Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005475

Physical Location & Seq

Genomic Coordinates Forward (+)

1190763 .. 1192716

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATCACCACCACCACCGCCCTGCACCAGTGGCTCATGGCCTTCGTCCTAGCCTGGACACTCGTCGTTCTATCCGCAGCAGCAGCAGAACCGCCGCCGCAGCCAGGTTGCGCCGACGAGCTCGTGAGGTTCTCGCCGTGCCTTCCGTACGTGTCGTCTCCTCCCAACAACCTCTCCGACTCGGCCCCACCCAAGTGCTGCGACGCATTGTCGTCGTCGTTTGAGTCCGGCGAGGCCTTGTGCCTCTGCTACTTGATCCAGGACCCTCCGATGCTTGGGTTTCCGGTGAACGAGACTCGCGTTCTGTCTCTGTCTTCTACTTGCCCTCTCAGCAACAATGGCACAAGCACAAAGAGCGCTGATAATTCTTTGGAGTCGCTCTGCTCAGGGTCGCCTGAACTCCCTCCTCTCCGCAGCTCAACGACTTCAGGGATTTCATGTCCTTCTCCTTCTCCTTCTGGAGCTGACAATGCTTCATCTCCTTTGATGAGCTTACCATCAGAATCAACAAACAGTTCAAGCTTGCTGCCGGGAAAGAGATCGCCGACGACAACTCCACCAAGCTCAGCAGTAGAACCAGCTAGGGTGTCTACAGCAATGAAGCAAATTTGCAGAAGCAATACTTGGTTTCTACCTGCCGTACTGATTTTTCTTGTTCCCATCTCCACTCACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

226

Amino Acids

23.47

Weight (kDa)

4.9

Isoelectric Point (pI)

71.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14805
fragaria_vesca	FvH4_2g27291 FvH4_3g08061 FvH4_4g15980 FvH4_4g15980
malus_domestica	MD13G1196400.v1.1 MD16G1196900.v1.1
prunus_persica	Prupe.1G017200_v2.0.a1
pyrus_communis	pycom13g16850 pycom16g16570
rosa_chinensis	RchiOBHm_Chr4g0391821 RchiOBHm_Chr4g0415591
rosa_laevigata	RLG00000008059 RLG00000008061
rosa_multiflora	Rmu_sc0004599.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359400
rosa_rugosa	Rorug04G0135300 Rorug04G0135600 Rorug05G0402500
rosa_samantha	Rh4AG196300 Rh4BG033400 Rh4BG195000 Rh4BG195100 Rh4CG207000 Rh4CG207200 Rh4CG207300 Rh4DG193900 Rh4DG194200
rosa_wichuraiana	Rw4G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	1 cut(s)	300
AciI	CCGC	6 cut(s)	18, 75, 92, 95, 98, 412
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	149, 642
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	104, 275
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	519
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	53, 103, 258
AjuI	GAANNNNNNNTTGG	2 cut(s)	607, 639
AleI	CACNNNNGTG	1 cut(s)	193
AluBI	AGCT	7 cut(s)	121, 417, 464, 492, 522, 564, 581
AluI	AGCT	7 cut(s)	121, 417, 464, 492, 522, 564, 581
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	3 cut(s)	162, 287, 312
AlwI	GGATC	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	3 cut(s)	39, 183, 234
ApeKI	GCWGC	7 cut(s)	77, 80, 83, 100, 198, 414, 526
ApoI	RAATTY	1 cut(s)	606
AspLEI	GCGC	2 cut(s)	113, 359
AspS9I	GGNCC	2 cut(s)	184, 262
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	2 cut(s)	298, 662
AvaII	GGWCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	7 cut(s)	89, 92, 95, 112, 185, 426, 513
BccI	CCATC	2 cut(s)	505, 668
BceAI	ACGGC	2 cut(s)	121, 623
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	3 cut(s)	55, 105, 260
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	162, 287, 312
BfaI	CTAG	2 cut(s)	50, 582
BfmI	CTRYAG	2 cut(s)	591, 674
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	9 cut(s)	78, 81, 84, 95, 98, 101, 199, 415, 527
BlpI	GCTNAGC	1 cut(s)	565
BlsI	GCNGC	9 cut(s)	79, 82, 85, 96, 99, 102, 200, 416, 528
Bme1390I	CCNGG	4 cut(s)	55, 105, 260, 531
Bme18I	GGWCC	1 cut(s)	262
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	184, 262
BmiI	GGNNCC	2 cut(s)	186, 264
BmrFI	CCNGG	4 cut(s)	55, 105, 260, 531
BmsI	GCATC	1 cut(s)	261
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	565
BpuMI	CCSGG	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 275
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	3 cut(s)	55, 105, 260
BseLI	CCNNNNNNNGG	2 cut(s)	104, 275
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	343, 399, 579
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	150, 396
BseXI	GCAGC	7 cut(s)	89, 92, 95, 112, 185, 426, 513
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	41, 185, 236
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	228, 284, 530
BsiWI	CGTACG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	104, 275
BsmAI	GTCTC	3 cut(s)	162, 287, 312
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	41, 185, 236
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	3, 255, 539
Bsp1720I	GCTNAGC	1 cut(s)	565
BspACI	CCGC	6 cut(s)	18, 75, 92, 95, 98, 412
BspANI	GGCC	3 cut(s)	41, 185, 236
BspCNI	CTCAG	3 cut(s)	342, 398, 578
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	186, 264
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	3, 255, 539
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	3 cut(s)	55, 105, 260
Bst4CI	ACNGT	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	329, 385, 565
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	2 cut(s)	113, 359
BstKTI	GATC	3 cut(s)	6, 258, 542
BstMAI	GTCTC	3 cut(s)	162, 287, 312
BstMBI	GATC	3 cut(s)	3, 255, 539
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 83, 100, 330, 339, 354, 470
BstNI	CCWGG	3 cut(s)	55, 105, 260
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	4 cut(s)	53, 103, 258, 529
BstSFI	CTRYAG	2 cut(s)	591, 674
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	7 cut(s)	89, 92, 95, 112, 185, 426, 513
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	41, 185, 236
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	2 cut(s)	113, 359
Cfr13I	GGNCC	2 cut(s)	184, 262
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	148, 641
CviAII	CATG	2 cut(s)	37, 438
CviQI	GTAC	2 cut(s)	148, 641
DdeI	CTNAG	3 cut(s)	329, 385, 565
DpnI	GATC	3 cut(s)	5, 257, 541
DpnII	GATC	3 cut(s)	3, 255, 539
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	53, 103, 258
EcoT38I	GRGCYC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	2 cut(s)	40, 441
FaiI	YATR	3 cut(s)	38, 439, 676
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FatI	CATG	2 cut(s)	36, 437
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	9 cut(s)	78, 81, 84, 95, 98, 101, 199, 415, 527
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	9 cut(s)	78, 81, 84, 95, 98, 101, 199, 415, 527
FspBI	CTAG	2 cut(s)	50, 582
GlaI	GCGC	2 cut(s)	112, 358
GluI	GCNGC	9 cut(s)	78, 81, 84, 95, 98, 101, 199, 415, 527
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	41, 185, 236
HapII	CCGG	3 cut(s)	228, 284, 530
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	2 cut(s)	113, 359
Hin1II	CATG	2 cut(s)	40, 441
Hin6I	GCGC	2 cut(s)	111, 357
HinP1I	GCGC	2 cut(s)	111, 357
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	5 cut(s)	179, 224, 295, 374, 503
HpaII	CCGG	3 cut(s)	228, 284, 530
HphI	GGTGA	2 cut(s)	298, 662
Hpy166II	GTNNAC	2 cut(s)	289, 591
Hpy188I	TCNGA	3 cut(s)	178, 270, 502
Hpy188III	TCNNGA	2 cut(s)	124, 459
Hpy8I	GTNNAC	2 cut(s)	289, 591
Hpy99I	CGWCG	6 cut(s)	68, 119, 206, 217, 220, 550
HpyAV	CCTTC	5 cut(s)	52, 152, 453, 459, 465
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	25, 612
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 83, 100, 330, 339, 354, 470
HpyF3I	CTNAG	3 cut(s)	329, 385, 565
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	40, 441
HspAI	GCGC	2 cut(s)	111, 357
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 255, 539
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	7 cut(s)	89, 92, 95, 112, 185, 426, 513
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	2 cut(s)	50, 582
MaeII	ACGT	1 cut(s)	150
MalI	GATC	3 cut(s)	5, 257, 541
MboI	GATC	3 cut(s)	3, 255, 539
MboII	GAAGA	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	364, 606
MlyI	GAGTC	4 cut(s)	173, 233, 289, 383
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	9 cut(s)	120, 171, 182, 226, 254, 276, 336, 414, 417
MslI	CAYNNNNRTG	1 cut(s)	193
MspI	CCGG	3 cut(s)	228, 284, 530
MspR9I	CCNGG	4 cut(s)	55, 105, 260, 531
MvaI	CCWGG	3 cut(s)	55, 105, 260
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	7 cut(s)	31, 83, 100, 330, 339, 354, 470
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	3, 255, 539
NlaIII	CATG	2 cut(s)	40, 441
NlaIV	GGNNCC	2 cut(s)	186, 264
NmeAIII	GCCGAG	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	503
Pfl23II	CGTACG	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	9 cut(s)	79, 82, 85, 96, 99, 102, 200, 416, 528
PleI	GAGTC	4 cut(s)	173, 232, 289, 382
PpsI	GAGTC	4 cut(s)	173, 232, 289, 382
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	53, 103, 258
PspGI	CCWGG	3 cut(s)	53, 103, 258
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	186, 264
PspPI	GGNCC	2 cut(s)	184, 262
PspPPI	RGGWCCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	149, 642
RsaNI	GTAC	2 cut(s)	148, 641
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	9 cut(s)	78, 81, 84, 95, 98, 101, 199, 415, 527
Sau3AI	GATC	3 cut(s)	3, 255, 539
Sau96I	GGNCC	2 cut(s)	184, 262
SchI	GAGTC	4 cut(s)	173, 233, 289, 383
ScrFI	CCNGG	4 cut(s)	55, 105, 260, 531
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	2 cut(s)	591, 674
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	364, 606
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	6 cut(s)	18, 75, 92, 95, 98, 412
SspMI	CTAG	2 cut(s)	50, 582
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	4 cut(s)	53, 103, 258, 529
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	153
TasI	AATT	2 cut(s)	364, 606
TauI	GCSGC	2 cut(s)	97, 100
TfiI	GAWTC	1 cut(s)	503
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	7 cut(s)	77, 80, 83, 100, 198, 414, 526
TspDTI	ATGAA	3 cut(s)	426, 465, 614
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	590
XspI	CTAG	2 cut(s)	50, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.