Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003120

Physical Location & Seq

Genomic Coordinates Reverse (-)

11873361 .. 11876616

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G117000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATTCTAGTAAGAGCTGGGAGCACAAGTCACTGCTAACTGAGATCATTGAAGGGATGGAACTAGCAAAACAGTTGAGGCTAAGTCTAAGTGCAGCATCTTCATCAGACACCAGACAATTTTTAGTGCAGAGGATATTGTCCTCCTATGAGAAAGCCCTTTTGATACTGAACTTCAGTGGGCCGGCTCAAAGTACTGCGGGTGCAATAGCCAGTGTGCCGGAGTCTCTTGTGTCGGCTTACGCAGGTCCTTGTTTTGATGACTATAACAAGAGTCCCAAGGATCATCAGGACCTCACAGATGTCTCCAAGAAGAGAAAGATCATGGCCAAATGGACAGACCATGTAATGAGAGTTAGCTCTGAGAATGGGATTGAAGGACCTCATGAAGATGGCCATAGCTGGAGAAAATATGGACAGAAGGACATCCTTGGAGCCAAACATCCAAGAAGCTATTACAGATGCACCTACCGAAACACGCAAAGCTGTTATGCTACAAAGCAAGTGCAAAGATCAGATGAAGACCCCACGATATTCGAAATCACATACAAAGGAAAGCATACATGTTCTCATGGTAGCAATTCAGTTCTACCACCACCATCACCAGAACAGCAAGAACAAAAACGAAACAAGCAAAATAATACTTCTCACCAACAGCAGTCTCAAGGAATCCAAATGAGCTTTCCGACTAATCTGAGAGTTGATACCAAGTTCTTGGAAGACAGAGAGAACATGGCATCTCCATTCTCTTTCACTTCAACTTCATTTGGATGTATGATGCCTGATGATGCCTTTCTATCTTCAATGCTTGATGATAACAACACTTTCTTTGACAACTTCAATCATTCATTGCTATCTCCAGCCGCAGGCGAATCAAACTACTATTTGATGCCACCAAGCCAGATGAGAAACATTGCAGGAAACGAGCAACTTTCAGAATGTGGTCTTACTGAGATCATCTCAGCCAACAATTCGTCAACCAATTCTCCAATTCCAGAGATGGATTTTCCACTGGAGCCAGTGGAAATTGAGCCCAATTTCCCATTTGACACCACAGGAATTTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 WRKY

Protein Analysis

357

Amino Acids

39.92

Weight (kDa)

5.41

Isoelectric Point (pI)

64.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11070 AT4G11070 AT4G23810
fragaria_vesca	FvH4_5g04370 FvH4_7g31050
malus_domestica	MD01G1215300.v1.1 MD06G1104100.v1.1 MD07G1285200.v1.1 MD07G1285400.v1.1 MD14G1123000.v1.1
prunus_persica	Prupe.2G307400_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1
pyrus_communis	pycom01g22600 pycom06g09890 pycom07g25900
rosa_chinensis	RchiOBHm_Chr1g0380121 RchiOBHm_Chr7g0195191
rosa_laevigata	RLG00000004139 RLG00000026329
rosa_multiflora	Rmu_sc0001232.1_g000014 Rmu_sc0002381.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260680 Rroxscaffold_4G00279660
rosa_rugosa	Rorug01G0417600 Rorug07G0021500
rosa_samantha	Rh1AG442800 Rh1BG397700 Rh1CG411200 Rh1DG428500 Rh7AG148800 Rh7BG150100 Rh7CG153600 Rh7DG150000
rosa_wichuraiana	Rw1G038450 Rw7G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	2 cut(s)	200, 864
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	2 cut(s)	327, 394
AcsI	RAATTY	1 cut(s)	1059
AcuI	CTGAAG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	53, 377, 759, 804, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	6 cut(s)	18, 360, 402, 453, 486, 681
AluI	AGCT	6 cut(s)	18, 360, 402, 453, 486, 681
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	3 cut(s)	231, 310, 666
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	3 cut(s)	182, 327, 394
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	1059
AspS9I	GGNCC	4 cut(s)	182, 248, 292, 380
AsuHPI	GGTGA	2 cut(s)	594, 641
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	3 cut(s)	248, 292, 380
BalI	TGGCCA	2 cut(s)	329, 396
BanII	GRGCYC	1 cut(s)	1035
BbsI	GAAGAC	2 cut(s)	528, 726
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	4 cut(s)	52, 386, 607, 994
BcoDI	GTCTC	3 cut(s)	231, 310, 666
BfaI	CTAG	2 cut(s)	9, 65
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	96, 864
BlsI	GCNGC	2 cut(s)	97, 865
BmcAI	AGTACT	1 cut(s)	196
Bme18I	GGWCC	3 cut(s)	248, 292, 380
BmgT120I	GGNCC	4 cut(s)	182, 248, 292, 380
BmiI	GGNNCC	2 cut(s)	436, 1017
BmsI	GCATC	6 cut(s)	107, 452, 746, 768, 778, 879
BpiI	GAAGAC	2 cut(s)	528, 726
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpmI	CTGGAG	3 cut(s)	424, 843, 1034
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	279, 430
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 970, 1000
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	213, 1017, 1019
Bse3DI	GCAATG	2 cut(s)	848, 912
BseDI	CCNNGG	2 cut(s)	279, 430
BseGI	GGATG	4 cut(s)	63, 426, 442, 776
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMI	GCAATG	2 cut(s)	848, 912
BseMII	CTCAG	5 cut(s)	33, 354, 686, 942, 975
BseNI	ACTGG	3 cut(s)	213, 1017, 1019
BseXI	GCAGC	1 cut(s)	107
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	114, 149
BshFI	GGCC	3 cut(s)	184, 329, 396
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	185, 221
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	3 cut(s)	231, 310, 666
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	184, 329, 396
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	27, 1035
Bsp143I	GATC	5 cut(s)	45, 283, 321, 512, 954
BspACI	CCGC	2 cut(s)	200, 864
BspANI	GGCC	3 cut(s)	184, 329, 396
BspCNI	CTCAG	5 cut(s)	34, 355, 687, 943, 974
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	436, 1017
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	537
BsrDI	GCAATG	2 cut(s)	848, 912
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	3 cut(s)	213, 1017, 1019
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	279, 430
BssMI	GATC	5 cut(s)	45, 283, 321, 512, 954
BssT1I	CCWWGG	2 cut(s)	279, 430
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	186, 868
BstDEI	CTNAG	7 cut(s)	42, 83, 89, 363, 695, 951, 961
BstF5I	GGATG	4 cut(s)	63, 426, 442, 776
BstKTI	GATC	5 cut(s)	48, 286, 324, 515, 957
BstMAI	GTCTC	3 cut(s)	231, 310, 666
BstMBI	GATC	5 cut(s)	45, 283, 321, 512, 954
BstNSI	RCATGY	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	2 cut(s)	528, 726
BstXI	CCANNNNNNTGG	1 cut(s)	715
BsuRI	GGCC	3 cut(s)	184, 329, 396
BtsCI	GGATG	4 cut(s)	63, 426, 442, 776
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	5 cut(s)	32, 184, 220, 1010, 1026
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	186, 868
CciI	TCATGA	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	182, 248, 292, 380
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	6 cut(s)	325, 344, 386, 564, 572, 733
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	7 cut(s)	42, 83, 89, 363, 695, 951, 961
DpnI	GATC	5 cut(s)	47, 285, 323, 514, 956
DpnII	GATC	5 cut(s)	45, 283, 321, 512, 954
EaeI	YGGCCR	2 cut(s)	327, 394
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	279, 430
Eco24I	GRGCYC	1 cut(s)	1035
Eco47I	GGWCC	3 cut(s)	248, 292, 380
Eco57I	CTGAAG	1 cut(s)	160
EcoO109I	RGGNCCY	3 cut(s)	248, 292, 380
EcoT14I	CCWWGG	2 cut(s)	279, 430
EcoT38I	GRGCYC	1 cut(s)	1035
ErhI	CCWWGG	2 cut(s)	279, 430
FaeI	CATG	6 cut(s)	328, 347, 389, 567, 575, 736
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	6 cut(s)	324, 343, 385, 563, 571, 732
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	96, 864
FokI	GGATG	4 cut(s)	70, 413, 429, 783
FriOI	GRGCYC	1 cut(s)	1035
Fsp4HI	GCNGC	2 cut(s)	96, 864
FspBI	CTAG	2 cut(s)	9, 65
GluI	GCNGC	2 cut(s)	96, 864
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	3 cut(s)	424, 843, 1034
HaeIII	GGCC	3 cut(s)	184, 329, 396
HapII	CCGG	2 cut(s)	185, 221
Hin1II	CATG	6 cut(s)	328, 347, 389, 567, 575, 736
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HinfI	GANTC	5 cut(s)	5, 224, 274, 669, 872
HpaII	CCGG	2 cut(s)	185, 221
HphI	GGTGA	2 cut(s)	594, 641
Hpy166II	GTNNAC	1 cut(s)	978
Hpy188I	TCNGA	6 cut(s)	109, 364, 517, 687, 696, 937
Hpy188III	TCNNGA	3 cut(s)	290, 386, 995
Hpy8I	GTNNAC	1 cut(s)	978
HpyAV	CCTTC	3 cut(s)	47, 371, 415
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	95, 130, 206, 465, 508, 917
HpyF3I	CTNAG	7 cut(s)	42, 83, 89, 363, 695, 951, 961
Hsp92II	CATG	6 cut(s)	328, 347, 389, 567, 575, 736
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	5 cut(s)	45, 283, 321, 512, 954
LmnI	GCTCC	3 cut(s)	22, 434, 1015
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	6 cut(s)	107, 452, 746, 768, 778, 879
MaeI	CTAG	2 cut(s)	9, 65
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	5 cut(s)	47, 285, 323, 514, 956
MboI	GATC	5 cut(s)	45, 283, 321, 512, 954
MboII	GAAGA	6 cut(s)	93, 325, 401, 533, 731, 792
MhlI	GDGCHC	2 cut(s)	27, 1035
MlsI	TGGCCA	2 cut(s)	329, 396
MluCI	AATT	8 cut(s)	119, 580, 970, 982, 990, 1026, 1036, 1059
MluNI	TGGCCA	2 cut(s)	329, 396
MlyI	GAGTC	2 cut(s)	233, 283
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	5 cut(s)	72, 126, 154, 305, 393
Mox20I	TGGCCA	2 cut(s)	329, 396
MroNI	GCCGGC	1 cut(s)	184
MscI	TGGCCA	2 cut(s)	329, 396
MslI	CAYNNNNRTG	2 cut(s)	390, 769
Msp20I	TGGCCA	2 cut(s)	329, 396
MspI	CCGG	2 cut(s)	185, 221
NaeI	GCCGGC	1 cut(s)	186
NdeII	GATC	5 cut(s)	45, 283, 321, 512, 954
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	328, 347, 389, 567, 575, 736
NlaIV	GGNNCC	2 cut(s)	436, 1017
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	537
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	5, 669, 872
PkrI	GCNGC	2 cut(s)	97, 865
PleI	GAGTC	2 cut(s)	232, 282
PpsI	GAGTC	2 cut(s)	232, 282
PpuMI	RGGWCCY	3 cut(s)	248, 292, 380
PscI	ACATGT	1 cut(s)	563
Psp5II	RGGWCCY	3 cut(s)	248, 292, 380
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	436, 1017
PspPI	GGNCC	4 cut(s)	182, 248, 292, 380
PspPPI	RGGWCCY	3 cut(s)	248, 292, 380
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	2 cut(s)	390, 769
SatI	GCNGC	2 cut(s)	96, 864
Sau3AI	GATC	5 cut(s)	45, 283, 321, 512, 954
Sau96I	GGNCC	4 cut(s)	182, 248, 292, 380
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	233, 283
SduI	GDGCHC	2 cut(s)	27, 1035
SfaNI	GCATC	6 cut(s)	107, 452, 746, 768, 778, 879
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	3 cut(s)	248, 292, 380
SmiMI	CAYNNNNRTG	2 cut(s)	390, 769
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
Sse9I	AATT	8 cut(s)	119, 580, 970, 982, 990, 1026, 1036, 1059
SsiI	CCGC	2 cut(s)	200, 864
SspMI	CTAG	2 cut(s)	9, 65
StyI	CCWWGG	2 cut(s)	279, 430
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	537
TasI	AATT	8 cut(s)	119, 580, 970, 982, 990, 1026, 1036, 1059
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	866
TfiI	GAWTC	3 cut(s)	5, 669, 872
TscAI	CASTG	5 cut(s)	39, 184, 220, 1017, 1026
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	5 cut(s)	93, 402, 534, 753, 837
TspRI	CASTG	5 cut(s)	39, 184, 220, 1017, 1026
VpaK11BI	GGWCC	3 cut(s)	248, 292, 380
XapI	RAATTY	1 cut(s)	1059
XceI	RCATGY	1 cut(s)	567
XspI	CTAG	2 cut(s)	9, 65
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.