Rh4DG194200

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005475
Physical Location & Seq
Reverse (-)
38038582 .. 38040953
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG194200.1

Sequence Viewer

Length: 459 bp
ATGGCGTCGCCGCCGAACAACCACTCCAACTCTCTGGAGTCTGGGAGCTGCGACGCATTCTCGTCGGTGGAGGAGTCTGGCCACGCCTTTTGCCTCTGCTACCTGGTCCAGGATCCTCCGATGCTAGGCTTTCCGATGACCGTCGCTCGCGTCCTCTCTCTATCTTCTATTTGCCGTAGTCGGAACTCCAACATTGCTTCTACTTCTCTTCAGTCTCTCTGCTCAGAGTCGCCGGAACTCCCTCCTCTCTGCAACACCACAATTTCGGTTATGAAACGGCCAAAACCAACAAACAAGTCAACCACAAAACCAAGCTTCTCAACTCCACCGAGCTCAGCAGTAGAACCAGCAAGATTGCCATCGTCGTCAGAGGCCATGAAACGAATTTTCAAGAACAACACTTCTTGTCGATATTATTACAAAGGCATTGCCTGGGGACAATTAGCTACAAGGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

152

Amino Acids

16.46

Weight (kDa)

9.08

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 107, 120
AcoI YGGCCR 2 cut(s) 79, 278
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 109, 125
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 3 cut(s) 102, 108, 431
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 48, 315, 333, 446
AluI AGCT 4 cut(s) 48, 315, 333, 446
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 2 cut(s) 107, 120
AoxI GGCC 3 cut(s) 79, 278, 372
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 81
BamHI GGATCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 367
BceAI ACGGC 2 cut(s) 159, 293
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 3 cut(s) 104, 110, 433
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 11, 49
BlpI GCTNAGC 1 cut(s) 334
BlsI GCNGC 2 cut(s) 12, 50
Bme1390I CCNGG 3 cut(s) 104, 110, 433
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 104, 110, 433
BmsI GCATC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 125
Bse3DI GCAATG 2 cut(s) 192, 426
Bse8I GATNNNNATC 1 cut(s) 358
BseBI CCWGG 3 cut(s) 104, 110, 433
BseDI CCNNGG 1 cut(s) 432
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 109, 125
BseMI GCAATG 2 cut(s) 192, 426
BseMII CTCAG 2 cut(s) 237, 348
BseRI GAGGAG 2 cut(s) 86, 234
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 81, 280, 374
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 109, 125
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 3 cut(s) 81, 280, 374
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 334
BspACI CCGC 1 cut(s) 11
BspANI GGCC 3 cut(s) 81, 280, 374
BspCNI CTCAG 2 cut(s) 236, 347
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 2 cut(s) 107, 120
BsrDI GCAATG 2 cut(s) 192, 426
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 104, 110, 433
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 223, 334
BstENI CCTNNNNNAGG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 112
BstNI CCWGG 3 cut(s) 104, 110, 433
BstSCI CCNGG 3 cut(s) 102, 108, 431
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 3 cut(s) 81, 280, 374
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 2 cut(s) 62, 139
CsiI ACCWGGT 1 cut(s) 102
CspCI CAANNNNNGTGG 2 cut(s) 71, 106
CviAII CATG 1 cut(s) 376
CviJI RGCY 8 cut(s) 48, 81, 129, 280, 315, 333, 374, 446
CviKI_1 RGCY 8 cut(s) 48, 81, 129, 280, 315, 333, 374, 446
DdeI CTNAG 2 cut(s) 223, 334
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 79, 278
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 102, 108, 431
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 1 cut(s) 379
FaiI YATR 2 cut(s) 272, 377
FaqI GGGAC 1 cut(s) 450
FatI CATG 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 11, 49
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 11, 49
FspBI CTAG 1 cut(s) 125
GluI GCNGC 2 cut(s) 11, 49
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 81, 280, 374
HapII CCGG 1 cut(s) 233
HgaI GACGC 2 cut(s) 62, 139
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 379
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 3 cut(s) 38, 74, 227
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 5 cut(s) 120, 135, 183, 226, 370
Hpy188III TCNNGA 2 cut(s) 35, 391
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 5 cut(s) 10, 56, 67, 146, 367
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 252
HpyF3I CTNAG 2 cut(s) 223, 334
HpySE526I ACGT 1 cut(s) 455
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 379
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 111
MabI ACCWGGT 1 cut(s) 102
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 455
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 2 cut(s) 156, 200
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 3 cut(s) 261, 384, 440
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 3 cut(s) 47, 83, 236
MmeI TCCRAC 3 cut(s) 51, 161, 213
MnlI CCTC 7 cut(s) 64, 104, 126, 164, 252, 255, 364
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 81
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 104, 110, 433
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 3 cut(s) 104, 110, 433
MvnI CGCG 1 cut(s) 150
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 114
PctI GAATGC 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 2 cut(s) 12, 50
PleI GAGTC 3 cut(s) 46, 82, 235
PpsI GAGTC 3 cut(s) 46, 82, 235
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 3 cut(s) 102, 108, 431
PspGI CCWGG 3 cut(s) 102, 108, 431
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 112
SacI GAGCTC 1 cut(s) 335
SatI GCNGC 2 cut(s) 11, 49
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 3 cut(s) 47, 83, 236
ScrFI CCNGG 3 cut(s) 104, 110, 433
SduI GDGCHC 1 cut(s) 335
SetI ASST 6 cut(s) 50, 105, 317, 335, 448, 458
SexAI ACCWGGT 1 cut(s) 102
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 106
Sse9I AATT 3 cut(s) 261, 384, 440
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 102, 108, 431
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 409
TasI AATT 3 cut(s) 261, 384, 440
TauI GCSGC 1 cut(s) 13
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 287, 392
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 384
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.