Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003120

Physical Location & Seq

Genomic Coordinates Reverse (-)

22481936 .. 22484489

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGACAAGTACCATAACATGGGAGTGAACTGGGAGCAAAAGACTAGTCTTGTAAATGAGCTAACACAAGGCAGGGAGCTAGCTAGGCAACTGCAGATCCATCTCAATGCTACGCCAACTTTGAATCCTTCTGCGAGCTCTCAAACAGCGTTGGCTCGCGAGGTTCTGATCCAAAAGATCATATCTTCCTTAGAGAAGGCGCTTTCGATGCTCAGTTCTAGCAGCTCCTCACCCCAAATTGCAGTAGCAGTAGAGGAACTACACCAGCAACAACCTACATTTACAGTAGCTGCTGCCACAGGTGTTGTTACAATCCGAATGGCTAACTCCCCACCTTCGCTAAATGGGAGTCCTCGGAGTGAGGACTCTGATGACCACAAAGATCCCTCTAAGAAAAGGAAAGTTCCAGCACGGTGGACCAAACAAGTAAGAGTAACATCAGGTATGGGGCTTGAAGGGCCTCTTGATGATGGCTTTAGCTGGAGGAAGTATGGCCAGAAGGACATTCTTGGAGCCAAATATCCGAGAGGGTATTATAGATGCACTCATCGAAATGTTCAAGGTTGCTTGGCCACAAAACAAGTGCAACGCTCCGATGAGGACCCAATGATCCTCGAAATTACTTACCGAGGAAGGCACACTTGTACTCAAGCAGCCTCCACCACCGTAACTAGTCCTCCTCCAAAACCAATGTCACCATTGCCTGAGCAAAAACCAGAACCACCAAAGATCAATCACCAGCCTCAACATAATATGCTCTTAAGCCACCCCGAAGGCCTCAGGGTCATAACCGAAGGCCTAGACACTAGTCATGATCGTCGTGACGAATTAGTATTCTCCTCGTTTAACAACAATTATGTGGGGAATTTTTCTCCTCCATTAACTATGCCTACAGCTTCAACTTCTGGGACAAACTATTTCTCTGTACTGTCTCAGCAAGACTTTGGTGGCAGCCAAAATATGCAGATCAGCGCTGCGGCCGAGCCTCATGATATAATCTCAGCTGCTACTTCAGCTACCAACTCTCCAACAGTTGGTATAGATTTTCCATTTGCTCAAGCTGATCATCAGATATTATACCCCAACTTCACTTTTGATGATCCTGGATTTTTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

373

Amino Acids

40.96

Weight (kDa)

6.64

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	156 - 215	5.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11070 AT4G11070 AT4G23810
fragaria_vesca	FvH4_5g04370 FvH4_7g31050
malus_domestica	MD01G1215300.v1.1 MD06G1104100.v1.1 MD07G1285200.v1.1 MD07G1285400.v1.1 MD14G1123000.v1.1
prunus_persica	Prupe.2G307400_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1
pyrus_communis	pycom01g22600 pycom06g09890 pycom07g25900
rosa_chinensis	RchiOBHm_Chr1g0380121 RchiOBHm_Chr7g0195191
rosa_laevigata	RLG00000004139 RLG00000026329
rosa_multiflora	Rmu_sc0001232.1_g000014 Rmu_sc0002381.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260680 Rroxscaffold_4G00279660
rosa_rugosa	Rorug01G0417600 Rorug07G0021500
rosa_samantha	Rh1AG442800 Rh1BG397700 Rh1CG411200 Rh1DG428500 Rh7AG148800 Rh7BG150100 Rh7CG153600 Rh7DG150000
rosa_wichuraiana	Rw1G038450 Rw7G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	19, 1034
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	977
AclWI	GGATC	5 cut(s)	91, 163, 377, 604, 1094
AcoI	YGGCCR	3 cut(s)	493, 570, 978
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	996
AfaI	GTAC	3 cut(s)	11, 646, 927
AfeI	AGCGCT	1 cut(s)	973
AfiI	CCNNNNNNNGG	2 cut(s)	19, 1034
AflII	CTTAAG	1 cut(s)	760
AgsI	TTSAA	4 cut(s)	124, 455, 560, 900
AhlI	ACTAGT	3 cut(s)	44, 671, 806
AjnI	CCWGG	1 cut(s)	1102
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	936
AlwI	GGATC	5 cut(s)	91, 163, 377, 604, 1094
AlwNI	CAGNNNCTG	1 cut(s)	290
Aor51HI	AGCGCT	1 cut(s)	973
AoxI	GGCC	6 cut(s)	458, 493, 570, 775, 796, 978
ApeKI	GCWGC	7 cut(s)	222, 290, 293, 653, 951, 974, 1004
ApoI	RAATTY	1 cut(s)	865
ArsI	GACNNNNNNTTYG	4 cut(s)	31, 63, 677, 709
AspLEI	GCGC	2 cut(s)	202, 974
AspS9I	GGNCC	3 cut(s)	417, 458, 601
AsuHPI	GGTGA	3 cut(s)	222, 687, 728
AsuNHI	GCTAGC	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	417, 601
AxyI	CCTNAGG	1 cut(s)	779
BalI	TGGCCA	2 cut(s)	495, 572
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	7 cut(s)	234, 277, 280, 665, 961, 963, 991
BccI	CCATC	2 cut(s)	108, 464
BciT130I	CCWGG	1 cut(s)	1104
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	1 cut(s)	936
BcuI	ACTAGT	3 cut(s)	44, 671, 806
BfaI	CTAG	7 cut(s)	45, 80, 84, 219, 672, 800, 807
BfmI	CTRYAG	2 cut(s)	92, 891
BfoI	RGCGCY	2 cut(s)	203, 975
BfrI	CTTAAG	1 cut(s)	760
BisI	GCNGC	8 cut(s)	223, 291, 294, 654, 952, 975, 978, 1005
BlsI	GCNGC	8 cut(s)	224, 292, 295, 655, 953, 976, 979, 1006
Bme1390I	CCNGG	1 cut(s)	1104
Bme18I	GGWCC	2 cut(s)	417, 601
BmgT120I	GGNCC	3 cut(s)	417, 458, 601
BmiI	GGNNCC	2 cut(s)	514, 603
BmrFI	CCNGG	1 cut(s)	1104
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	198, 530
BmtI	GCTAGC	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	40
BoxI	GACNNNNGTC	1 cut(s)	807
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	2 cut(s)	633, 1041
BsaJI	CCNNGG	2 cut(s)	353, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	661, 691, 1009, 1039
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 1034
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	1104
BseDI	CCNNGG	2 cut(s)	353, 628
BseLI	CCNNNNNNNGG	2 cut(s)	19, 1034
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	5 cut(s)	226, 696, 793, 947, 1014
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	4 cut(s)	217, 669, 829, 864
BseX3I	CGGCCG	1 cut(s)	978
BseXI	GCAGC	7 cut(s)	234, 277, 280, 665, 961, 963, 991
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	981
BshFI	GGCC	6 cut(s)	460, 495, 572, 777, 798, 980
BsiEI	CGRYCG	1 cut(s)	981
BsiHKAI	GWGCWC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	2 cut(s)	19, 1034
BsmAI	GTCTC	1 cut(s)	936
BsmFI	GGGAC	1 cut(s)	922
BsnI	GGCC	6 cut(s)	460, 495, 572, 777, 798, 980
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp68I	TCGCGA	1 cut(s)	159
BspACI	CCGC	1 cut(s)	977
BspANI	GGCC	6 cut(s)	460, 495, 572, 777, 798, 980
BspCNI	CTCAG	5 cut(s)	225, 697, 792, 946, 1013
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	2 cut(s)	811, 988
BspLI	GGNNCC	2 cut(s)	514, 603
BspMAI	CTGCAG	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	5 cut(s)	91, 163, 377, 604, 1094
BspTI	CTTAAG	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	353, 628
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	5 cut(s)	286, 414, 667, 930, 1033
BstAFI	CTTAAG	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	81, 136, 157
BstDEI	CTNAG	7 cut(s)	190, 212, 390, 705, 779, 933, 1000
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	2 cut(s)	203, 975
BstHHI	GCGC	2 cut(s)	202, 974
BstMAI	GTCTC	1 cut(s)	936
BstMCI	CGRYCG	1 cut(s)	981
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 208, 457, 1013
BstNI	CCWGG	1 cut(s)	1104
BstPAI	GACNNNNGTC	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	1102
BstSFI	CTRYAG	2 cut(s)	92, 891
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	7 cut(s)	234, 277, 280, 665, 961, 963, 991
BstX2I	RGATCY	2 cut(s)	96, 382
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	2 cut(s)	96, 382
BstZI	CGGCCG	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	779
BsuRI	GGCC	6 cut(s)	460, 495, 572, 777, 798, 980
BtuMI	TCGCGA	1 cut(s)	159
Cac8I	GCNNGC	3 cut(s)	81, 136, 157
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	2 cut(s)	811, 988
CfoI	GCGC	2 cut(s)	202, 974
Cfr13I	GGNCC	3 cut(s)	417, 458, 601
Csp6I	GTAC	3 cut(s)	10, 645, 926
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	3 cut(s)	19, 812, 989
CviQI	GTAC	3 cut(s)	10, 645, 926
DdeI	CTNAG	7 cut(s)	190, 212, 390, 705, 779, 933, 1000
EaeI	YGGCCR	3 cut(s)	493, 570, 978
EagI	CGGCCG	1 cut(s)	978
Ecl136II	GAGCTC	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	978
Eco147I	AGGCCT	2 cut(s)	777, 798
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	417, 601
Eco47III	AGCGCT	1 cut(s)	973
Eco52I	CGGCCG	1 cut(s)	978
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	996
Eco81I	CCTNAGG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	458, 601
EcoRII	CCWGG	1 cut(s)	1102
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	3 cut(s)	22, 815, 992
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 625, 657
FaqI	GGGAC	1 cut(s)	922
FatI	CATG	3 cut(s)	18, 811, 988
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	8 cut(s)	223, 291, 294, 654, 952, 975, 978, 1005
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	8 cut(s)	223, 291, 294, 654, 952, 975, 978, 1005
FspBI	CTAG	7 cut(s)	45, 80, 84, 219, 672, 800, 807
GlaI	GCGC	2 cut(s)	201, 973
GluI	GCNGC	8 cut(s)	223, 291, 294, 654, 952, 975, 978, 1005
GsuI	CTGGAG	1 cut(s)	502
HaeII	RGCGCY	2 cut(s)	203, 975
HaeIII	GGCC	6 cut(s)	460, 495, 572, 777, 798, 980
HhaI	GCGC	2 cut(s)	202, 974
Hin1II	CATG	3 cut(s)	22, 815, 992
Hin6I	GCGC	2 cut(s)	200, 972
HinP1I	GCGC	2 cut(s)	200, 972
HinfI	GANTC	3 cut(s)	124, 349, 365
HphI	GGTGA	3 cut(s)	222, 687, 728
Hpy166II	GTNNAC	2 cut(s)	28, 417
Hpy188I	TCNGA	7 cut(s)	168, 317, 357, 370, 525, 595, 1071
Hpy188III	TCNNGA	5 cut(s)	158, 464, 812, 821, 989
Hpy8I	GTNNAC	2 cut(s)	28, 417
Hpy99I	CGWCG	1 cut(s)	822
HpyAV	CCTTC	8 cut(s)	138, 190, 345, 449, 493, 627, 767, 788
HpyCH4III	ACNGT	5 cut(s)	286, 414, 667, 930, 1033
HpyCH4V	TGCA	5 cut(s)	94, 242, 543, 586, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 208, 457, 1013
HpyF3I	CTNAG	7 cut(s)	190, 212, 390, 705, 779, 933, 1000
Hsp92II	CATG	3 cut(s)	22, 815, 992
HspAI	GCGC	2 cut(s)	200, 972
Ksp22I	TGATCA	1 cut(s)	1063
LmnI	GCTCC	5 cut(s)	34, 76, 230, 512, 596
Lsp1109I	GCAGC	7 cut(s)	234, 277, 280, 665, 961, 963, 991
LweI	GCATC	2 cut(s)	198, 530
MaeI	CTAG	7 cut(s)	45, 80, 84, 219, 672, 800, 807
MaeIII	GTNAC	5 cut(s)	307, 433, 667, 693, 821
MboII	GAAGA	1 cut(s)	177
MflI	RGATCY	2 cut(s)	96, 382
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	2 cut(s)	495, 572
MluCI	AATT	5 cut(s)	237, 618, 827, 853, 865
MluNI	TGGCCA	2 cut(s)	495, 572
MlyI	GAGTC	2 cut(s)	358, 359
MmeI	TCCRAC	1 cut(s)	1052
Mox20I	TGGCCA	2 cut(s)	495, 572
MscI	TGGCCA	2 cut(s)	495, 572
MseI	TTAA	3 cut(s)	761, 846, 881
MslI	CAYNNNNRTG	3 cut(s)	23, 105, 552
Msp20I	TGGCCA	2 cut(s)	495, 572
MspA1I	CMGCKG	1 cut(s)	1004
MspCI	CTTAAG	1 cut(s)	760
MspR9I	CCNGG	1 cut(s)	1104
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	85, 208, 457, 1013
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	22, 815, 992
NlaIV	GGNNCC	2 cut(s)	514, 603
NmeAIII	GCCGAG	1 cut(s)	1006
NmuCI	GTSAC	2 cut(s)	693, 821
NruI	TCGCGA	1 cut(s)	159
PagI	TCATGA	2 cut(s)	811, 988
PceI	AGGCCT	2 cut(s)	777, 798
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	2 cut(s)	19, 1034
PfoI	TCCNGGA	1 cut(s)	1102
PkrI	GCNGC	8 cut(s)	224, 292, 295, 655, 953, 976, 979, 1006
PleI	GAGTC	2 cut(s)	357, 359
PpsI	GAGTC	2 cut(s)	357, 359
PpuMI	RGGWCCY	1 cut(s)	601
PshAI	GACNNNNGTC	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	1102
PspGI	CCWGG	1 cut(s)	1102
PspN4I	GGNNCC	2 cut(s)	514, 603
PspPI	GGNCC	3 cut(s)	417, 458, 601
PspPPI	RGGWCCY	1 cut(s)	601
PstI	CTGCAG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	96, 382
PvuII	CAGCTG	1 cut(s)	1004
RruI	TCGCGA	1 cut(s)	159
RsaI	GTAC	3 cut(s)	11, 646, 927
RsaNI	GTAC	3 cut(s)	10, 645, 926
RseI	CAYNNNNRTG	3 cut(s)	23, 105, 552
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	761, 846, 881
SatI	GCNGC	8 cut(s)	223, 291, 294, 654, 952, 975, 978, 1005
Sau96I	GGNCC	3 cut(s)	417, 458, 601
SchI	GAGTC	2 cut(s)	358, 359
ScrFI	CCNGG	1 cut(s)	1104
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	2 cut(s)	198, 530
SfcI	CTRYAG	2 cut(s)	92, 891
SinI	GGWCC	2 cut(s)	417, 601
SmiMI	CAYNNNNRTG	3 cut(s)	23, 105, 552
SmlI	CTYRAG	3 cut(s)	648, 760, 1056
SmoI	CTYRAG	3 cut(s)	648, 760, 1056
SpeI	ACTAGT	3 cut(s)	44, 671, 806
Sse9I	AATT	5 cut(s)	237, 618, 827, 853, 865
SseBI	AGGCCT	2 cut(s)	777, 798
SsiI	CCGC	1 cut(s)	977
SspMI	CTAG	7 cut(s)	45, 80, 84, 219, 672, 800, 807
SstI	GAGCTC	1 cut(s)	140
StuI	AGGCCT	2 cut(s)	777, 798
StyD4I	CCNGG	1 cut(s)	1102
TaaI	ACNGT	5 cut(s)	286, 414, 667, 930, 1033
TaqI	TCGA	3 cut(s)	206, 550, 615
TasI	AATT	5 cut(s)	237, 618, 827, 853, 865
TatI	WGTACW	2 cut(s)	644, 925
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	761, 846, 881
Tru9I	TTAA	3 cut(s)	761, 846, 881
TseFI	GTSAC	2 cut(s)	693, 821
TseI	GCWGC	7 cut(s)	222, 290, 293, 653, 951, 974, 1004
Tsp45I	GTSAC	2 cut(s)	693, 821
Van91I	CCANNNNNTGG	2 cut(s)	19, 1034
Vha464I	CTTAAG	1 cut(s)	760
VpaK11BI	GGWCC	2 cut(s)	417, 601
XapI	RAATTY	1 cut(s)	865
XspI	CTAG	7 cut(s)	45, 80, 84, 219, 672, 800, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.