Rorug05G0402500

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005475
Physical Location & Seq
Reverse (-)
55309215 .. 55310264
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0402500.1

Sequence Viewer

Length: 291 bp
ATGGGTTTCCAGTTGCCTGGAATTTCCAACGCCAAGAGAAGTCTTACTAGATCTGTATCAGCTTTAAAGAGCTTAGATATCCCGAAAGGCTACTTTGCTGTCTATGTTGGGAAGAGCCAGATGAAGCGATTTGTGATTCCAGTATCATTCTTCAACGAGCCTATGTTTCTGGATTTGTTGAGTCAAGCCGAAGAAGAATTTGGATATTATCATCCAATGGGTGGTATCACAATCCCCTGCAGTGAACACATACACACCTTCCTCGATCTCACTTCTCGCTTGTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

7.81

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 83 3.6e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AcsI RAATTY 2 cut(s) 21, 197
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 62, 72
AluI AGCT 2 cut(s) 62, 72
ApoI RAATTY 2 cut(s) 21, 197
BciT130I CCWGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 238
BglII AGATCT 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 10, 140
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 221
BseNI ACTGG 2 cut(s) 10, 140
BslI CCNNNNNNNGG 1 cut(s) 221
Bsp143I GATC 2 cut(s) 50, 265
BspMAI CTGCAG 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 107
BsrI ACTGG 2 cut(s) 10, 140
BssMI GATC 2 cut(s) 50, 265
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 53, 268
BstMBI GATC 2 cut(s) 50, 265
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 1 cut(s) 50
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
CviJI RGCY 6 cut(s) 62, 72, 90, 117, 160, 188
CviKI_1 RGCY 6 cut(s) 62, 72, 90, 117, 160, 188
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 52, 267
DpnII GATC 2 cut(s) 50, 265
DraI TTTAAA 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 79
FaiI YATR 4 cut(s) 105, 164, 251, 289
FokI GGATG 1 cut(s) 198
FspBI CTAG 1 cut(s) 48
HinfI GANTC 2 cut(s) 136, 181
Hpy166II GTNNAC 1 cut(s) 245
Hpy188III TCNNGA 2 cut(s) 82, 170
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 73
Kzo9I GATC 2 cut(s) 50, 265
LguI GCTCTTC 1 cut(s) 107
LpnPI CCDG 7 cut(s) 3, 23, 30, 131, 153, 155, 250
MaeI CTAG 1 cut(s) 48
MalI GATC 2 cut(s) 52, 267
MboI GATC 2 cut(s) 50, 265
MboII GAAGA 4 cut(s) 124, 142, 203, 206
MflI RGATCY 1 cut(s) 50
MluCI AATT 2 cut(s) 21, 197
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 1 cut(s) 272
MseI TTAA 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
NdeII GATC 2 cut(s) 50, 265
PciSI GCTCTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PstI CTGCAG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 2 cut(s) 50, 265
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 18
SetI ASST 3 cut(s) 64, 74, 260
SfcI CTRYAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 21, 197
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 21, 197
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 2 cut(s) 21, 197
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.