Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005475

Physical Location & Seq

Genomic Coordinates Forward (+)

12569536 .. 12570587

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATAACCACTGCCACCGCTCCTCCGCCCCTCATGGCCATCCTCCTCGCCTTGACGCTCGCCATTATCAGCACCGAAGCAGCAGAACCGCCGTCGCCGCTACCCAGTTGTGGTGACGAGCTCGTGAGATTCTCGCCGTGCCTGCCGTACGTGTCGTCTCCGCCGAACAACCTCTCCGACTCGCCCCCACCCAAGTGCTGCGACGCGTTCTCGCTGTCGCTGGAGTCCGGTGGCGCTCTGTGCCTCTGCTACCTGGTCCAGGATCCTCCTATGCTCGGGTTTCCCGTGAACGGGAGTCGCGTTCTGTTTCTGTCTTCCACTTGCCCTCTCGGAGACATTTCCACAAACACAAGCAGTGCAGAGTCTTTGGAATCGCTCTGCTCAGGATCGCCAGAACTCCCTCCTCTCCGCAGCTCAACAATTTCAGAGATTTCTCCTCCTCCTTCTGGTTTTGAGTCTGTTGGCAATGCTTCATCTCCTCTCATGAGCTTAGCACCAGAATCAGCAAACACTACAAGCATTCCACCGGGAAACAGATCTCCGACTCCACCAAGCTCAGCGGTATATCCGGCTAGGGTTTCAGCAGCAGTGAAGCAAATTCACACAAGCAACACTTGGTTTCTACCTGCCCTACTGAGTTTCCTTGTTTCCATGTCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

221

Amino Acids

22.63

Weight (kDa)

4.39

Isoelectric Point (pI)

78.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14805
fragaria_vesca	FvH4_2g27291 FvH4_3g08061 FvH4_4g15980 FvH4_4g15980
malus_domestica	MD13G1196400.v1.1 MD16G1196900.v1.1
prunus_persica	Prupe.1G017200_v2.0.a1
pyrus_communis	pycom13g16850 pycom16g16570
rosa_chinensis	RchiOBHm_Chr4g0391821 RchiOBHm_Chr4g0415591
rosa_laevigata	RLG00000008059 RLG00000008061
rosa_multiflora	Rmu_sc0004599.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359400
rosa_rugosa	Rorug04G0135300 Rorug04G0135600 Rorug05G0402500
rosa_samantha	Rh4AG196300 Rh4BG033400 Rh4BG195000 Rh4BG195100 Rh4CG207000 Rh4CG207200 Rh4CG207300 Rh4DG193900 Rh4DG194200
rosa_wichuraiana	Rw4G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	2 cut(s)	206, 300
AciI	CCGC	7 cut(s)	18, 26, 89, 98, 161, 409, 560
AclWI	GGATC	3 cut(s)	257, 270, 394
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	597
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	6 cut(s)	110, 259, 275, 290, 291, 446
AflIII	ACRYGT	2 cut(s)	150, 204
AjnI	CCWGG	2 cut(s)	252, 258
AleI	CACNNNNGTG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	5 cut(s)	121, 414, 489, 555, 660
AluI	AGCT	5 cut(s)	121, 414, 489, 555, 660
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	162, 327
AlwI	GGATC	3 cut(s)	257, 270, 394
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	80, 198, 411, 584
ApoI	RAATTY	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	92, 185, 423, 596
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	3 cut(s)	76, 121, 130
BciT130I	CCWGG	2 cut(s)	254, 260
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	162, 327
BfaI	CTAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	5 cut(s)	81, 98, 199, 412, 585
BlpI	GCTNAGC	2 cut(s)	490, 556
BlsI	GCNGC	5 cut(s)	82, 99, 200, 413, 586
Bme1390I	CCNGG	3 cut(s)	254, 260, 528
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	3 cut(s)	254, 260, 528
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	382
Bpu1102I	GCTNAGC	2 cut(s)	490, 556
BpuMI	CCSGG	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 158, 188
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 259, 275, 290, 291, 446
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	254, 260
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	6 cut(s)	110, 259, 275, 290, 291, 446
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	3 cut(s)	396, 570, 626
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	6 cut(s)	12, 35, 393, 426, 429, 468
BseXI	GCAGC	4 cut(s)	92, 185, 423, 596
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	2 cut(s)	206, 300
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	228, 527, 569
BsiWI	CGTACG	1 cut(s)	147
BslI	CCNNNNNNNGG	6 cut(s)	110, 259, 275, 290, 291, 446
BsmAI	GTCTC	2 cut(s)	162, 327
BsmBI	CGTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	262, 386, 536
Bsp1720I	GCTNAGC	2 cut(s)	490, 556
BspACI	CCGC	7 cut(s)	18, 26, 89, 98, 161, 409, 560
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	3 cut(s)	395, 569, 627
BspFNI	CGCG	2 cut(s)	206, 300
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	3 cut(s)	257, 270, 394
BsrBI	CCGCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	262, 386, 536
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	254, 260
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	60, 143
BstDEI	CTNAG	4 cut(s)	382, 490, 556, 635
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	206, 300
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	265, 389, 539
BstMAI	GTCTC	2 cut(s)	162, 327
BstMBI	GATC	3 cut(s)	262, 386, 536
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 142, 240
BstNI	CCWGG	2 cut(s)	254, 260
BstSCI	CCNGG	3 cut(s)	252, 258, 526
BstUI	CGCG	2 cut(s)	206, 300
BstV1I	GCAGC	4 cut(s)	92, 185, 423, 596
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	262, 536
BstYI	RGATCY	2 cut(s)	262, 536
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	3 cut(s)	9, 361, 594
BtsIMutI	CAGTG	3 cut(s)	9, 361, 594
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	60, 143
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	2 cut(s)	64, 212
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	34, 484, 652
CviJI	RGCY	7 cut(s)	38, 121, 414, 489, 555, 572, 660
CviKI_1	RGCY	7 cut(s)	38, 121, 414, 489, 555, 572, 660
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	4 cut(s)	382, 490, 556, 635
DpnI	GATC	3 cut(s)	264, 388, 538
DpnII	GATC	3 cut(s)	262, 386, 536
EaeI	YGGCCR	1 cut(s)	36
EciI	GGCGGA	2 cut(s)	15, 150
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	252, 258
EcoT38I	GRGCYC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	3 cut(s)	37, 487, 655
FaiI	YATR	5 cut(s)	35, 272, 485, 565, 653
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FatI	CATG	3 cut(s)	33, 483, 651
Fnu4HI	GCNGC	5 cut(s)	81, 98, 199, 412, 585
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	5 cut(s)	81, 98, 199, 412, 585
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	5 cut(s)	81, 98, 199, 412, 585
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	3 cut(s)	228, 527, 569
HgaI	GACGC	2 cut(s)	64, 212
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	37, 487, 655
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	9 cut(s)	129, 179, 224, 295, 362, 371, 455, 500, 544
HpaII	CCGG	3 cut(s)	228, 527, 569
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	178, 332, 427, 543
Hpy188III	TCNNGA	3 cut(s)	124, 384, 484
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	2 cut(s)	97, 206
HpyAV	CCTTC	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 142, 240
HpyF3I	CTNAG	4 cut(s)	382, 490, 556, 635
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	37, 487, 655
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	262, 386, 536
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	4 cut(s)	92, 185, 423, 596
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	264, 388, 538
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	3 cut(s)	262, 386, 536
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	2 cut(s)	262, 536
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	420, 597
MluI	ACGCGT	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	6 cut(s)	173, 233, 304, 371, 464, 538
MmeI	TCCRAC	2 cut(s)	201, 566
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	560, 660
MspI	CCGG	3 cut(s)	228, 527, 569
MspR9I	CCNGG	3 cut(s)	254, 260, 528
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	254, 260
MvnI	CGCG	2 cut(s)	206, 300
MwoI	GCNNNNNNNGC	3 cut(s)	97, 142, 240
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	3 cut(s)	262, 386, 536
NlaIII	CATG	3 cut(s)	37, 487, 655
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	193
PagI	TCATGA	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	3 cut(s)	161, 282, 297
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	129, 371, 500
Pfl23II	CGTACG	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	5 cut(s)	82, 99, 200, 413, 586
PleI	GAGTC	6 cut(s)	173, 232, 303, 370, 463, 538
PpsI	GAGTC	6 cut(s)	173, 232, 303, 370, 463, 538
Ppu21I	YACGTR	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	252, 258
PspGI	CCWGG	2 cut(s)	252, 258
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	262, 536
PvuII	CAGCTG	1 cut(s)	660
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	5 cut(s)	81, 98, 199, 412, 585
Sau3AI	GATC	3 cut(s)	262, 386, 536
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	6 cut(s)	173, 233, 304, 371, 464, 538
ScrFI	CCNGG	3 cut(s)	254, 260, 528
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	9 cut(s)	123, 153, 174, 255, 416, 491, 557, 628, 662
SexAI	ACCWGGT	1 cut(s)	252
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	420, 597
SsiI	CCGC	7 cut(s)	18, 26, 89, 98, 161, 409, 560
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	252, 258, 526
TaiI	ACGT	1 cut(s)	153
TasI	AATT	2 cut(s)	420, 597
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	3 cut(s)	129, 371, 500
TscAI	CASTG	3 cut(s)	16, 361, 594
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	4 cut(s)	80, 198, 411, 584
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	3 cut(s)	16, 361, 594
VpaK11BI	GGWCC	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	597
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.