Rh4DG193900

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005475
Physical Location & Seq
Reverse (-)
38031413 .. 38032266
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG193900.1

Sequence Viewer

Length: 648 bp
ATGAGCACCACCGCCACCGCCACCTCTTTGCACTCCTCGTCTCTCATGGCCGTCCTCCTCCTCGCCTCCTTGTTCGTCACTCTCGGAGCCGCAAAGTCAGCAAAAGAATCGCCGCCGTCCGCTTGCGCCGACGAGCTCGTCCGGTTCTCGCCGTGCCTGTCGTACGTGGCGTCGCCGCCGAACAACCTCTCCGACTCACCGGCGTCCAAGTGCTGCGACACGTTCTCGTCGGCGGCGGATTCCGGCAGCGCCGTTTGCCTGTGCTACCTGGTCCAGGATCCTCCGATGCTCGGCTTTCCGGTGACCGTCGCTCGCGTCCTCTCTCTCTCTTCCTTTTGCCGTCGCCGGAACTCCACTGCTGCTTCTGCTTCTCTTCAGTCTCTCTGCTCAGAGTCGCCGGAACTCCCTCCTCTCCGCAACACCACGATTTCGGTGATTTCAGGTCCTCCTCCTTCCGGTTATGAAACTGCTTCATCTCCTTCGCCAAAACCAACTAACAAGTCAAGCACAAAACCAAGCTTCTCAACTCCACCGAGCTCAGCAGTAGAACCAGCAAGAGTGTCGTCGTCGGCAGCGGCCATGAAACGAATTTTCAAGAACAATACTTCCTGGTTTCTACCTGCCATATCGATTTTCATACTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

215

Amino Acids

22.27

Weight (kDa)

8.84

Isoelectric Point (pI)

71.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 31 - 119 1.5e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 628
AccII CGCG 1 cut(s) 315
AclWI GGATC 2 cut(s) 272, 285
AcoI YGGCCR 2 cut(s) 48, 576
AcsI RAATTY 1 cut(s) 588
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 2 cut(s) 170, 203
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 274, 290, 455
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 595
AjnI CCWGG 3 cut(s) 267, 273, 608
AloI GAACNNNNNNTCC 4 cut(s) 173, 205, 590, 622
AluBI AGCT 3 cut(s) 136, 519, 537
AluI AGCT 3 cut(s) 136, 519, 537
Alw21I GWGCWC 3 cut(s) 8, 138, 539
Alw26I GTCTC 2 cut(s) 45, 384
AlwI GGATC 2 cut(s) 272, 285
AoxI GGCC 2 cut(s) 48, 576
ApeKI GCWGC 4 cut(s) 213, 246, 359, 572
ApoI RAATTY 1 cut(s) 588
AspLEI GCGC 2 cut(s) 128, 251
AspS9I GGNCC 2 cut(s) 271, 443
AsuHPI GGTGA 3 cut(s) 189, 313, 445
AvaII GGWCC 2 cut(s) 271, 443
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 2 cut(s) 138, 539
Bbv12I GWGCWC 3 cut(s) 8, 138, 539
BbvI GCAGC 4 cut(s) 200, 258, 346, 584
BceAI ACGGC 5 cut(s) 35, 100, 136, 236, 324
BcgI CGANNNNNNTGC 4 cut(s) 90, 124, 543, 577
BciT130I CCWGG 3 cut(s) 269, 275, 610
BcoDI GTCTC 2 cut(s) 45, 384
BfoI RGCGCY 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 628
BisI GCNGC 9 cut(s) 90, 113, 176, 214, 234, 247, 360, 573, 576
BlpI GCTNAGC 1 cut(s) 538
BlsI GCNGC 9 cut(s) 91, 114, 177, 215, 235, 248, 361, 574, 577
Bme1390I CCNGG 3 cut(s) 269, 275, 610
Bme18I GGWCC 2 cut(s) 271, 443
BmgT120I GGNCC 2 cut(s) 271, 443
BmiI GGNNCC 2 cut(s) 88, 279
BmrFI CCNGG 3 cut(s) 269, 275, 610
BmsI GCATC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 538
Bsa29I ATCGAT 1 cut(s) 629
BsaAI YACGTR 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 170, 203
BsaWI WCCGGW 3 cut(s) 141, 298, 455
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 290, 455
Bse118I RCCGGY 1 cut(s) 199
BseBI CCWGG 3 cut(s) 269, 275, 610
BseCI ATCGAT 1 cut(s) 629
BseLI CCNNNNNNNGG 3 cut(s) 274, 290, 455
BseMII CTCAG 2 cut(s) 402, 552
BseRI GAGGAG 5 cut(s) 25, 47, 50, 399, 438
BseXI GCAGC 4 cut(s) 200, 258, 346, 584
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 50, 578
BshVI ATCGAT 1 cut(s) 629
BsiHKAI GWGCWC 3 cut(s) 8, 138, 539
BsiSI CCGG 7 cut(s) 142, 200, 243, 299, 346, 398, 456
BsiWI CGTACG 1 cut(s) 162
BslI CCNNNNNNNGG 3 cut(s) 274, 290, 455
BsmAI GTCTC 2 cut(s) 45, 384
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 50, 578
Bsp1286I GDGCHC 3 cut(s) 8, 138, 539
Bsp143I GATC 1 cut(s) 277
Bsp1720I GCTNAGC 1 cut(s) 538
BspANI GGCC 2 cut(s) 50, 578
BspCNI CTCAG 2 cut(s) 401, 551
BspDI ATCGAT 1 cut(s) 629
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 88, 279
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 2 cut(s) 272, 285
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 1 cut(s) 277
BssNI GRCGYC 2 cut(s) 170, 203
Bst2UI CCWGG 3 cut(s) 269, 275, 610
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 2 cut(s) 334, 378
BstACI GRCGYC 2 cut(s) 170, 203
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 124, 313
BstDEI CTNAG 2 cut(s) 388, 538
BstEII GGTNACC 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 2 cut(s) 128, 251
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 45, 384
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 98, 255, 365
BstNI CCWGG 3 cut(s) 269, 275, 610
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 267, 273, 608
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 4 cut(s) 200, 258, 346, 584
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 629
BsuRI GGCC 2 cut(s) 50, 578
BsuTUI ATCGAT 1 cut(s) 629
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 124, 313
CfoI GCGC 2 cut(s) 128, 251
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 271, 443
ClaI ATCGAT 1 cut(s) 629
CseI GACGC 3 cut(s) 159, 192, 304
CsiI ACCWGGT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 46, 580
CviJI RGCY 7 cut(s) 50, 89, 136, 294, 519, 537, 578
CviKI_1 RGCY 7 cut(s) 50, 89, 136, 294, 519, 537, 578
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 388, 538
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 48, 576
Eam1104I CTCTTC 2 cut(s) 334, 378
EarI CTCTTC 2 cut(s) 334, 378
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 2 cut(s) 136, 537
Eco24I GRGCYC 2 cut(s) 138, 539
Eco47I GGWCC 2 cut(s) 271, 443
Eco53kI GAGCTC 2 cut(s) 136, 537
Eco57I CTGAAG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 301
EcoICRI GAGCTC 2 cut(s) 136, 537
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 3 cut(s) 267, 273, 608
EcoT38I GRGCYC 2 cut(s) 138, 539
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 49, 583
FaiI YATR 5 cut(s) 47, 462, 581, 626, 638
FatI CATG 2 cut(s) 45, 579
Fnu4HI GCNGC 9 cut(s) 90, 113, 176, 214, 234, 247, 360, 573, 576
FriOI GRGCYC 2 cut(s) 138, 539
Fsp4HI GCNGC 9 cut(s) 90, 113, 176, 214, 234, 247, 360, 573, 576
GlaI GCGC 2 cut(s) 127, 250
GluI GCNGC 9 cut(s) 90, 113, 176, 214, 234, 247, 360, 573, 576
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 2 cut(s) 50, 578
HapII CCGG 7 cut(s) 142, 200, 243, 299, 346, 398, 456
HgaI GACGC 3 cut(s) 159, 192, 304
HhaI GCGC 2 cut(s) 128, 251
Hin1I GRCGYC 2 cut(s) 170, 203
Hin1II CATG 2 cut(s) 49, 583
Hin6I GCGC 2 cut(s) 126, 249
HinP1I GCGC 2 cut(s) 126, 249
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 4 cut(s) 107, 194, 239, 392
HpaII CCGG 7 cut(s) 142, 200, 243, 299, 346, 398, 456
HphI GGTGA 3 cut(s) 189, 313, 445
Hpy188I TCNGA 5 cut(s) 86, 193, 285, 391, 647
Hpy188III TCNNGA 1 cut(s) 595
Hpy99I CGWCG 7 cut(s) 134, 175, 232, 311, 345, 568, 571
HpyAV CCTTC 2 cut(s) 462, 489
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 2 cut(s) 165, 221
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 255, 365
HpyF3I CTNAG 2 cut(s) 388, 538
HpySE526I ACGT 2 cut(s) 165, 221
Hsp92I GRCGYC 2 cut(s) 170, 203
Hsp92II CATG 2 cut(s) 49, 583
HspAI GCGC 2 cut(s) 126, 249
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 4 cut(s) 200, 258, 346, 584
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 267
MaeII ACGT 2 cut(s) 165, 221
MaeIII GTNAC 2 cut(s) 76, 301
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 2 cut(s) 321, 365
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 3 cut(s) 8, 138, 539
MluCI AATT 1 cut(s) 588
MlyI GAGTC 2 cut(s) 188, 401
MmeI TCCRAC 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 7 cut(s) 142, 200, 243, 299, 346, 398, 456
MspR9I CCNGG 3 cut(s) 269, 275, 610
MvaI CCWGG 3 cut(s) 269, 275, 610
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 98, 255, 365
NdeII GATC 1 cut(s) 277
NlaIII CATG 2 cut(s) 49, 583
NlaIV GGNNCC 2 cut(s) 88, 279
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 76, 301
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PfeI GAWTC 2 cut(s) 107, 239
Pfl23II CGTACG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 9 cut(s) 91, 114, 177, 215, 235, 248, 361, 574, 577
PleI GAGTC 2 cut(s) 188, 400
PpsI GAGTC 2 cut(s) 188, 400
Ppu21I YACGTR 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 443
Psp124BI GAGCTC 2 cut(s) 138, 539
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 267, 273, 608
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 3 cut(s) 267, 273, 608
PspLI CGTACG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 88, 279
PspPI GGNCC 2 cut(s) 271, 443
PspPPI RGGWCCY 1 cut(s) 443
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacI GAGCTC 2 cut(s) 138, 539
SatI GCNGC 9 cut(s) 90, 113, 176, 214, 234, 247, 360, 573, 576
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 271, 443
SchI GAGTC 2 cut(s) 188, 401
ScrFI CCNGG 3 cut(s) 269, 275, 610
SduI GDGCHC 3 cut(s) 8, 138, 539
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 1 cut(s) 276
SgrAI CRCCGGYG 1 cut(s) 199
SinI GGWCC 2 cut(s) 271, 443
Sse9I AATT 1 cut(s) 588
SstI GAGCTC 2 cut(s) 138, 539
StyD4I CCNGG 3 cut(s) 267, 273, 608
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 2 cut(s) 168, 224
TaqI TCGA 1 cut(s) 629
TasI AATT 1 cut(s) 588
TauI GCSGC 5 cut(s) 92, 115, 178, 236, 578
TfiI GAWTC 2 cut(s) 107, 239
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 76, 301
TseI GCWGC 4 cut(s) 213, 246, 359, 572
Tsp45I GTSAC 2 cut(s) 76, 301
TspDTI ATGAA 4 cut(s) 462, 477, 596, 625
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 2 cut(s) 271, 443
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.