RchiOBHm_Chr1g0380121
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
65883541 .. 65884985
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60342

Sequence Viewer

Length: 1101 bp
ATGGGAGTGAATTGGGTGCAAAAGAGTGGTATTGTAAATGAGCTAACACGTGGCAGGGAGCTTGCTAGGCAGCTCCAGATCCATCTCAATGCTACATCAACTTTGAATCCTTCCACGAGCTCTCAAACAGCGTTAACTCGCGAGATGCTGATCCAAAAGATCATATCTTCCTACGAAAAGGCGCTTTCGATGCTCAATTCTAGCAGCTCAGCCCCAATGCCAGTAGCAGTAGAGCAACTACACCAACAACAACCTACATTTACAGTAGCTGCTTCCACAGGTGTTGTTACGATTCGAATGGCTGACTCCCCACCTTCGCTAAATGGGAGTCCTCGGAGTGAAGATTCCGATGACCACAAAGATCCCTCTAGAAAAAGGAAAGGTCTGGCAAGGTGGACAAAACAAGTAAGAGTAACATCAGGTATGGGGCTTGAAGGGCCTCTTGATGATGGCTTTAGCTGGAGGAAGTATGGCCAAAAGGACATCCTTGGAGCCAAATATCCGAGAGGGTATTACAGATGCACTCATCGAAATGTTCAAGGTTGTTTGGCCACAAAACAAGTGCAACGCTCCGATGAGGACCCAATGATCCTCGAAATTACTTACCGAGGAAGGCACACTTGTACTCAAGCAGCCTCCACCTCCGTAGCTAGTCCTCCTCCAAAACCAATGTCACCATTGCCTGATCAAAAACCAGAACCACCACAGATGAATCAGCAGCCTCAACATAATATGCTCTTAAGCCTCCCTGAAGGCCTCAGGGTCATAACCGAAGGCCTAGACACTAGTCATGATCATCGTGGCGAATTATTATTTCCCTCATTCAACAACAACAATTATGCGGGGAACTTTTCTCCTTCATTAACTATGCCTACTGCTTCAACTTCTGGGACAAACTATTTCTCTGTACTGTCTCAGCAGGACTTTGGTGGTAACCAAAATCTGCAGATCAGCGCTGCGGCCGAGTCTCATGATATAATCTCAGCTGCTACTTCAGCTTCCAACTCTCCGACTGTTGGTTTGGATTTTCCATTTGCTGAAGCTGATCATCAGATATTATACCCCAACTTCACTTTTGATGATCCTGGATTTTTTCCCTAA

Protein Analysis

366

Amino Acids

40.14

Weight (kDa)

6.55

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 149 - 208 5.3e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 842, 959
AclWI GGATC 5 cut(s) 73, 145, 356, 583, 1076
AcoI YGGCCR 3 cut(s) 472, 549, 960
AcuI CTGAAG 3 cut(s) 771, 978, 1059
AcvI CACGTG 1 cut(s) 50
AfaI GTAC 2 cut(s) 625, 909
AfeI AGCGCT 1 cut(s) 955
AfiI CCNNNNNNNGG 1 cut(s) 1016
AflII CTTAAG 1 cut(s) 739
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 5 cut(s) 106, 434, 539, 826, 882
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 1 cut(s) 1084
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 918, 972
AlwI GGATC 5 cut(s) 73, 145, 356, 583, 1076
AlwNI CAGNNNCTG 1 cut(s) 269
Aor51HI AGCGCT 1 cut(s) 955
AoxI GGCC 6 cut(s) 437, 472, 549, 754, 775, 960
ApeKI GCWGC 7 cut(s) 70, 204, 269, 632, 718, 956, 986
ArsI GACNNNNNNTTYG 4 cut(s) 656, 688, 1003, 1035
AspLEI GCGC 2 cut(s) 184, 956
AspS9I GGNCC 2 cut(s) 437, 580
AsuHPI GGTGA 1 cut(s) 666
AsuII TTCGAA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 758
BalI TGGCCA 2 cut(s) 474, 551
BanII GRGCYC 1 cut(s) 122
BauI CACGAG 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 7 cut(s) 82, 216, 256, 644, 730, 943, 973
BccI CCATC 2 cut(s) 90, 443
BciT130I CCWGG 1 cut(s) 1086
BclI TGATCA 3 cut(s) 685, 793, 1045
BcoDI GTCTC 2 cut(s) 918, 972
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 6 cut(s) 66, 201, 369, 651, 779, 786
BfmI CTRYAG 1 cut(s) 944
BfoI RGCGCY 2 cut(s) 185, 957
BfrI CTTAAG 1 cut(s) 739
BisI GCNGC 8 cut(s) 71, 205, 270, 633, 719, 957, 960, 987
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 8 cut(s) 72, 206, 271, 634, 720, 958, 961, 988
Bme1390I CCNGG 1 cut(s) 1086
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 437, 580
BmiI GGNNCC 2 cut(s) 493, 582
BmrFI CCNGG 1 cut(s) 1086
BmsI GCATC 3 cut(s) 135, 180, 509
BoxI GACNNNNGTC 1 cut(s) 786
BpmI CTGGAG 2 cut(s) 59, 481
Bpu1102I GCTNAGC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 612
BsaAI YACGTR 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 332, 487, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 1016
Bse1I ACTGG 1 cut(s) 221
Bse21I CCTNAGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 677
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 1 cut(s) 1086
BseDI CCNNGG 3 cut(s) 332, 487, 607
BseGI GGATG 1 cut(s) 483
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 1016
BseMI GCAATG 1 cut(s) 677
BseMII CTCAG 4 cut(s) 222, 772, 929, 996
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 648
BseX3I CGGCCG 1 cut(s) 960
BseXI GCAGC 7 cut(s) 82, 216, 256, 644, 730, 943, 973
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 963
BshFI GGCC 6 cut(s) 439, 474, 551, 756, 777, 962
BsiEI CGRYCG 1 cut(s) 963
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 1 cut(s) 1016
BsmAI GTCTC 2 cut(s) 918, 972
BsmFI GGGAC 1 cut(s) 904
BsnI GGCC 6 cut(s) 439, 474, 551, 756, 777, 962
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 122
Bsp1720I GCTNAGC 1 cut(s) 208
Bsp68I TCGCGA 1 cut(s) 141
BspACI CCGC 2 cut(s) 842, 959
BspANI GGCC 6 cut(s) 439, 474, 551, 756, 777, 962
BspCNI CTCAG 4 cut(s) 221, 771, 928, 995
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 2 cut(s) 790, 970
BspLI GGNNCC 2 cut(s) 493, 582
BspMAI CTGCAG 1 cut(s) 948
BspPI GGATC 5 cut(s) 73, 145, 356, 583, 1076
BspT104I TTCGAA 1 cut(s) 295
BspTI CTTAAG 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 677
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 332, 487, 607
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 487
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 1086
Bst4CI ACNGT 3 cut(s) 265, 912, 1015
BstAFI CTTAAG 1 cut(s) 739
BstBAI YACGTR 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 208, 758, 915, 982
BstEII GGTNACC 1 cut(s) 932
BstF5I GGATG 1 cut(s) 483
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 2 cut(s) 185, 957
BstHHI GCGC 2 cut(s) 184, 956
BstMAI GTCTC 2 cut(s) 918, 972
BstMCI CGRYCG 1 cut(s) 963
BstMWI GCNNNNNNNGC 4 cut(s) 67, 190, 436, 995
BstNI CCWGG 1 cut(s) 1086
BstPAI GACNNNNGTC 1 cut(s) 786
BstPI GGTNACC 1 cut(s) 932
BstSCI CCNGG 1 cut(s) 1084
BstSFI CTRYAG 1 cut(s) 944
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 7 cut(s) 82, 216, 256, 644, 730, 943, 973
BstX2I RGATCY 2 cut(s) 78, 361
BstYI RGATCY 2 cut(s) 78, 361
BstZI CGGCCG 1 cut(s) 960
Bsu36I CCTNAGG 1 cut(s) 758
BsuRI GGCC 6 cut(s) 439, 474, 551, 756, 777, 962
BtsCI GGATG 1 cut(s) 483
BtuMI TCGCGA 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 2 cut(s) 790, 970
CfoI GCGC 2 cut(s) 184, 956
Cfr13I GGNCC 2 cut(s) 437, 580
Csp6I GTAC 2 cut(s) 624, 908
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 2 cut(s) 791, 971
CviQI GTAC 2 cut(s) 624, 908
DdeI CTNAG 4 cut(s) 208, 758, 915, 982
EaeI YGGCCR 3 cut(s) 472, 549, 960
EagI CGGCCG 1 cut(s) 960
Ecl136II GAGCTC 1 cut(s) 120
EclXI CGGCCG 1 cut(s) 960
Eco130I CCWWGG 1 cut(s) 487
Eco147I AGGCCT 2 cut(s) 756, 777
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 580
Eco47III AGCGCT 1 cut(s) 955
Eco52I CGGCCG 1 cut(s) 960
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 771, 978, 1059
Eco72I CACGTG 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 758
Eco91I GGTNACC 1 cut(s) 932
EcoICRI GAGCTC 1 cut(s) 120
EcoO109I RGGNCCY 2 cut(s) 437, 580
EcoO65I GGTNACC 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 1084
EcoT14I CCWWGG 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 2 cut(s) 794, 974
FalI AAGNNNNNCTT 4 cut(s) 426, 458, 604, 636
FaqI GGGAC 1 cut(s) 904
FatI CATG 2 cut(s) 790, 970
FauI CCCGC 1 cut(s) 835
FbaI TGATCA 3 cut(s) 685, 793, 1045
Fnu4HI GCNGC 8 cut(s) 71, 205, 270, 633, 719, 957, 960, 987
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 8 cut(s) 71, 205, 270, 633, 719, 957, 960, 987
FspBI CTAG 6 cut(s) 66, 201, 369, 651, 779, 786
GlaI GCGC 2 cut(s) 183, 955
GluI GCNGC 8 cut(s) 71, 205, 270, 633, 719, 957, 960, 987
GsuI CTGGAG 2 cut(s) 59, 481
HaeII RGCGCY 2 cut(s) 185, 957
HaeIII GGCC 6 cut(s) 439, 474, 551, 756, 777, 962
HhaI GCGC 2 cut(s) 184, 956
Hin1II CATG 2 cut(s) 794, 974
Hin6I GCGC 2 cut(s) 182, 954
HinP1I GCGC 2 cut(s) 182, 954
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 7 cut(s) 106, 292, 305, 328, 344, 712, 965
HpaI GTTAAC 1 cut(s) 135
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 2 cut(s) 135, 396
Hpy188I TCNGA 6 cut(s) 336, 349, 504, 574, 1011, 1053
Hpy188III TCNNGA 6 cut(s) 76, 140, 369, 443, 791, 971
Hpy8I GTNNAC 2 cut(s) 135, 396
HpyAV CCTTC 7 cut(s) 120, 324, 428, 606, 746, 767, 867
HpyCH4III ACNGT 3 cut(s) 265, 912, 1015
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 19, 522, 565, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 190, 436, 995
HpyF3I CTNAG 4 cut(s) 208, 758, 915, 982
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 794, 974
HspAI GCGC 2 cut(s) 182, 954
Ksp22I TGATCA 3 cut(s) 685, 793, 1045
KspAI GTTAAC 1 cut(s) 135
LmnI GCTCC 4 cut(s) 58, 78, 491, 575
Lsp1109I GCAGC 7 cut(s) 82, 216, 256, 644, 730, 943, 973
LweI GCATC 3 cut(s) 135, 180, 509
MaeI CTAG 6 cut(s) 66, 201, 369, 651, 779, 786
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 4 cut(s) 286, 412, 672, 932
MboII GAAGA 2 cut(s) 159, 353
MflI RGATCY 2 cut(s) 78, 361
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 2 cut(s) 474, 551
MluCI AATT 5 cut(s) 10, 196, 597, 806, 835
MluNI TGGCCA 2 cut(s) 474, 551
MlyI GAGTC 3 cut(s) 299, 337, 974
MmeI TCCRAC 2 cut(s) 1026, 1034
Mox20I TGGCCA 2 cut(s) 474, 551
MscI TGGCCA 2 cut(s) 474, 551
MseI TTAA 3 cut(s) 134, 740, 863
MslI CAYNNNNRTG 2 cut(s) 87, 531
Msp20I TGGCCA 2 cut(s) 474, 551
MspA1I CMGCKG 1 cut(s) 986
MspCI CTTAAG 1 cut(s) 739
MspR9I CCNGG 1 cut(s) 1086
MvaI CCWGG 1 cut(s) 1086
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 67, 190, 436, 995
NlaIII CATG 2 cut(s) 794, 974
NlaIV GGNNCC 2 cut(s) 493, 582
NmeAIII GCCGAG 1 cut(s) 988
NmuCI GTSAC 1 cut(s) 672
NruI TCGCGA 1 cut(s) 141
NspV TTCGAA 1 cut(s) 295
PagI TCATGA 2 cut(s) 790, 970
PceI AGGCCT 2 cut(s) 756, 777
PfeI GAWTC 4 cut(s) 106, 292, 344, 712
PfoI TCCNGGA 1 cut(s) 1084
PkrI GCNGC 8 cut(s) 72, 206, 271, 634, 720, 958, 961, 988
PleI GAGTC 3 cut(s) 299, 336, 973
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 3 cut(s) 299, 336, 973
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 580
PshAI GACNNNNGTC 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 1084
PspCI CACGTG 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 932
PspGI CCWGG 1 cut(s) 1084
PspN4I GGNNCC 2 cut(s) 493, 582
PspPI GGNCC 2 cut(s) 437, 580
PspPPI RGGWCCY 1 cut(s) 580
PstI CTGCAG 1 cut(s) 948
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 78, 361
PvuII CAGCTG 1 cut(s) 986
RruI TCGCGA 1 cut(s) 141
RsaI GTAC 2 cut(s) 625, 909
RsaNI GTAC 2 cut(s) 624, 908
RseI CAYNNNNRTG 2 cut(s) 87, 531
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 3 cut(s) 134, 740, 863
SatI GCNGC 8 cut(s) 71, 205, 270, 633, 719, 957, 960, 987
Sau96I GGNCC 2 cut(s) 437, 580
SchI GAGTC 3 cut(s) 299, 337, 974
ScrFI CCNGG 1 cut(s) 1086
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 3 cut(s) 135, 180, 509
SfcI CTRYAG 1 cut(s) 944
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 1 cut(s) 580
SmiMI CAYNNNNRTG 2 cut(s) 87, 531
SmlI CTYRAG 2 cut(s) 627, 739
SmoI CTYRAG 2 cut(s) 627, 739
SpeI ACTAGT 1 cut(s) 785
Sse9I AATT 5 cut(s) 10, 196, 597, 806, 835
SseBI AGGCCT 2 cut(s) 756, 777
SsiI CCGC 2 cut(s) 842, 959
SspMI CTAG 6 cut(s) 66, 201, 369, 651, 779, 786
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 2 cut(s) 756, 777
StyD4I CCNGG 1 cut(s) 1084
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 3 cut(s) 265, 912, 1015
TaiI ACGT 1 cut(s) 52
TaqI TCGA 4 cut(s) 188, 295, 529, 594
TasI AATT 5 cut(s) 10, 196, 597, 806, 835
TatI WGTACW 2 cut(s) 623, 907
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 4 cut(s) 106, 292, 344, 712
Tru1I TTAA 3 cut(s) 134, 740, 863
Tru9I TTAA 3 cut(s) 134, 740, 863
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 7 cut(s) 70, 204, 269, 632, 718, 956, 986
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 2 cut(s) 725, 849
TspGWI ACGGA 1 cut(s) 634
Vha464I CTTAAG 1 cut(s) 739
VpaK11BI GGWCC 1 cut(s) 580
XbaI TCTAGA 1 cut(s) 368
XspI CTAG 6 cut(s) 66, 201, 369, 651, 779, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.