RchiOBHm_Chr4g0391821

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005475
Physical Location & Seq
Reverse (-)
7242385 .. 7242774
390 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36461

Sequence Viewer

Length: 390 bp
ATGAGCACCGCCACCACTCTGCGCTCGTCGTCTCTCATGGCCATCCTCCTCCTCGCCTCCTTGTTCGTCACTCTAGGCTCCGAAAAGTCAGCAAAAGAATCGTCGCCGTCCGCTTGCGCCGACGAGCTCGTCCGTTTCTCGCCGTGCCTATCGTACGTGGCGTCGGCGCCGAACAACCTCTCCGACTCGCCGACCTCCAAGTGCTGTGAGGCATTCTCGTCTGCAGCCGACTCAGGCCGCGCTGTTTGCCTCTGCTACCTGGTCCAAGATCCTCTGATGCTAGGCTTTCCGGTGACCGTCGCTCGCGTCCTCTCTCTCTCTTCAATTTTCCGTAGCCGGAACTTCACCACTATTTCTACTTTTCTTCAGTCTCTCTGCTCAGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

129

Amino Acids

13.55

Weight (kDa)

7.52

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 29 - 108 8.4e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 2 cut(s) 240, 306
AciI CCGC 3 cut(s) 9, 111, 238
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 2 cut(s) 161, 167
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 1 cut(s) 324
AjnI CCWGG 1 cut(s) 258
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 2 cut(s) 8, 129
Alw26I GTCTC 2 cut(s) 36, 375
AlwI GGATC 1 cut(s) 263
AoxI GGCC 2 cut(s) 39, 235
ApeKI GCWGC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 4 cut(s) 24, 119, 169, 242
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 304, 337
AvaII GGWCC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 8, 129
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 91, 127
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 36, 375
BfaI CTAG 2 cut(s) 74, 281
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 2 cut(s) 225, 238
BlsI GCNGC 2 cut(s) 226, 239
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 79, 168
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 379
BsaAI YACGTR 1 cut(s) 157
BsaHI GRCGYC 2 cut(s) 161, 167
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 38, 41
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 240, 306
BshFI GGCC 2 cut(s) 41, 237
BshNI GGYRCC 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 8, 129
BsiSI CCGG 2 cut(s) 290, 337
BsiWI CGTACG 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 36, 375
BsmBI CGTCTC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 41, 237
Bsp1286I GDGCHC 2 cut(s) 8, 129
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 3 cut(s) 9, 111, 238
BspANI GGCC 2 cut(s) 41, 237
BspCNI CTCAG 1 cut(s) 245
BspFNI CGCG 2 cut(s) 240, 306
BspLI GGNNCC 2 cut(s) 79, 168
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 166
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 2 cut(s) 161, 167
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 2 cut(s) 161, 167
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 115, 304
BstDEI CTNAG 2 cut(s) 232, 379
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 2 cut(s) 240, 306
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 4 cut(s) 24, 119, 169, 242
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 36, 375
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 2 cut(s) 240, 306
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 41, 237
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 115, 304
CfoI GCGC 4 cut(s) 24, 119, 169, 242
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 2 cut(s) 150, 295
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 37
CviJI RGCY 7 cut(s) 41, 78, 127, 227, 237, 285, 336
CviKI_1 RGCY 7 cut(s) 41, 78, 127, 227, 237, 285, 336
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 232, 379
DinI GGCGCC 1 cut(s) 168
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 350
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 225, 238
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 225, 238
FspBI CTAG 2 cut(s) 74, 281
GlaI GCGC 4 cut(s) 23, 118, 168, 241
GluI GCNGC 2 cut(s) 225, 238
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 41, 237
HapII CCGG 2 cut(s) 290, 337
HgaI GACGC 2 cut(s) 150, 295
HhaI GCGC 4 cut(s) 24, 119, 169, 242
Hin1I GRCGYC 2 cut(s) 161, 167
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 4 cut(s) 22, 117, 167, 240
HinP1I GCGC 4 cut(s) 22, 117, 167, 240
HinfI GANTC 3 cut(s) 98, 185, 230
HpaII CCGG 2 cut(s) 290, 337
HphI GGTGA 2 cut(s) 304, 337
Hpy188I TCNGA 3 cut(s) 82, 184, 276
Hpy188III TCNNGA 1 cut(s) 387
Hpy99I CGWCG 5 cut(s) 31, 106, 125, 166, 302
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 232, 379
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 2 cut(s) 161, 167
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 4 cut(s) 22, 117, 167, 240
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 6 cut(s) 219, 245, 272, 303, 350, 366
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 267
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 2 cut(s) 74, 281
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 67, 292
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 312, 356
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 8, 129
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 324
MluNI TGGCCA 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 2 cut(s) 179, 224
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 41
MspI CCGG 2 cut(s) 290, 337
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 240, 306
MwoI GCNNNNNNNGC 1 cut(s) 246
NarI GGCGCC 1 cut(s) 167
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 79, 168
NmuCI GTSAC 2 cut(s) 67, 292
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 98
Pfl23II CGTACG 1 cut(s) 153
PkrI GCNGC 2 cut(s) 226, 239
PleI GAGTC 2 cut(s) 179, 224
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 2 cut(s) 179, 224
Ppu21I YACGTR 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 258
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 79, 168
PspPI GGNCC 1 cut(s) 262
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 2 cut(s) 225, 238
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 2 cut(s) 179, 224
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 8, 129
SetI ASST 6 cut(s) 129, 159, 180, 197, 261, 385
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 222
SfoI GGCGCC 1 cut(s) 168
SinI GGWCC 1 cut(s) 262
Sse9I AATT 1 cut(s) 324
SsiI CCGC 3 cut(s) 9, 111, 238
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 2 cut(s) 74, 281
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 159
TasI AATT 1 cut(s) 324
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 98
TseFI GTSAC 2 cut(s) 67, 292
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 2 cut(s) 67, 292
TspGWI ACGGA 2 cut(s) 122, 320
VpaK11BI GGWCC 1 cut(s) 262
XspI CTAG 2 cut(s) 74, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.