FvH4_3g08061

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005475
Physical Location & Seq
Forward (+)
4747693 .. 4748970
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08061.t1

Sequence Viewer

Length: 390 bp
ATGAGGAGCTTGATGGAGACATTGTTATTGGAGCAGAGGAGAGAGTGGCGTCTGGGTGGGATTGTGTTGGCGGGAAACCTTGATTTGGCGGGAGAGGAGGTAGCCGGAGATTCGCCGCCATCCTCTTGCACCGACGAGCTAGTCTGGTTCTCACCATGCCGCTTCTACGTGGCATCGCCGCTGAAAAACCTCTCCGACTCGTCGGCATCTAAGTGCTGCGACTCGTTCTCTTCGACGGAGGAGTCCGGCAGCGCCGTTTGCCTCTGCTACCTAGCTCATCTTTCATCTTCATTGAGACTGGGCAAGAGTGCTTCGGGGATGGGCTGGTTTCGTGCCGAGATTGATGATGGTTTAGGGTTTAGGAGGCCGTCAGGGAAGGTGAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

130

Amino Acids

13.88

Weight (kDa)

5.13

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 140, 241
AciI CCGC 5 cut(s) 71, 89, 116, 160, 179
AcyI GRCGYC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 85
AluBI AGCT 3 cut(s) 9, 139, 275
AluI AGCT 3 cut(s) 9, 139, 275
Alw26I GTCTC 2 cut(s) 11, 289
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 216, 249
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 144
BbvI GCAGC 2 cut(s) 203, 261
BccI CCATC 4 cut(s) 7, 127, 313, 341
BceAI ACGGC 2 cut(s) 239, 352
BcoDI GTCTC 2 cut(s) 11, 289
BfaI CTAG 3 cut(s) 140, 272, 388
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 5 cut(s) 116, 160, 179, 217, 250
BlsI GCNGC 5 cut(s) 117, 161, 180, 218, 251
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 182, 215
BmuI ACTGGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 49
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 119, 324
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 4 cut(s) 19, 52, 110, 254
BseXI GCAGC 2 cut(s) 203, 261
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 105, 246
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 11, 289
BsnI GGCC 1 cut(s) 367
BspACI CCGC 5 cut(s) 71, 89, 116, 160, 179
BspANI GGCC 1 cut(s) 367
BsrI ACTGG 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 119, 324
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstMAI GTCTC 2 cut(s) 11, 289
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 203, 261
BsuRI GGCC 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 119, 324
CfoI GCGC 1 cut(s) 254
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 156
CviJI RGCY 6 cut(s) 9, 104, 139, 275, 324, 367
CviKI_1 RGCY 6 cut(s) 9, 104, 139, 275, 324, 367
DdeI CTNAG 1 cut(s) 210
DrdI GACNNNNNNGTC 2 cut(s) 140, 241
DseDI GACNNNNNNGTC 2 cut(s) 140, 241
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
FaeI CATG 1 cut(s) 159
FaiI YATR 1 cut(s) 157
FatI CATG 1 cut(s) 155
FauI CCCGC 2 cut(s) 64, 82
Fnu4HI GCNGC 5 cut(s) 116, 160, 179, 217, 250
FokI GGATG 2 cut(s) 106, 331
Fsp4HI GCNGC 5 cut(s) 116, 160, 179, 217, 250
FspBI CTAG 3 cut(s) 140, 272, 388
GlaI GCGC 1 cut(s) 253
GluI GCNGC 5 cut(s) 116, 160, 179, 217, 250
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 105, 246
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 1 cut(s) 159
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 4 cut(s) 110, 197, 221, 242
HpaII CCGG 2 cut(s) 105, 246
HphI GGTGA 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 196
Hpy99I CGWCG 3 cut(s) 137, 205, 238
HpyAV CCTTC 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 1 cut(s) 159
HspAI GCGC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 6, 31
LpnPI CCDG 7 cut(s) 38, 118, 130, 259, 284, 310, 357
Lsp1109I GCAGC 2 cut(s) 203, 261
LweI GCATC 2 cut(s) 182, 215
MaeI CTAG 3 cut(s) 140, 272, 388
MaeII ACGT 1 cut(s) 168
MboII GAAGA 2 cut(s) 222, 279
MlyI GAGTC 3 cut(s) 191, 215, 251
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 8 cut(s) 30, 88, 91, 133, 200, 232, 272, 357
MslI CAYNNNNRTG 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 2 cut(s) 105, 246
MwoI GCNNNNNNNGC 1 cut(s) 258
NlaIII CATG 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 117, 161, 180, 218, 251
PleI GAGTC 3 cut(s) 191, 215, 250
PpsI GAGTC 3 cut(s) 191, 215, 250
Ppu21I YACGTR 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 211
SatI GCNGC 5 cut(s) 116, 160, 179, 217, 250
SchI GAGTC 3 cut(s) 191, 215, 251
SetI ASST 9 cut(s) 11, 81, 102, 141, 171, 192, 273, 277, 381
SfaNI GCATC 2 cut(s) 182, 215
SmiMI CAYNNNNRTG 1 cut(s) 211
SsiI CCGC 5 cut(s) 71, 89, 116, 160, 179
SspMI CTAG 3 cut(s) 140, 272, 388
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 233
TauI GCSGC 3 cut(s) 118, 162, 181
TfiI GAWTC 1 cut(s) 110
TseI GCWGC 2 cut(s) 216, 249
TspDTI ATGAA 2 cut(s) 273, 279
TspGWI ACGGA 1 cut(s) 251
XspI CTAG 3 cut(s) 140, 272, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.