MD07G1285200.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
34745168 .. 34746713
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1285200.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGGAGAACTGCAATATACATTGGGAGCAAAGGAGTCTTGTAAATGAGCTAGCACAAGGGAGGGAGCTGGCTAGGCAGCTACAGATCGATCTCAACGCTCCATCTTCCTCTCATGGAACCCGGGAACTGCTTGTTCAAAAGATCGTACTATCGTACGAAAAGGCGCTCTCCATTCTGAACTCTATCGGCTCACCCTCAGGGTGTGAGCAACAACAGCCCACAGGTCATGTCGCAACTCGAATGGTTGAGTCTCCGCCCCATTCACTAAATGGAAGCCCCTGGAGTGAGGACTCCGACCACGACAACAAAGATTCCTCTAGGAAGAGGAAAACTCTGCCAAGGTGGACACAACAAATAAGAGTTTCATCTGGTATGAGGCTTGAGGGGCCTCTTGATGATGGATTTAGTTGGAGAAAGTATGGCCAGAAGGACATACTTGGAGCCAGATATCCAAGAGGCTACTACCGGTGCACTCACCGAAACGTCCAGGACTGTTTTGCCACAAAGCAAGTCCAACGTTCCGACGAAGACCCAACGATCTTCGAAATTACATACAGAGGAAGGCACACATGTACACAAGCCTCTCCCGGCACAAGTACTCCCCCTTCACCGTCACCGTTGCCGCCCGAAAGGACGGAACCGCAGAATAACCTAGTGGAATCTCAACAAAATCAGCAACATTCGCAACAAAACATGCTCTTAAACATACCGGAAGGCCTCAGAGTCATTAGTGAAGGGTTAGACATTAGCGAGGAACTGTTCCCCTCCTTCAACAATCCCTCACCACTGAACAACAATTATCTGGGAAGTTTTTCTCCTCCCTTTGCGGGACCTACAACTTCAGGAACAAACTATTTCTCAATGTCTCAGCAGGGTTTTGGAGCTGAACAAAATTTTCAGAGTGGAGATATAATCTCGCCTGCAACTTCAGCTGCCAACTCTCCAAGTGTTGGTTTGGATTTCCCATTTGGTCAGGATGATCACTTGTTCCCCAACTTCTCATTTGACGGTCCAGGGTTCTTTTCCTAA

Protein Analysis

343

Amino Acids

38.05

Weight (kDa)

5.5

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 132 - 191 1.3e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 950
AciI CCGC 4 cut(s) 254, 623, 641, 827
AclI AACGTT 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 892
AcuI CTGAAG 2 cut(s) 825, 912
AfaI GTAC 4 cut(s) 147, 155, 574, 598
AfiI CCNNNNNNNGG 2 cut(s) 827, 950
AflIII ACRYGT 1 cut(s) 569
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 137, 772
AjnI CCWGG 3 cut(s) 278, 486, 1012
AluBI AGCT 5 cut(s) 49, 67, 79, 884, 932
AluI AGCT 5 cut(s) 49, 67, 79, 884, 932
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 2 cut(s) 255, 870
Alw44I GTGCAC 1 cut(s) 469
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 3 cut(s) 386, 421, 715
ApaLI GTGCAC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 76, 932
ApoI RAATTY 1 cut(s) 892
AsiGI ACCGGT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 3 cut(s) 386, 830, 1010
AsuC2I CCSGG 3 cut(s) 121, 122, 588
AsuHPI GGTGA 5 cut(s) 183, 467, 600, 606, 774
AsuII TTCGAA 1 cut(s) 543
AsuNHI GCTAGC 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 2 cut(s) 830, 1010
AxyI CCTNAGG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 423
BarI GAAGNNNNNNTAC 2 cut(s) 589, 621
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 88, 919
BccI CCATC 2 cut(s) 109, 392
BciT130I CCWGG 3 cut(s) 280, 488, 1014
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 3 cut(s) 121, 122, 588
BcoDI GTCTC 2 cut(s) 255, 870
BfaI CTAG 4 cut(s) 50, 72, 318, 653
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 3 cut(s) 77, 623, 933
BlsI GCNGC 3 cut(s) 78, 624, 934
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 6 cut(s) 121, 122, 280, 488, 588, 1014
Bme18I GGWCC 2 cut(s) 830, 1010
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 386, 830, 1010
BmiI GGNNCC 5 cut(s) 118, 387, 442, 639, 831
BmrFI CCNGG 6 cut(s) 121, 122, 280, 488, 588, 1014
BmtI GCTAGC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 534
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 301
Bpu14I TTCGAA 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 3 cut(s) 121, 122, 588
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 120, 278, 338, 1013
BsaWI WCCGGW 2 cut(s) 465, 709
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 827, 950
Bse118I RCCGGY 1 cut(s) 465
Bse21I CCTNAGG 1 cut(s) 196
BseBI CCWGG 3 cut(s) 280, 488, 1014
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 120, 278, 338, 1013
BseGI GGATG 1 cut(s) 982
BseLI CCNNNNNNNGG 2 cut(s) 827, 950
BseMII CTCAG 3 cut(s) 210, 733, 881
BseRI GAGGAG 1 cut(s) 807
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 2 cut(s) 88, 919
BshFI GGCC 3 cut(s) 388, 423, 717
BshTI ACCGGT 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 4 cut(s) 121, 466, 588, 710
BsiWI CGTACG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 2 cut(s) 827, 950
BsmAI GTCTC 2 cut(s) 255, 870
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 3 cut(s) 388, 423, 717
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 572
Bsp143I GATC 5 cut(s) 84, 88, 141, 537, 979
BspACI CCGC 4 cut(s) 254, 623, 641, 827
BspANI GGCC 3 cut(s) 388, 423, 717
BspCNI CTCAG 3 cut(s) 209, 732, 880
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 5 cut(s) 118, 387, 442, 639, 831
BspOI GCTAGC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 572
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 4 cut(s) 120, 278, 338, 1013
BssMI GATC 5 cut(s) 84, 88, 141, 537, 979
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 3 cut(s) 280, 488, 1014
Bst4CI ACNGT 5 cut(s) 494, 612, 618, 759, 1010
Bst6I CTCTTC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 572
BstBI TTCGAA 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 51, 69, 921
BstDEI CTNAG 3 cut(s) 196, 719, 867
BstF5I GGATG 1 cut(s) 982
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 5 cut(s) 87, 91, 144, 540, 982
BstMAI GTCTC 2 cut(s) 255, 870
BstMBI GATC 5 cut(s) 84, 88, 141, 537, 979
BstMWI GCNNNNNNNGC 5 cut(s) 73, 214, 385, 682, 929
BstNI CCWGG 3 cut(s) 280, 488, 1014
BstNSI RCATGY 2 cut(s) 573, 697
BstSCI CCNGG 6 cut(s) 119, 120, 278, 486, 586, 1012
BstSFI CTRYAG 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 2 cut(s) 88, 919
BstV2I GAAGAC 1 cut(s) 534
Bsu15I ATCGAT 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 196
BsuRI GGCC 3 cut(s) 388, 423, 717
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 1 cut(s) 982
BtsIMutI CAGTG 1 cut(s) 785
Cac8I GCNNGC 3 cut(s) 51, 69, 921
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 386, 830, 1010
Cfr9I CCCGGG 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 4 cut(s) 146, 154, 573, 597
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 4 cut(s) 113, 227, 570, 694
CviQI GTAC 4 cut(s) 146, 154, 573, 597
DdeI CTNAG 3 cut(s) 196, 719, 867
DpnI GATC 5 cut(s) 86, 90, 143, 539, 981
DpnII GATC 5 cut(s) 84, 88, 141, 537, 979
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 717
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 830, 1010
Eco57I CTGAAG 2 cut(s) 825, 912
Eco81I CCTNAGG 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 2 cut(s) 386, 830
EcoRII CCWGG 3 cut(s) 278, 486, 1012
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 4 cut(s) 116, 230, 573, 697
FaqI GGGAC 1 cut(s) 843
FatI CATG 4 cut(s) 112, 226, 569, 693
FauI CCCGC 1 cut(s) 820
FbaI TGATCA 1 cut(s) 979
Fnu4HI GCNGC 3 cut(s) 77, 623, 933
FokI GGATG 1 cut(s) 989
Fsp4HI GCNGC 3 cut(s) 77, 623, 933
FspBI CTAG 4 cut(s) 50, 72, 318, 653
GlaI GCGC 1 cut(s) 165
GluI GCNGC 3 cut(s) 77, 623, 933
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 3 cut(s) 388, 423, 717
HapII CCGG 4 cut(s) 121, 466, 588, 710
HhaI GCGC 1 cut(s) 166
Hin1II CATG 4 cut(s) 116, 230, 573, 697
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 6 cut(s) 34, 248, 290, 311, 659, 723
HpaII CCGG 4 cut(s) 121, 466, 588, 710
HphI GGTGA 5 cut(s) 183, 467, 600, 606, 774
Hpy166II GTNNAC 3 cut(s) 345, 471, 575
Hpy188I TCNGA 5 cut(s) 177, 295, 523, 722, 900
Hpy188III TCNNGA 3 cut(s) 392, 843, 974
Hpy8I GTNNAC 3 cut(s) 345, 471, 575
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 6 cut(s) 421, 555, 615, 707, 728, 778
HpyCH4III ACNGT 5 cut(s) 494, 612, 618, 759, 1010
HpyCH4IV ACGT 2 cut(s) 483, 517
HpyCH4V TGCA 3 cut(s) 12, 471, 923
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 214, 385, 682, 929
HpyF3I CTNAG 3 cut(s) 196, 719, 867
HpySE526I ACGT 2 cut(s) 483, 517
Hsp92II CATG 4 cut(s) 116, 230, 573, 697
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 5 cut(s) 84, 88, 141, 537, 979
LmnI GCTCC 5 cut(s) 25, 64, 103, 440, 881
Lsp1109I GCAGC 2 cut(s) 88, 919
MaeI CTAG 4 cut(s) 50, 72, 318, 653
MaeII ACGT 2 cut(s) 483, 517
MaeIII GTNAC 1 cut(s) 612
MalI GATC 5 cut(s) 86, 90, 143, 539, 981
MboI GATC 5 cut(s) 84, 88, 141, 537, 979
MboII GAAGA 4 cut(s) 96, 334, 532, 539
MhlI GDGCHC 1 cut(s) 473
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 3 cut(s) 546, 796, 892
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 4 cut(s) 43, 257, 284, 732
MmeI TCCRAC 4 cut(s) 318, 389, 538, 546
Mox20I TGGCCA 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 811
MscI TGGCCA 1 cut(s) 423
MseI TTAA 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 4 cut(s) 121, 466, 588, 710
MspR9I CCNGG 6 cut(s) 121, 122, 280, 488, 588, 1014
MvaI CCWGG 3 cut(s) 280, 488, 1014
MwoI GCNNNNNNNGC 5 cut(s) 73, 214, 385, 682, 929
NciI CCSGG 3 cut(s) 121, 122, 588
NdeII GATC 5 cut(s) 84, 88, 141, 537, 979
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 4 cut(s) 116, 230, 573, 697
NlaIV GGNNCC 5 cut(s) 118, 387, 442, 639, 831
NmuCI GTSAC 1 cut(s) 612
NspI RCATGY 2 cut(s) 573, 697
NspV TTCGAA 1 cut(s) 543
PceI AGGCCT 1 cut(s) 717
PciI ACATGT 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 2 cut(s) 311, 659
Pfl23II CGTACG 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 950
PfoI TCCNGGA 1 cut(s) 486
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 3 cut(s) 78, 624, 934
PleI GAGTC 4 cut(s) 42, 256, 284, 731
PpsI GAGTC 4 cut(s) 42, 256, 284, 731
PpuMI RGGWCCY 1 cut(s) 830
PscI ACATGT 1 cut(s) 569
Psp1406I AACGTT 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 830
Psp6I CCWGG 3 cut(s) 278, 486, 1012
PspGI CCWGG 3 cut(s) 278, 486, 1012
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 5 cut(s) 118, 387, 442, 639, 831
PspPI GGNCC 3 cut(s) 386, 830, 1010
PspPPI RGGWCCY 1 cut(s) 830
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 4 cut(s) 147, 155, 574, 598
RsaNI GTAC 4 cut(s) 146, 154, 573, 597
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 3 cut(s) 77, 623, 933
Sau3AI GATC 5 cut(s) 84, 88, 141, 537, 979
Sau96I GGNCC 3 cut(s) 386, 830, 1010
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 4 cut(s) 43, 257, 284, 732
ScrFI CCNGG 6 cut(s) 121, 122, 280, 488, 588, 1014
SduI GDGCHC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 543
SinI GGWCC 2 cut(s) 830, 1010
SmaI CCCGGG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 3 cut(s) 546, 796, 892
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 4 cut(s) 254, 623, 641, 827
SspMI CTAG 4 cut(s) 50, 72, 318, 653
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 6 cut(s) 119, 120, 278, 486, 586, 1012
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 5 cut(s) 494, 612, 618, 759, 1010
TaiI ACGT 2 cut(s) 486, 520
TaqI TCGA 3 cut(s) 87, 238, 543
TasI AATT 3 cut(s) 546, 796, 892
TatI WGTACW 2 cut(s) 572, 596
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 2 cut(s) 311, 659
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 2 cut(s) 76, 932
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 650
TspMI CCCGGG 1 cut(s) 120
TspRI CASTG 1 cut(s) 792
Van91I CCANNNNNTGG 1 cut(s) 950
VneI GTGCAC 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 830, 1010
XapI RAATTY 1 cut(s) 892
XceI RCATGY 2 cut(s) 573, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 4 cut(s) 50, 72, 318, 653
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.