Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003120

Physical Location & Seq

Genomic Coordinates Forward (+)

52010172 .. 52010989

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0417600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATGGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATTTAGGAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATGATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGATAGTTCGTGATAACATACTCTATGGGAAGCCAATTAATGGACAAGAACAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

242

Amino Acids

27.2

Weight (kDa)

7.62

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	165 - 211	1.1e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11070 AT4G11070 AT4G23810
fragaria_vesca	FvH4_5g04370 FvH4_7g31050
malus_domestica	MD01G1215300.v1.1 MD06G1104100.v1.1 MD07G1285200.v1.1 MD07G1285400.v1.1 MD14G1123000.v1.1
prunus_persica	Prupe.2G307400_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1
pyrus_communis	pycom01g22600 pycom06g09890 pycom07g25900
rosa_chinensis	RchiOBHm_Chr1g0380121 RchiOBHm_Chr7g0195191
rosa_laevigata	RLG00000004139 RLG00000026329
rosa_multiflora	Rmu_sc0001232.1_g000014 Rmu_sc0002381.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260680 Rroxscaffold_4G00279660
rosa_rugosa	Rorug01G0417600 Rorug07G0021500
rosa_samantha	Rh1AG442800 Rh1BG397700 Rh1CG411200 Rh1DG428500 Rh7AG148800 Rh7BG150100 Rh7CG153600 Rh7DG150000
rosa_wichuraiana	Rw1G038450 Rw7G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	710
AclWI	GGATC	2 cut(s)	34, 328
AcsI	RAATTY	4 cut(s)	86, 122, 424, 603
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	343, 710
AgsI	TTSAA	5 cut(s)	91, 127, 232, 391, 488
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	5 cut(s)	275, 412, 438, 557, 614
AluI	AGCT	5 cut(s)	275, 412, 438, 557, 614
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	34, 328
AlwNI	CAGNNNCTG	1 cut(s)	614
ApoI	RAATTY	4 cut(s)	86, 122, 424, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	177, 411
AvaII	GGWCC	1 cut(s)	545
BccI	CCATC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	3 cut(s)	233, 480, 654
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	215, 509
BfuI	GTATCC	3 cut(s)	233, 480, 654
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 710
Bse1I	ACTGG	2 cut(s)	182, 548
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	343, 710
BseMII	CTCAG	2 cut(s)	27, 129
BseNI	ACTGG	2 cut(s)	182, 548
BslFI	GGGAC	2 cut(s)	156, 224
BslI	CCNNNNNNNGG	2 cut(s)	343, 710
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	156, 224
BsmI	GAATGC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	352
Bsp143I	GATC	5 cut(s)	39, 57, 195, 333, 355
BspCNI	CTCAG	2 cut(s)	28, 130
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	34, 328
BspTNI	GGTCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	182, 548
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	5 cut(s)	39, 57, 195, 333, 355
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	50, 268
Bst6I	CTCTTC	2 cut(s)	75, 205
BstDEI	CTNAG	4 cut(s)	23, 36, 138, 281
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	42, 60, 198, 336, 358
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	5 cut(s)	39, 57, 195, 333, 355
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuI	GTATCC	3 cut(s)	233, 480, 654
BtsCI	GGATG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	193, 289
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	4 cut(s)	23, 36, 138, 281
DpnI	GATC	5 cut(s)	41, 59, 197, 335, 357
DpnII	GATC	5 cut(s)	39, 57, 195, 333, 355
Eam1104I	CTCTTC	2 cut(s)	75, 205
EarI	CTCTTC	2 cut(s)	75, 205
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	196, 292
FaqI	GGGAC	2 cut(s)	156, 224
FatI	CATG	2 cut(s)	192, 288
FokI	GGATG	1 cut(s)	193
FspBI	CTAG	2 cut(s)	215, 509
Hin1II	CATG	2 cut(s)	196, 292
HinfI	GANTC	1 cut(s)	476
HphI	GGTGA	2 cut(s)	177, 411
Hpy166II	GTNNAC	2 cut(s)	505, 545
Hpy188I	TCNGA	5 cut(s)	37, 139, 246, 430, 495
Hpy188III	TCNNGA	4 cut(s)	113, 473, 609, 680
Hpy8I	GTNNAC	2 cut(s)	505, 545
HpyAV	CCTTC	2 cut(s)	119, 148
HpyCH4III	ACNGT	2 cut(s)	50, 268
HpyCH4V	TGCA	2 cut(s)	251, 536
HpyF3I	CTNAG	4 cut(s)	23, 36, 138, 281
Hsp92II	CATG	2 cut(s)	196, 292
Kzo9I	GATC	5 cut(s)	39, 57, 195, 333, 355
LmnI	GCTCC	4 cut(s)	285, 417, 554, 611
LpnPI	CCDG	9 cut(s)	61, 88, 163, 312, 327, 486, 543, 561, 594
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	2 cut(s)	215, 509
MaeIII	GTNAC	2 cut(s)	66, 183
MalI	GATC	5 cut(s)	41, 59, 197, 335, 357
MboI	GATC	5 cut(s)	39, 57, 195, 333, 355
MboII	GAAGA	3 cut(s)	67, 92, 192
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	9 cut(s)	86, 103, 122, 146, 424, 483, 531, 603, 705
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	12, 133, 252, 310
MseI	TTAA	2 cut(s)	63, 708
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	76
NdeII	GATC	5 cut(s)	39, 57, 195, 333, 355
NlaIII	CATG	2 cut(s)	196, 292
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	710
PshBI	ATTAAT	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	63, 708
Sau3AI	GATC	5 cut(s)	39, 57, 195, 333, 355
Sau96I	GGNCC	1 cut(s)	545
ScaI	AGTACT	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	8 cut(s)	277, 301, 348, 414, 440, 510, 559, 616
SfaNI	GCATC	1 cut(s)	585
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	9 cut(s)	86, 103, 122, 146, 424, 483, 531, 603, 705
SspMI	CTAG	2 cut(s)	215, 509
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	50, 268
TaqI	TCGA	2 cut(s)	112, 618
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	9 cut(s)	86, 103, 122, 146, 424, 483, 531, 603, 705
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	63, 708
Tru9I	TTAA	2 cut(s)	63, 708
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	4 cut(s)	86, 122, 424, 603
XspI	CTAG	2 cut(s)	215, 509
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.