Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005475

Physical Location & Seq

Genomic Coordinates Reverse (-)

21949244 .. 21949714

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTAATCCAGCAAGCCAAGTCGTTGTTCGGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTCGAGTTCATCAACCGGAACTTCTCCATTTTTTACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTATCAAGAAGAAGAACGGAGCTCCGAACCCAAACCCGGACTTCGCAGATTCCGATTGCCAGATGAAAAGAGCGCCGAAGAAAAGGGGCCGGAAACCCGGGCTGGGCCGAGACACGCCGCTCAACCACGTGGAGGCGGAGCTGCAGCGGCAGGAGAAGCTCACCTCGCAAGGGCGGCGTTGGAAGCGAGGGAGTGAGCGTGGAGGTGAGGAAGGCGGCGTTGGAAGCGAGGGAGTGAGCCAGGAAGAAGGAAGAAGAAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

9.3

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14805
fragaria_vesca	FvH4_2g27291 FvH4_3g08061 FvH4_4g15980 FvH4_4g15980
malus_domestica	MD13G1196400.v1.1 MD16G1196900.v1.1
prunus_persica	Prupe.1G017200_v2.0.a1
pyrus_communis	pycom13g16850 pycom16g16570
rosa_chinensis	RchiOBHm_Chr4g0391821 RchiOBHm_Chr4g0415591
rosa_laevigata	RLG00000008059 RLG00000008061
rosa_multiflora	Rmu_sc0004599.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359400
rosa_rugosa	Rorug04G0135300 Rorug04G0135600 Rorug05G0402500
rosa_samantha	Rh4AG196300 Rh4BG033400 Rh4BG195000 Rh4BG195100 Rh4CG207000 Rh4CG207200 Rh4CG207300 Rh4DG193900 Rh4DG194200
rosa_wichuraiana	Rw4G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	97, 325
AciI	CCGC	6 cut(s)	95, 323, 341, 352, 379, 420
AclWI	GGATC	2 cut(s)	78, 171
AcvI	CACGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	241, 308, 337, 375
AflIII	ACRYGT	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 408, 440
AluBI	AGCT	4 cut(s)	171, 227, 346, 364
AluI	AGCT	4 cut(s)	171, 227, 346, 364
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	78, 171
Ama87I	CYCGRG	2 cut(s)	98, 302
AoxI	GGCC	2 cut(s)	292, 310
ApeKI	GCWGC	2 cut(s)	346, 349
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	292, 310
AsuC2I	CCSGG	4 cut(s)	83, 242, 303, 304
AsuHPI	GGTGA	2 cut(s)	358, 422
AvaI	CYCGRG	2 cut(s)	98, 302
BanII	GRGCYC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	333, 361
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	4 cut(s)	83, 242, 303, 304
BcoDI	GTCTC	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	281
BisI	GCNGC	6 cut(s)	323, 347, 350, 353, 380, 421
BlsI	GCNGC	6 cut(s)	324, 348, 351, 354, 381, 422
Bme1390I	CCNGG	5 cut(s)	83, 242, 303, 304, 446
BmeT110I	CYCGRG	2 cut(s)	98, 302
BmgT120I	GGNCC	2 cut(s)	292, 310
BmiI	GGNNCC	2 cut(s)	7, 293
BmrFI	CCNGG	5 cut(s)	83, 242, 303, 304, 446
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	40
BpuMI	CCSGG	4 cut(s)	83, 242, 303, 304
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	11, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 308, 337, 375
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	4 cut(s)	241, 308, 337, 375
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	333, 361
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	294, 312
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	2 cut(s)	98, 302
BsiSI	CCGG	7 cut(s)	12, 83, 112, 147, 242, 295, 303
BslI	CCNNNNNNNGG	4 cut(s)	241, 308, 337, 375
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	294, 312
BsoBI	CYCGRG	2 cut(s)	98, 302
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	18, 70, 163
BspACI	CCGC	6 cut(s)	95, 323, 341, 352, 379, 420
BspANI	GGCC	2 cut(s)	294, 312
BspLI	GGNNCC	2 cut(s)	7, 293
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	2 cut(s)	78, 171
BsrBI	CCGCTC	2 cut(s)	97, 325
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	18, 70, 163
Bst2UI	CCWGG	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	3 cut(s)	48, 148, 152
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	21, 73, 166
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	18, 70, 163
BstMWI	GCNNNNNNNGC	6 cut(s)	352, 361, 370, 379, 388, 429
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	5 cut(s)	81, 240, 301, 302, 444
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	333, 361
BsuRI	GGCC	2 cut(s)	294, 312
Cac8I	GCNNGC	3 cut(s)	48, 148, 152
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	292, 310
Cfr9I	CCCGGG	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	194
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	3 cut(s)	20, 72, 165
DpnII	GATC	3 cut(s)	18, 70, 163
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco72I	CACGTG	1 cut(s)	334
Eco88I	CYCGRG	2 cut(s)	98, 302
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	1 cut(s)	197
FaiI	YATR	1 cut(s)	195
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	323, 347, 350, 353, 380, 421
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	6 cut(s)	323, 347, 350, 353, 380, 421
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	6 cut(s)	323, 347, 350, 353, 380, 421
GsaI	CCCAGC	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	294, 312
HapII	CCGG	7 cut(s)	12, 83, 112, 147, 242, 295, 303
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	7 cut(s)	12, 83, 112, 147, 242, 295, 303
HphI	GGTGA	2 cut(s)	358, 422
Hpy188I	TCNGA	4 cut(s)	23, 70, 231, 259
Hpy188III	TCNNGA	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	410, 446
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	154, 349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	352, 361, 370, 379, 388, 429
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 70, 163
LmnI	GCTCC	3 cut(s)	224, 232, 343
Lsp1109I	GCAGC	2 cut(s)	333, 361
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	333
MalI	GATC	3 cut(s)	20, 72, 165
MbiI	CCGCTC	2 cut(s)	97, 325
MboI	GATC	3 cut(s)	18, 70, 163
MboII	GAAGA	7 cut(s)	170, 226, 229, 295, 461, 468, 471
MhlI	GDGCHC	1 cut(s)	229
MmeI	TCCRAC	3 cut(s)	48, 365, 406
MnlI	CCTC	8 cut(s)	19, 154, 331, 379, 386, 401, 406, 427
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	7 cut(s)	12, 83, 112, 147, 242, 295, 303
MspR9I	CCNGG	5 cut(s)	83, 242, 303, 304, 446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	6 cut(s)	352, 361, 370, 379, 388, 429
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	4 cut(s)	83, 242, 303, 304
NdeII	GATC	3 cut(s)	18, 70, 163
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	7, 293
NmeAIII	GCCGAG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	6 cut(s)	324, 348, 351, 354, 381, 422
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	334
PscI	ACATGT	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	444
PspCI	CACGTG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	7, 293
PspPI	GGNCC	2 cut(s)	292, 310
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	6 cut(s)	323, 347, 350, 353, 380, 421
Sau3AI	GATC	3 cut(s)	18, 70, 163
Sau96I	GGNCC	2 cut(s)	292, 310
ScrFI	CCNGG	5 cut(s)	83, 242, 303, 304, 446
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	7 cut(s)	173, 229, 336, 348, 366, 371, 412
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	6 cut(s)	95, 323, 341, 352, 379, 420
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	5 cut(s)	81, 240, 301, 302, 444
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	99
TauI	GCSGC	4 cut(s)	325, 355, 382, 423
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseI	GCWGC	2 cut(s)	346, 349
TspDTI	ATGAA	2 cut(s)	94, 284
TspGWI	ACGGA	1 cut(s)	237
TspMI	CCCGGG	1 cut(s)	302
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	98
XmaI	CCCGGG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.