AT4G14805

Lipid transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005475
Physical Location & Seq
Reverse (-)
8502373 .. 8503199
827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14805.1

Sequence Viewer

Length: 660 bp
ATGGCGACCAAAATCACCGGCGTTTTCATCCTCATACTCACGATCACCTTCTCCTCCTCCTCCGCCGTAACCGCGACGCAGCAAGCACCTTCGTCTTCTCCACCGGTTCTGACTTGTACGGAGGAGCTCGTCATGTTCTCTCCTTGCCTTCCTTACGTCTCCTCTCCACCAAACAATATGTCAGAGACTCCGGATCCTATTTGCTGCTCGGTTTTTACCTCCTCCGTTCATTCTAGCACCGGAAACTGTCTCTGTTATCTTCTCCGGCAGCCGATGATCCTTGGATTCCCGTTGGATAGATCTAGATTGATTTCTCTTTCTCAGATCTGTACCGATCAGAATTCCGAAGAATCTTTCGAATCTCTCTGTTCGGTATCAGAGTCGCCGGAGCTTCCTCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTCCGGTAATAATGTTTCTGCCTCTCCTCAATCAGTCGACTTAGCACCGGAAGTTTCACCAAGCTCCGATCTATTCTCACCGGAAACAGCCACCCTAGCACCACCACCACCACCACCACCACTACCAGTTCTACAATACTTCTCAAGCGACTCTCTCAAGATCAGAAACTTCTGGTTTCCATCGACTATCATCATGACTTTTGCCACTTCTATTCTCGCTCGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

219

Amino Acids

23.55

Weight (kDa)

4.32

Isoelectric Point (pI)

85.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 24 - 115 8.5e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 468
AccII CGCG 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 3 cut(s) 63, 72, 398
AclWI GGATC 3 cut(s) 188, 201, 271
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 2 cut(s) 118, 331
AgeI ACCGGT 1 cut(s) 103
AluBI AGCT 3 cut(s) 127, 391, 495
AluI AGCT 3 cut(s) 127, 391, 495
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 3 cut(s) 163, 179, 254
AlwI GGATC 3 cut(s) 188, 201, 271
Aor13HI TCCGGA 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 79, 204, 268
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsiGI ACCGGT 1 cut(s) 103
AsuHPI GGTGA 4 cut(s) 7, 37, 480, 501
AsuII TTCGAA 1 cut(s) 357
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 91, 191, 280
BccI CCATC 1 cut(s) 619
BceAI ACGGC 1 cut(s) 50
BcoDI GTCTC 3 cut(s) 163, 179, 254
BfaI CTAG 3 cut(s) 234, 303, 527
BglII AGATCT 2 cut(s) 299, 324
BisI GCNGC 3 cut(s) 80, 205, 269
BlsI GCNGC 3 cut(s) 81, 206, 270
BmiI GGNNCC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 559, 572
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 6 cut(s) 103, 190, 239, 434, 478, 511
Bse118I RCCGGY 2 cut(s) 17, 103
Bse1I ACTGG 1 cut(s) 557
BseAI TCCGGA 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 7 cut(s) 43, 46, 49, 137, 151, 211, 447
BseXI GCAGC 3 cut(s) 91, 191, 280
Bsh1236I CGCG 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 9 cut(s) 18, 104, 191, 240, 265, 386, 435, 479, 512
BsmAI GTCTC 3 cut(s) 163, 179, 254
BsmBI CGTCTC 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
BspACI CCGC 3 cut(s) 63, 72, 398
BspCNI CTCAG 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 190
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 3 cut(s) 188, 201, 271
BspT104I TTCGAA 1 cut(s) 357
BsrFI RCCGGY 2 cut(s) 17, 103
BsrI ACTGG 1 cut(s) 557
BssAI RCCGGY 2 cut(s) 17, 103
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
BssT1I CCWWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 321, 472
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 8 cut(s) 45, 196, 279, 302, 327, 337, 502, 594
BstMAI GTCTC 3 cut(s) 163, 179, 254
BstMBI GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
BstMWI GCNNNNNNNGC 3 cut(s) 71, 397, 527
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 91, 191, 280
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 3 cut(s) 193, 299, 324
BstYI RGATCY 3 cut(s) 193, 299, 324
BtsCI GGATG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 84
CciI TCATGA 1 cut(s) 624
Cfr10I RCCGGY 2 cut(s) 17, 103
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 117, 330
CspAI ACCGGT 1 cut(s) 103
CviAII CATG 2 cut(s) 133, 625
CviJI RGCY 5 cut(s) 127, 271, 391, 495, 521
CviKI_1 RGCY 5 cut(s) 127, 271, 391, 495, 521
CviQI GTAC 2 cut(s) 117, 330
DdeI CTNAG 2 cut(s) 321, 472
DpnI GATC 8 cut(s) 44, 195, 278, 301, 326, 336, 501, 593
DpnII GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 2 cut(s) 136, 628
FaiI YATR 4 cut(s) 35, 134, 179, 626
FatI CATG 2 cut(s) 132, 624
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 3 cut(s) 80, 205, 269
FokI GGATG 1 cut(s) 14
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 80, 205, 269
FspBI CTAG 3 cut(s) 234, 303, 527
GluI GCNGC 3 cut(s) 80, 205, 269
HapII CCGG 9 cut(s) 18, 104, 191, 240, 265, 386, 435, 479, 512
HgaI GACGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 136, 628
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 6 cut(s) 187, 285, 350, 359, 380, 581
HpaII CCGG 9 cut(s) 18, 104, 191, 240, 265, 386, 435, 479, 512
HphI GGTGA 4 cut(s) 7, 37, 480, 501
Hpy166II GTNNAC 2 cut(s) 417, 469
Hpy188III TCNNGA 5 cut(s) 40, 191, 303, 589, 625
Hpy8I GTNNAC 2 cut(s) 417, 469
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 58, 99, 158
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 397, 527
HpyF3I CTNAG 2 cut(s) 321, 472
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 136, 628
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
LmnI GCTCC 3 cut(s) 124, 388, 500
Lsp1109I GCAGC 3 cut(s) 91, 191, 280
MaeI CTAG 3 cut(s) 234, 303, 527
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 67
MalI GATC 8 cut(s) 44, 195, 278, 301, 326, 336, 501, 593
MboI GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
MboII GAAGA 3 cut(s) 87, 251, 359
MflI RGATCY 3 cut(s) 193, 299, 324
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 340
MlyI GAGTC 3 cut(s) 181, 389, 575
MmeI TCCRAC 1 cut(s) 273
MroI TCCGGA 1 cut(s) 190
MspI CCGG 9 cut(s) 18, 104, 191, 240, 265, 386, 435, 479, 512
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 71, 397, 527
NdeII GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
NlaIII CATG 2 cut(s) 136, 628
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 357
PagI TCATGA 1 cut(s) 624
PfeI GAWTC 3 cut(s) 285, 350, 359
PinAI ACCGGT 1 cut(s) 103
PkrI GCNGC 3 cut(s) 81, 206, 270
PleI GAGTC 3 cut(s) 181, 388, 575
PpsI GAGTC 3 cut(s) 181, 388, 575
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 3 cut(s) 193, 299, 324
RsaI GTAC 2 cut(s) 118, 331
RsaNI GTAC 2 cut(s) 117, 330
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 467
SatI GCNGC 3 cut(s) 80, 205, 269
Sau3AI GATC 8 cut(s) 42, 193, 276, 299, 324, 334, 499, 591
SchI GAGTC 3 cut(s) 181, 389, 575
SduI GDGCHC 1 cut(s) 129
SetI ASST 7 cut(s) 50, 91, 129, 159, 221, 393, 497
SfuI TTCGAA 1 cut(s) 357
SgrAI CRCCGGYG 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 574, 587
SmoI CTYRAG 2 cut(s) 574, 587
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 63, 72, 398
SspMI CTAG 3 cut(s) 234, 303, 527
SstI GAGCTC 1 cut(s) 129
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 357, 468, 614
TasI AATT 1 cut(s) 340
TfiI GAWTC 3 cut(s) 285, 350, 359
TseI GCWGC 3 cut(s) 79, 204, 268
TspDTI ATGAA 2 cut(s) 16, 218
TspGWI ACGGA 3 cut(s) 134, 214, 414
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 3 cut(s) 234, 303, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.