Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003120

Physical Location & Seq

Genomic Coordinates Reverse (-)

2574908 .. 2576996

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATACTGCTAGTAAGAGCTGGGAGCAGAAGTCACTGGTGGGGGAGATCATTGAAGGGATGGAGCTAGCACAACAGTTAAGGCTGAGTCTGAATGCAACATCAGCTTCATCAGAAAACAGGGAATTTTTAGTGCAGAGGATATTGACCTCATACGAAAAGGCCCTCTTACTACTGCAGTTGAGTGGCTCGCCTCAGACATCTCAATCGGCTGTGCTTCAGGATTTTCGTATGTCTGCCAACACAAGTCCTTGTGGTGATGACTATAACCACATGAGTTTCAAGGATCATCAGGACCTGCAAGAAATCTCCAAAAAGAGAAAGAGCATGGCCAAATGGACTGACCATGTCATAAGGGTTAGCTCTGAGAATGGGATTGAAGGATCTCAGGAAGACGGCCACAGCTGGAGAAAATATGGGCAGAAAGATATTCTAGGAGCCAAATATCCTAGAAGCTATTATAGATGCACCTTTAGGAACACACAAAGCTGCTGGGCTACAAAGCAAGTGCAGAGAGCAGATGAAGACCCAACCATATTTGAAATCACATACAAAGGAAAGCATACCTGCTCTCATGGCAGCAATTCAGTTCCACCACCACCATCACCAGAACAGCAAGAGCAAAAAAGACACAAGCGCGAGAACGTTTCTGAACCACAGCAGTCTCAAGTGACTCAAATGAGCTTTCCAACTAATCTGAGGGTCGACACTGAGAATTTGGAAGACAAAGAGATGATGGAATCTCCATTCTCTTTTACTTCGACTTCATTTGGATGCATGCCGAGTGGAGATGACTTCCTATCTTCAATGTTTGATAATGAGAATTTCTTTGGCAATTTCTCTCAACCTTTGCTATCTCCAGCTGCAGGCGAATCAAATTACTACTTGGCACCACCAAGCCAAATGAGAAACATTGCAGTAAATGAGCAACTTTCAGGATCTGATCTCACTGAGATAATCTCAGCCACCAATTCCAGAACCAATTCTCCAATCCCAGACATGGATTTCCCATTGGATCTAGTGGAACTCGACCCCAATTTCCCATTTGATACTCCAGGATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 WRKY

Protein Analysis

356

Amino Acids

40.09

Weight (kDa)

4.96

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	131 - 190	3.4e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11070 AT4G11070 AT4G23810
fragaria_vesca	FvH4_5g04370 FvH4_7g31050
malus_domestica	MD01G1215300.v1.1 MD06G1104100.v1.1 MD07G1285200.v1.1 MD07G1285400.v1.1 MD14G1123000.v1.1
prunus_persica	Prupe.2G307400_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1 Prupe.5G117000_v2.0.a1
pyrus_communis	pycom01g22600 pycom06g09890 pycom07g25900
rosa_chinensis	RchiOBHm_Chr1g0380121 RchiOBHm_Chr7g0195191
rosa_laevigata	RLG00000004139 RLG00000026329
rosa_multiflora	Rmu_sc0001232.1_g000014 Rmu_sc0002381.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260680 Rroxscaffold_4G00279660
rosa_rugosa	Rorug01G0417600 Rorug07G0021500
rosa_samantha	Rh1AG442800 Rh1BG397700 Rh1CG411200 Rh1DG428500 Rh7AG148800 Rh7BG150100 Rh7CG153600 Rh7DG150000
rosa_wichuraiana	Rw1G038450 Rw7G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	306, 575
AccB1I	GGYRCC	1 cut(s)	889
AccI	GTMKAC	1 cut(s)	705
AccII	CGCG	1 cut(s)	639
AclI	AACGTT	1 cut(s)	645
AclWI	GGATC	4 cut(s)	294, 391, 946, 1023
AcoI	YGGCCR	2 cut(s)	330, 397
AcsI	RAATTY	3 cut(s)	125, 715, 823
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	866, 1000
AgsI	TTSAA	5 cut(s)	56, 283, 380, 542, 807
AjnI	CCWGG	1 cut(s)	1054
AloI	GAACNNNNNNTCC	2 cut(s)	970, 1002
AluBI	AGCT	9 cut(s)	21, 67, 107, 363, 405, 456, 489, 684, 863
AluI	AGCT	9 cut(s)	21, 67, 107, 363, 405, 456, 489, 684, 863
Alw26I	GTCTC	1 cut(s)	669
AlwI	GGATC	4 cut(s)	294, 391, 946, 1023
AlwNI	CAGNNNCTG	2 cut(s)	298, 941
AoxI	GGCC	3 cut(s)	162, 330, 397
ApeKI	GCWGC	3 cut(s)	489, 579, 863
ApoI	RAATTY	3 cut(s)	125, 715, 823
Asp700I	GAANNNNTTC	1 cut(s)	982
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	163, 295
AsuHPI	GGTGA	2 cut(s)	269, 597
AsuNHI	GCTAGC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	889
BbsI	GAAGAC	3 cut(s)	399, 531, 729
BbvI	GCAGC	3 cut(s)	476, 591, 850
BccI	CCATC	3 cut(s)	55, 610, 730
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	1056
BcoDI	GTCTC	1 cut(s)	669
BfaI	CTAG	5 cut(s)	12, 68, 434, 450, 1019
BfmI	CTRYAG	2 cut(s)	176, 864
BfuAI	ACCTGC	2 cut(s)	306, 575
BisI	GCNGC	3 cut(s)	490, 580, 864
BlsI	GCNGC	3 cut(s)	491, 581, 865
Bme1390I	CCNGG	1 cut(s)	1056
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	163, 295
BmiI	GGNNCC	2 cut(s)	439, 891
BmrFI	CCNGG	1 cut(s)	1056
BmsI	GCATC	2 cut(s)	455, 764
BmtI	GCTAGC	1 cut(s)	71
BpiI	GAAGAC	3 cut(s)	399, 531, 729
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpmI	CTGGAG	3 cut(s)	427, 843, 1038
BpuEI	CTTGAG	1 cut(s)	651
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 970, 1000
Bsc4I	CCNNNNNNNGG	2 cut(s)	866, 1000
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	912
BseBI	CCWGG	1 cut(s)	1056
BseGI	GGATG	2 cut(s)	66, 779
BseLI	CCNNNNNNNGG	2 cut(s)	866, 1000
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	8 cut(s)	77, 209, 357, 401, 689, 702, 942, 975
BseNI	ACTGG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	476, 591, 850
BseYI	CCCAGC	2 cut(s)	21, 492
BsgI	GTGCAG	2 cut(s)	155, 530
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	164, 332, 399
BshNI	GGYRCC	1 cut(s)	889
BslI	CCNNNNNNNGG	2 cut(s)	866, 1000
BsmAI	GTCTC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	164, 332, 399
Bsp143I	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
BspANI	GGCC	3 cut(s)	164, 332, 399
BspCNI	CTCAG	8 cut(s)	78, 208, 358, 400, 690, 703, 943, 974
BspFNI	CGCG	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	439, 891
BspMAI	CTGCAG	2 cut(s)	180, 868
BspMI	ACCTGC	2 cut(s)	306, 575
BspOI	GCTAGC	1 cut(s)	71
BspPI	GGATC	4 cut(s)	294, 391, 946, 1023
BspT107I	GGYRCC	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	42
BssMI	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	1 cut(s)	78
BstC8I	GCNNGC	4 cut(s)	69, 191, 779, 868
BstDEI	CTNAG	8 cut(s)	86, 195, 366, 387, 698, 711, 951, 961
BstF5I	GGATG	2 cut(s)	66, 779
BstFNI	CGCG	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	6 cut(s)	51, 289, 386, 941, 946, 1018
BstMAI	GTCTC	1 cut(s)	669
BstMBI	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 576
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	2 cut(s)	176, 864
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	476, 591, 850
BstV2I	GAAGAC	3 cut(s)	399, 531, 729
BstX2I	RGATCY	3 cut(s)	383, 938, 1015
BstYI	RGATCY	3 cut(s)	383, 938, 1015
BsuRI	GGCC	3 cut(s)	164, 332, 399
BtsCI	GGATG	2 cut(s)	66, 779
BtsIMutI	CAGTG	3 cut(s)	35, 708, 948
BveI	ACCTGC	2 cut(s)	306, 575
Cac8I	GCNNGC	4 cut(s)	69, 191, 779, 868
CaiI	CAGNNNCTG	2 cut(s)	298, 941
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	163, 295
CviAII	CATG	6 cut(s)	274, 328, 347, 575, 778, 1000
DdeI	CTNAG	8 cut(s)	86, 195, 366, 387, 698, 711, 951, 961
DpnI	GATC	6 cut(s)	50, 288, 385, 940, 945, 1017
DpnII	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
EaeI	YGGCCR	2 cut(s)	330, 397
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	163, 295
EcoRII	CCWGG	1 cut(s)	1054
EcoT22I	ATGCAT	1 cut(s)	779
FaeI	CATG	6 cut(s)	277, 331, 350, 578, 781, 1003
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	6 cut(s)	273, 327, 346, 574, 777, 999
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	490, 580, 864
FokI	GGATG	2 cut(s)	73, 786
Fsp4HI	GCNGC	3 cut(s)	490, 580, 864
FspBI	CTAG	5 cut(s)	12, 68, 434, 450, 1019
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	3 cut(s)	490, 580, 864
GsaI	CCCAGC	2 cut(s)	25, 496
GsuI	CTGGAG	3 cut(s)	427, 843, 1038
HaeIII	GGCC	3 cut(s)	164, 332, 399
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	6 cut(s)	277, 331, 350, 578, 781, 1003
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	4 cut(s)	88, 673, 740, 872
HphI	GGTGA	2 cut(s)	269, 597
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	8 cut(s)	93, 115, 198, 367, 652, 699, 943, 1067
Hpy188III	TCNNGA	5 cut(s)	221, 293, 389, 936, 975
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	2 cut(s)	50, 374
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	9 cut(s)	98, 136, 178, 301, 468, 511, 777, 866, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 576
HpyF3I	CTNAG	8 cut(s)	86, 195, 366, 387, 698, 711, 951, 961
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	6 cut(s)	277, 331, 350, 578, 781, 1003
HspAI	GCGC	1 cut(s)	637
Kzo9I	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
LmnI	GCTCC	3 cut(s)	25, 64, 437
Lsp1109I	GCAGC	3 cut(s)	476, 591, 850
LweI	GCATC	2 cut(s)	455, 764
MaeI	CTAG	5 cut(s)	12, 68, 434, 450, 1019
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	2 cut(s)	33, 670
MalI	GATC	6 cut(s)	50, 288, 385, 940, 945, 1017
MboI	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
MboII	GAAGA	4 cut(s)	404, 536, 734, 795
MflI	RGATCY	3 cut(s)	383, 938, 1015
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	9 cut(s)	125, 583, 715, 823, 835, 877, 970, 982, 1036
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	97, 667
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	5 cut(s)	132, 160, 176, 204, 693
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	982
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	772
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	405, 863
MspR9I	CCNGG	1 cut(s)	1056
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	1056
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	104, 576
NdeII	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	6 cut(s)	277, 331, 350, 578, 781, 1003
NlaIV	GGNNCC	2 cut(s)	439, 891
NmeAIII	GCCGAG	1 cut(s)	807
NmuCI	GTSAC	2 cut(s)	33, 670
NsiI	ATGCAT	1 cut(s)	779
NspI	RCATGY	1 cut(s)	781
PaeI	GCATGC	1 cut(s)	781
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	2 cut(s)	740, 872
PflFI	GACNNNGTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	1054
PkrI	GCNGC	3 cut(s)	491, 581, 865
PleI	GAGTC	2 cut(s)	96, 667
PpsI	GAGTC	2 cut(s)	96, 667
PpuMI	RGGWCCY	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	1054
PspFI	CCCAGC	2 cut(s)	21, 492
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	2 cut(s)	439, 891
PspPI	GGNCC	2 cut(s)	163, 295
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	2 cut(s)	180, 868
PstNI	CAGNNNCTG	2 cut(s)	298, 941
PsuI	RGATCY	3 cut(s)	383, 938, 1015
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	405, 863
RseI	CAYNNNNRTG	1 cut(s)	772
SalI	GTCGAC	1 cut(s)	704
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	3 cut(s)	490, 580, 864
Sau3AI	GATC	6 cut(s)	48, 286, 383, 938, 943, 1015
Sau96I	GGNCC	2 cut(s)	163, 295
SchI	GAGTC	2 cut(s)	97, 667
ScrFI	CCNGG	1 cut(s)	1056
SfaNI	GCATC	2 cut(s)	455, 764
SfcI	CTRYAG	2 cut(s)	176, 864
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
SphI	GCATGC	1 cut(s)	781
Sse9I	AATT	9 cut(s)	125, 583, 715, 823, 835, 877, 970, 982, 1036
SspMI	CTAG	5 cut(s)	12, 68, 434, 450, 1019
StyD4I	CCNGG	1 cut(s)	1054
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	705, 761, 1029
TasI	AATT	9 cut(s)	125, 583, 715, 823, 835, 877, 970, 982, 1036
TfiI	GAWTC	2 cut(s)	740, 872
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	3 cut(s)	42, 715, 955
TseFI	GTSAC	2 cut(s)	33, 670
TseI	GCWGC	3 cut(s)	489, 579, 863
Tsp45I	GTSAC	2 cut(s)	33, 670
TspDTI	ATGAA	3 cut(s)	99, 537, 756
TspRI	CASTG	3 cut(s)	42, 715, 955
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	125, 715, 823
XceI	RCATGY	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	5 cut(s)	12, 68, 434, 450, 1019
Zsp2I	ATGCAT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.