCATTTGCGGGACCTACAACTTCAGGAACAAACTATTTCTCAATGTCTCAGCGGGATTTTGGAGTTGACCAAAATTTTCAGAGTGGAGAGATAATCTCAGCTCCAACTTCAGCTACCAACTCTCCAAGTGTTGGTTTAGATATCCCATTTGGTCAGGCTGATCAGTTGTTTCCCAACTTCTCATTTGACGGTCCAGGATTCTTTTCCTAA

Protein Analysis

348

Amino Acids

38.71

Weight (kDa)

5.93

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 137 - 196 3.6e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 965
AccII CGCG 1 cut(s) 300
AciI CCGC 6 cut(s) 254, 257, 298, 481, 842, 886
AclI AACGTT 2 cut(s) 96, 532
AclWI GGATC 4 cut(s) 72, 79, 668, 681
AcoI YGGCCR 2 cut(s) 436, 513
AcsI RAATTY 2 cut(s) 302, 907
AcuI CTGAAG 3 cut(s) 768, 840, 927
AfaI GTAC 4 cut(s) 155, 434, 589, 613
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 842, 965
AflIII ACRYGT 1 cut(s) 584
AgsI TTSAA 5 cut(s) 137, 307, 560, 787, 805
AjnI CCWGG 1 cut(s) 1027
AluBI AGCT 6 cut(s) 49, 79, 189, 507, 935, 947
AluI AGCT 6 cut(s) 49, 79, 189, 507, 935, 947
Alw26I GTCTC 2 cut(s) 255, 885
AlwI GGATC 4 cut(s) 72, 79, 668, 681
Ama87I CYCGRG 1 cut(s) 120
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 4 cut(s) 401, 436, 513, 730
ApeKI GCWGC 5 cut(s) 76, 186, 483, 507, 637
ApoI RAATTY 2 cut(s) 302, 907
Asp700I GAANNNNTTC 1 cut(s) 826
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 4 cut(s) 310, 401, 845, 1025
AsuC2I CCSGG 4 cut(s) 121, 122, 280, 725
AsuHPI GGTGA 4 cut(s) 215, 482, 621, 789
AsuII TTCGAA 1 cut(s) 238
AsuNHI GCTAGC 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 3 cut(s) 310, 845, 1025
AxyI CCTNAGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 515
BamHI GGATCC 1 cut(s) 673
BarI GAAGNNNNNNTAC 2 cut(s) 604, 636
BauI CACGAG 1 cut(s) 762
BbsI GAAGAC 2 cut(s) 294, 549
BbvI GCAGC 5 cut(s) 88, 198, 470, 494, 649
BccI CCATC 3 cut(s) 96, 109, 407
BceAI ACGGC 2 cut(s) 451, 671
BciT130I CCWGG 1 cut(s) 1029
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 4 cut(s) 121, 122, 280, 725
BcoDI GTCTC 2 cut(s) 255, 885
BfaI CTAG 5 cut(s) 50, 72, 183, 333, 668
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 6 cut(s) 77, 187, 257, 484, 508, 638
BlpI GCTNAGC 1 cut(s) 190
BlsI GCNGC 6 cut(s) 78, 188, 258, 485, 509, 639
BmcAI AGTACT 1 cut(s) 613
Bme1390I CCNGG 5 cut(s) 121, 122, 280, 725, 1029
Bme18I GGWCC 3 cut(s) 310, 845, 1025
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 4 cut(s) 310, 401, 845, 1025
BmiI GGNNCC 5 cut(s) 118, 402, 457, 675, 846
BmrFI CCNGG 5 cut(s) 121, 122, 280, 725, 1029
BmtI GCTAGC 1 cut(s) 53
BpiI GAAGAC 2 cut(s) 294, 549
BplI GAGNNNNNCTC 2 cut(s) 914, 946
Bpu1102I GCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 4 cut(s) 121, 122, 280, 725
BsaJI CCNNGG 3 cut(s) 120, 278, 353
BsaXI ACNNNNNCTCC 4 cut(s) 598, 628, 940, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 842, 965
Bse118I RCCGGY 1 cut(s) 602
Bse21I CCTNAGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 3 cut(s) 120, 278, 353
BseLI CCNNNNNNNGG 2 cut(s) 842, 965
BseMII CTCAG 5 cut(s) 204, 210, 748, 896, 945
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 5 cut(s) 88, 198, 470, 494, 649
BsgI GTGCAG 1 cut(s) 469
Bsh1236I CGCG 1 cut(s) 300
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 403, 438, 515, 732
BsiEI CGRYCG 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 4 cut(s) 121, 280, 603, 725
BsiWI CGTACG 1 cut(s) 153
BslFI GGGAC 3 cut(s) 261, 777, 858
BslI CCNNNNNNNGG 2 cut(s) 842, 965
BsmAI GTCTC 2 cut(s) 255, 885
BsmFI GGGAC 3 cut(s) 261, 777, 858
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 4 cut(s) 403, 438, 515, 732
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 587
Bsp143I GATC 6 cut(s) 64, 84, 141, 552, 673, 994
Bsp1720I GCTNAGC 1 cut(s) 190
BspACI CCGC 6 cut(s) 254, 257, 298, 481, 842, 886
BspANI GGCC 4 cut(s) 403, 438, 515, 732
BspCNI CTCAG 5 cut(s) 203, 209, 747, 895, 944
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 5 cut(s) 118, 402, 457, 675, 846
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 4 cut(s) 72, 79, 668, 681
BspT104I TTCGAA 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 602
BsrGI TGTACA 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 3 cut(s) 120, 278, 353
BssMI GATC 6 cut(s) 64, 84, 141, 552, 673, 994
BssSI CACGAG 1 cut(s) 762
Bst2BI CACGAG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 6 cut(s) 357, 633, 774, 791, 812, 1025
Bst6I CTCTTC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 5 cut(s) 190, 196, 734, 882, 931
BstDSI CCRYGG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 6 cut(s) 67, 87, 144, 555, 676, 997
BstMAI GTCTC 2 cut(s) 255, 885
BstMBI GATC 6 cut(s) 64, 84, 141, 552, 673, 994
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 5 cut(s) 172, 214, 262, 400, 480
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 5 cut(s) 119, 120, 278, 723, 1027
BstSFI CTRYAG 1 cut(s) 80
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 5 cut(s) 88, 198, 470, 494, 649
BstV2I GAAGAC 2 cut(s) 294, 549
BstX2I RGATCY 3 cut(s) 64, 84, 673
BstYI RGATCY 3 cut(s) 64, 84, 673
Bsu36I CCTNAGG 1 cut(s) 196
BsuRI GGCC 4 cut(s) 403, 438, 515, 732
BtgI CCRYGG 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 4 cut(s) 310, 401, 845, 1025
Cfr9I CCCGGG 1 cut(s) 120
Csp6I GTAC 4 cut(s) 154, 433, 588, 612
CviAII CATG 4 cut(s) 172, 227, 314, 585
CviQI GTAC 4 cut(s) 154, 433, 588, 612
DdeI CTNAG 5 cut(s) 190, 196, 734, 882, 931
DpnI GATC 6 cut(s) 66, 86, 143, 554, 675, 996
DpnII GATC 6 cut(s) 64, 84, 141, 552, 673, 994
EaeI YGGCCR 2 cut(s) 436, 513
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 732
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 3 cut(s) 310, 845, 1025
Eco47III AGCGCT 1 cut(s) 165
Eco57I CTGAAG 3 cut(s) 768, 840, 927
Eco81I CCTNAGG 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 2 cut(s) 401, 845
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 976
FaeI CATG 4 cut(s) 175, 230, 317, 588
FalI AAGNNNNNCTT 2 cut(s) 814, 846
FaqI GGGAC 3 cut(s) 261, 777, 858
FatI CATG 4 cut(s) 171, 226, 313, 584
FauI CCCGC 2 cut(s) 835, 879
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 6 cut(s) 77, 187, 257, 484, 508, 638
Fsp4HI GCNGC 6 cut(s) 77, 187, 257, 484, 508, 638
FspBI CTAG 5 cut(s) 50, 72, 183, 333, 668
GlaI GCGC 1 cut(s) 165
GluI GCNGC 6 cut(s) 77, 187, 257, 484, 508, 638
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 4 cut(s) 403, 438, 515, 732
HapII CCGG 4 cut(s) 121, 280, 603, 725
HhaI GCGC 1 cut(s) 166
Hin1II CATG 4 cut(s) 175, 230, 317, 588
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 6 cut(s) 34, 248, 290, 326, 738, 1032
HpaII CCGG 4 cut(s) 121, 280, 603, 725
HphI GGTGA 4 cut(s) 215, 482, 621, 789
Hpy166II GTNNAC 3 cut(s) 360, 590, 901
Hpy188I TCNGA 4 cut(s) 295, 538, 737, 915
Hpy188III TCNNGA 4 cut(s) 198, 407, 764, 858
Hpy8I GTNNAC 3 cut(s) 360, 590, 901
Hpy99I CGWCG 1 cut(s) 553
HpyAV CCTTC 5 cut(s) 436, 630, 722, 743, 793
HpyCH4III ACNGT 6 cut(s) 357, 633, 774, 791, 812, 1025
HpyCH4IV ACGT 3 cut(s) 96, 498, 532
HpyCH4V TGCA 4 cut(s) 12, 233, 486, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 214, 262, 400, 480
HpyF3I CTNAG 5 cut(s) 190, 196, 734, 882, 931
HpySE526I ACGT 3 cut(s) 96, 498, 532
Hsp92II CATG 4 cut(s) 175, 230, 317, 588
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 6 cut(s) 64, 84, 141, 552, 673, 994
LmnI GCTCC 3 cut(s) 25, 455, 940
Lsp1109I GCAGC 5 cut(s) 88, 198, 470, 494, 649
MaeI CTAG 5 cut(s) 50, 72, 183, 333, 668
MaeII ACGT 3 cut(s) 96, 498, 532
MaeIII GTNAC 2 cut(s) 376, 627
MalI GATC 6 cut(s) 66, 86, 143, 554, 675, 996
MboI GATC 6 cut(s) 64, 84, 141, 552, 673, 994
MboII GAAGA 5 cut(s) 96, 299, 349, 554, 822
MflI RGATCY 3 cut(s) 64, 84, 673
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 5 cut(s) 125, 234, 302, 561, 907
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 4 cut(s) 43, 257, 284, 747
MmeI TCCRAC 4 cut(s) 318, 404, 553, 962
Mox20I TGGCCA 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 826
MscI TGGCCA 1 cut(s) 515
MseI TTAA 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 2 cut(s) 483, 886
MspI CCGG 4 cut(s) 121, 280, 603, 725
MspR9I CCNGG 5 cut(s) 121, 122, 280, 725, 1029
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 1029
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 5 cut(s) 172, 214, 262, 400, 480
NciI CCSGG 4 cut(s) 121, 122, 280, 725
NdeII GATC 6 cut(s) 64, 84, 141, 552, 673, 994
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 4 cut(s) 175, 230, 317, 588
NlaIV GGNNCC 5 cut(s) 118, 402, 457, 675, 846
NmuCI GTSAC 1 cut(s) 627
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 238
PceI AGGCCT 1 cut(s) 732
PciI ACATGT 1 cut(s) 584
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 2 cut(s) 326, 1032
Pfl23II CGTACG 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 965
PfoI TCCNGGA 2 cut(s) 723, 1027
PkrI GCNGC 6 cut(s) 78, 188, 258, 485, 509, 639
PleI GAGTC 4 cut(s) 42, 256, 284, 746
PpsI GAGTC 4 cut(s) 42, 256, 284, 746
PpuMI RGGWCCY 1 cut(s) 845
PscI ACATGT 1 cut(s) 584
Psp1406I AACGTT 2 cut(s) 96, 532
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 1 cut(s) 1027
PspGI CCWGG 1 cut(s) 1027
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 5 cut(s) 118, 402, 457, 675, 846
PspPI GGNCC 4 cut(s) 310, 401, 845, 1025
PspPPI RGGWCCY 1 cut(s) 845
PsuI RGATCY 3 cut(s) 64, 84, 673
RsaI GTAC 4 cut(s) 155, 434, 589, 613
RsaNI GTAC 4 cut(s) 154, 433, 588, 612
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 6 cut(s) 77, 187, 257, 484, 508, 638
Sau3AI GATC 6 cut(s) 64, 84, 141, 552, 673, 994
Sau96I GGNCC 4 cut(s) 310, 401, 845, 1025
ScaI AGTACT 1 cut(s) 613
SchI GAGTC 4 cut(s) 43, 257, 284, 747
ScrFI CCNGG 5 cut(s) 121, 122, 280, 725, 1029
SfcI CTRYAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 3 cut(s) 310, 845, 1025
SmaI CCCGGG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 5 cut(s) 125, 234, 302, 561, 907
SseBI AGGCCT 1 cut(s) 732
SsiI CCGC 6 cut(s) 254, 257, 298, 481, 842, 886
SspMI CTAG 5 cut(s) 50, 72, 183, 333, 668
StuI AGGCCT 1 cut(s) 732
StyD4I CCNGG 5 cut(s) 119, 120, 278, 723, 1027
TaaI ACNGT 6 cut(s) 357, 633, 774, 791, 812, 1025
TaiI ACGT 3 cut(s) 99, 501, 535
TaqI TCGA 1 cut(s) 238
TasI AATT 5 cut(s) 125, 234, 302, 561, 907
TatI WGTACW 2 cut(s) 587, 611
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 2 cut(s) 326, 1032
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TseFI GTSAC 1 cut(s) 627
TseI GCWGC 5 cut(s) 76, 186, 483, 507, 637
Tsp45I GTSAC 1 cut(s) 627
TspDTI ATGAA 2 cut(s) 285, 555
TspGWI ACGGA 1 cut(s) 665
TspMI CCCGGG 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 965
VpaK11BI GGWCC 3 cut(s) 310, 845, 1025
XapI RAATTY 2 cut(s) 302, 907
XceI RCATGY 1 cut(s) 588
XmaI CCCGGG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 5 cut(s) 50, 72, 183, 333, 668
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.