Rh4CG207200

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005475
Physical Location & Seq
Reverse (-)
43544248 .. 43544872
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG207200.1

Sequence Viewer

Length: 459 bp
ATGAGCACCGCCACCGCTATGCGCTCGTCGTCTCTCATGGCCATCCTCCTCCTCTCCTCCTTGTTCGTCACTCTCGGCGTCGCAAAGTCAGCAAAAGAATCGCCGTCGTCCGCTTGTGCCGACGAGCTCGTTCGGTTCTCGCCGTGTCTGTCGTACGTGGCGTCGGCGCCGAACAACCTCTCCGACTCGCCGGCATCCAAATTCTGCGACGCGTTCTCGTCTGCGGCGGAGTCCGGCCGCGCCGTTTGCCTCTGCTACCTGGTCCAGGATCCTCTAATGCTAGGCTTTCCGGTGACCGTCGCTCTCGTCCTCTCTCTCTCTTCCGTTTGCCGTAGCCGGAACTCCACCACTGCTTCTACTTCTCTTCAGTCTCTCTGCTCAGAGTCGCCGGAACTCCCTCCTCTCCGCAACACCACGATTTCAATTAGGGAAGCCTTTAATTTGAGTTTGGGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

152

Amino Acids

15.91

Weight (kDa)

7.52

Isoelectric Point (pI)

70.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 27 - 116 4.2e-11 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 2 cut(s) 212, 240
AciI CCGC 7 cut(s) 9, 15, 111, 224, 227, 238, 406
AclWI GGATC 2 cut(s) 263, 276
AcoI YGGCCR 2 cut(s) 39, 235
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 3 cut(s) 78, 161, 167
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 423
AjnI CCWGG 2 cut(s) 258, 264
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 2 cut(s) 8, 129
Alw26I GTCTC 2 cut(s) 36, 375
AlwI GGATC 2 cut(s) 263, 276
AoxI GGCC 2 cut(s) 39, 235
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 3 cut(s) 24, 169, 242
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 41
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 8, 129
BccI CCATC 1 cut(s) 50
BceAI ACGGC 4 cut(s) 88, 127, 227, 315
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 2 cut(s) 260, 266
BcoDI GTCTC 2 cut(s) 36, 375
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 2 cut(s) 225, 238
BlsI GCNGC 2 cut(s) 226, 239
Bme1390I CCNGG 2 cut(s) 260, 266
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 168, 270
BmrFI CCNGG 2 cut(s) 260, 266
BmsI GCATC 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 157
BsaHI GRCGYC 3 cut(s) 78, 161, 167
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 190
BseBI CCWGG 2 cut(s) 260, 266
BseGI GGATG 2 cut(s) 42, 194
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 4 cut(s) 38, 41, 46, 390
BseX3I CGGCCG 1 cut(s) 235
Bsh1236I CGCG 2 cut(s) 212, 240
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 41, 237
BshNI GGYRCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 8, 129
BsiSI CCGG 5 cut(s) 191, 234, 290, 337, 389
BsiWI CGTACG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 36, 375
BsmBI CGTCTC 1 cut(s) 36
BsnI GGCC 2 cut(s) 41, 237
Bsp1286I GDGCHC 2 cut(s) 8, 129
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 7 cut(s) 9, 15, 111, 224, 227, 238, 406
BspANI GGCC 2 cut(s) 41, 237
BspCNI CTCAG 1 cut(s) 392
BspFNI CGCG 2 cut(s) 212, 240
BspLI GGNNCC 2 cut(s) 168, 270
BspPI GGATC 2 cut(s) 263, 276
BspT107I GGYRCC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 3 cut(s) 78, 161, 167
Bst2UI CCWGG 2 cut(s) 260, 266
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 2 cut(s) 325, 369
BstACI GRCGYC 3 cut(s) 78, 161, 167
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 42, 194
BstFNI CGCG 2 cut(s) 212, 240
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 3 cut(s) 24, 169, 242
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 36, 375
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 89, 246
BstNI CCWGG 2 cut(s) 260, 266
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 258, 264
BstUI CGCG 2 cut(s) 212, 240
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BstZI CGGCCG 1 cut(s) 235
BsuRI GGCC 2 cut(s) 41, 237
BtsCI GGATG 2 cut(s) 42, 194
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 3 cut(s) 24, 169, 242
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 3 cut(s) 67, 150, 218
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 37
CviJI RGCY 6 cut(s) 41, 127, 237, 285, 336, 434
CviKI_1 RGCY 6 cut(s) 41, 127, 237, 285, 336, 434
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 379
DinI GGCGCC 1 cut(s) 168
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 39, 235
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 325, 369
EarI CTCTTC 2 cut(s) 325, 369
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 350
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 258, 264
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 20, 38
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 225, 238
FokI GGATG 2 cut(s) 29, 181
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 225, 238
FspBI CTAG 1 cut(s) 281
GlaI GCGC 3 cut(s) 23, 168, 241
GluI GCNGC 2 cut(s) 225, 238
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 41, 237
HapII CCGG 5 cut(s) 191, 234, 290, 337, 389
HgaI GACGC 3 cut(s) 67, 150, 218
HhaI GCGC 3 cut(s) 24, 169, 242
Hin1I GRCGYC 3 cut(s) 78, 161, 167
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 3 cut(s) 22, 167, 240
HinP1I GCGC 3 cut(s) 22, 167, 240
HinfI GANTC 4 cut(s) 98, 185, 230, 383
HpaII CCGG 5 cut(s) 191, 234, 290, 337, 389
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 184, 382
Hpy99I CGWCG 7 cut(s) 31, 83, 109, 125, 166, 212, 302
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 156, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 246
HpyF3I CTNAG 1 cut(s) 379
HpySE526I ACGT 2 cut(s) 156, 454
Hsp92I GRCGYC 3 cut(s) 78, 161, 167
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 3 cut(s) 22, 167, 240
KasI GGCGCC 1 cut(s) 166
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 204, 245, 247, 251, 272, 278, 303, 350, 402
LweI GCATC 1 cut(s) 203
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 1 cut(s) 281
MaeII ACGT 2 cut(s) 156, 454
MaeIII GTNAC 2 cut(s) 67, 292
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 312, 356
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 8, 129
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 3 cut(s) 200, 423, 439
MluI ACGCGT 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 3 cut(s) 179, 239, 392
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 190
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 438, 457
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 41
MspI CCGG 5 cut(s) 191, 234, 290, 337, 389
MspR9I CCNGG 2 cut(s) 260, 266
MvaI CCWGG 2 cut(s) 260, 266
MvnI CGCG 2 cut(s) 212, 240
MwoI GCNNNNNNNGC 2 cut(s) 89, 246
NaeI GCCGGC 1 cut(s) 192
NarI GGCGCC 1 cut(s) 167
NdeII GATC 1 cut(s) 268
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 168, 270
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 67, 292
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdiI GCCGGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 98
Pfl23II CGTACG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 2 cut(s) 226, 239
PleI GAGTC 3 cut(s) 179, 238, 391
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 3 cut(s) 179, 238, 391
Ppu21I YACGTR 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 258, 264
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 258, 264
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 168, 270
PspPI GGNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 438, 457
SatI GCNGC 2 cut(s) 225, 238
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 3 cut(s) 179, 239, 392
ScrFI CCNGG 2 cut(s) 260, 266
SduI GDGCHC 2 cut(s) 8, 129
SetI ASST 5 cut(s) 129, 159, 180, 261, 457
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 1 cut(s) 203
SfoI GGCGCC 1 cut(s) 168
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 3 cut(s) 200, 423, 439
SsiI CCGC 7 cut(s) 9, 15, 111, 224, 227, 238, 406
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 258, 264
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 159, 457
TasI AATT 3 cut(s) 200, 423, 439
TauI GCSGC 2 cut(s) 227, 240
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 438, 457
Tru9I TTAA 2 cut(s) 438, 457
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 2 cut(s) 67, 292
Tsp45I GTSAC 2 cut(s) 67, 292
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.