Rh4CG207300

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005475
Physical Location & Seq
Reverse (-)
43552853 .. 43554110
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG207300.1

Sequence Viewer

Length: 687 bp
ATGAGCACCACCGCCACCTATCTGCGCTCGTCATCTCTCACGGCCGTCCTCCTCCTTGCTTCCTTGTTCGTCACTCTCAGCACCGCAAAGTCAGCAAAAGAATCGCCGCAGTCTGCTTGCGCCGACAAGTTCATCCGGTTCTCGCCGTGCTTGTCGTACGTGGCGTCGCCGCCGAACAACCACTCCAACTCTGTAGAGTCCGGGAGCTGCGACACGTTCTTGTCGGCGGAGGAGTCTGGCCACGCCTTTTGCCTCTGCTACCTGGTCCAAGATCCTCCGATGCTAGGCTTTCCGATGATCGTTGCTCGCGTCCTCTCTCTATCTTCCGTTTGTTGTAGCCGGAACTCCACCATTGCTTCTACTTCTCTTCAGTCTCTCTGCTCAGAGTCGCTGGAACTCCCTCCTCTCCGCAACATCACAATTTTGGTGATTTCGGGACCTCCTCCTTCTGGTTATGAAACGGCCAAAACCAACAAACAAGTCAAGCACAAAACCAAGCTTCTCAACTCCACCGAGCTCAGCAGTAGAACCAGCAAGAATGCCATCGTCTTCAGAGGCCATGAAACGAATTTTCAAGAACAACACTTCTTGGTTTCTACCTGCCATATCGGTTTTCATACTCATCTAATCATAGAACTTCAACCCACGAGTTCGGTTTTTCTCACTCTTGGTGGTATATTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

228

Amino Acids

24.63

Weight (kDa)

8.39

Isoelectric Point (pI)

63.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 24 - 116 5.7e-07 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 608
AccII CGCG 1 cut(s) 309
AciI CCGC 6 cut(s) 12, 84, 107, 170, 227, 409
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 3 cut(s) 42, 238, 462
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 2 cut(s) 353, 535
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 284, 449
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 2 cut(s) 575, 641
AjnI CCWGG 1 cut(s) 261
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 207, 499, 517
AluI AGCT 3 cut(s) 207, 499, 517
Alw21I GWGCWC 2 cut(s) 8, 519
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 266
AoxI GGCC 4 cut(s) 42, 238, 462, 556
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 568
AspLEI GCGC 2 cut(s) 27, 122
AspS9I GGNCC 2 cut(s) 265, 437
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 439
AvaII GGWCC 2 cut(s) 265, 437
BalI TGGCCA 1 cut(s) 240
BanII GRGCYC 1 cut(s) 519
BauI CACGAG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 541
Bbv12I GWGCWC 2 cut(s) 8, 519
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 551
BceAI ACGGC 4 cut(s) 29, 57, 130, 477
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 3 cut(s) 107, 170, 208
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 3 cut(s) 108, 171, 209
Bme1390I CCNGG 2 cut(s) 202, 263
Bme18I GGWCC 2 cut(s) 265, 437
BmgT120I GGNCC 2 cut(s) 265, 437
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 202, 263
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 541
Bpu1102I GCTNAGC 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 449
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 284, 449
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 3 cut(s) 91, 396, 532
BseRI GAGGAG 4 cut(s) 41, 245, 393, 432
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 4 cut(s) 44, 240, 464, 558
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 8, 519
BsiSI CCGG 3 cut(s) 136, 201, 340
BsiWI CGTACG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 284, 449
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 4 cut(s) 44, 240, 464, 558
Bsp1286I GDGCHC 2 cut(s) 8, 519
Bsp143I GATC 2 cut(s) 271, 297
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 6 cut(s) 12, 84, 107, 170, 227, 409
BspANI GGCC 4 cut(s) 44, 240, 464, 558
BspCNI CTCAG 3 cut(s) 90, 395, 531
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 351
BssMI GATC 2 cut(s) 271, 297
BssNI GRCGYC 1 cut(s) 164
BssSI CACGAG 1 cut(s) 646
Bst2BI CACGAG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 118, 307
BstDEI CTNAG 3 cut(s) 77, 382, 518
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 2 cut(s) 27, 122
BstKTI GATC 2 cut(s) 274, 300
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 271, 297
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 200, 261
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 4 cut(s) 44, 240, 464, 558
BtsCI GGATG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 2 cut(s) 118, 307
CfoI GCGC 2 cut(s) 27, 122
Cfr13I GGNCC 2 cut(s) 265, 437
CseI GACGC 2 cut(s) 153, 298
CsiI ACCWGGT 1 cut(s) 261
Csp6I GTAC 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 1 cut(s) 560
CviJI RGCY 9 cut(s) 44, 207, 240, 288, 339, 464, 499, 517, 558
CviKI_1 RGCY 9 cut(s) 44, 207, 240, 288, 339, 464, 499, 517, 558
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 77, 382, 518
DpnI GATC 2 cut(s) 273, 299
DpnII GATC 2 cut(s) 271, 297
EaeI YGGCCR 3 cut(s) 42, 238, 462
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 517
EclXI CGGCCG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 265, 437
Eco52I CGGCCG 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 2 cut(s) 353, 535
EcoICRI GAGCTC 1 cut(s) 517
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 519
FaeI CATG 1 cut(s) 563
FaiI YATR 6 cut(s) 456, 561, 606, 618, 632, 677
FaqI GGGAC 1 cut(s) 450
FatI CATG 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 107, 170, 208
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 3 cut(s) 107, 170, 208
FspBI CTAG 1 cut(s) 284
GlaI GCGC 2 cut(s) 26, 121
GluI GCNGC 3 cut(s) 107, 170, 208
HaeIII GGCC 4 cut(s) 44, 240, 464, 558
HapII CCGG 3 cut(s) 136, 201, 340
HgaI GACGC 2 cut(s) 153, 298
HhaI GCGC 2 cut(s) 27, 122
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 1 cut(s) 563
Hin6I GCGC 2 cut(s) 25, 120
HinP1I GCGC 2 cut(s) 25, 120
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 4 cut(s) 101, 197, 233, 386
HpaII CCGG 3 cut(s) 136, 201, 340
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 279, 294, 385, 554
Hpy188III TCNNGA 2 cut(s) 435, 575
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 456
HpyCH4IV ACGT 2 cut(s) 159, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 77, 382, 518
HpySE526I ACGT 2 cut(s) 159, 215
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 1 cut(s) 563
HspAI GCGC 2 cut(s) 25, 120
Kzo9I GATC 2 cut(s) 271, 297
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 270
MabI ACCWGGT 1 cut(s) 261
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 159, 215
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 273, 299
MboI GATC 2 cut(s) 271, 297
MboII GAAGA 3 cut(s) 315, 359, 541
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 8, 519
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 2 cut(s) 420, 568
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 3 cut(s) 206, 242, 395
MmeI TCCRAC 1 cut(s) 210
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 240
MspI CCGG 3 cut(s) 136, 201, 340
MspR9I CCNGG 2 cut(s) 202, 263
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 202
NdeII GATC 2 cut(s) 271, 297
NlaIII CATG 1 cut(s) 563
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 306
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 101
Pfl23II CGTACG 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 3 cut(s) 108, 171, 209
PleI GAGTC 3 cut(s) 205, 241, 394
PpsI GAGTC 3 cut(s) 205, 241, 394
Ppu21I YACGTR 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspLI CGTACG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 2 cut(s) 265, 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 519
SatI GCNGC 3 cut(s) 107, 170, 208
Sau3AI GATC 2 cut(s) 271, 297
Sau96I GGNCC 2 cut(s) 265, 437
SchI GAGTC 3 cut(s) 206, 242, 395
ScrFI CCNGG 2 cut(s) 202, 263
SduI GDGCHC 2 cut(s) 8, 519
SetI ASST 9 cut(s) 20, 162, 209, 218, 264, 442, 501, 519, 602
SexAI ACCWGGT 1 cut(s) 261
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 265, 437
Sse9I AATT 2 cut(s) 420, 568
SsiI CCGC 6 cut(s) 12, 84, 107, 170, 227, 409
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 200, 261
TaiI ACGT 2 cut(s) 162, 218
TasI AATT 2 cut(s) 420, 568
TauI GCSGC 2 cut(s) 109, 172
TfiI GAWTC 1 cut(s) 101
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 121, 471, 576, 605
TspGWI ACGGA 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 265, 437
XapI RAATTY 1 cut(s) 568
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.