RchiOBHm_Chr4g0415591

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005475
Physical Location & Seq
Reverse (-)
40366876 .. 40367875
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38582

Sequence Viewer

Length: 399 bp
ATGAGCACCACCGCCACCGCCACCTCTTTGCGCTCCTCGTCTCTCATGGCCGTCCTCCTCCTCGCCTCCTTGTTCGTTACTCTCGGCGCCGCAAAGTCAGCAAAAGAATCGCCGCCGTCTGCTTGCGCCGACGAGCTCGTCCGGTTCTCGCCGTGCCTGTCTTACGTGGCGTCGCCGCCAAACAACCTCTCCGACTTGCCGGCCTCCAAGTGCTGCGACGCGTTCTCGTCTTCGGGGGAGTCCGGCCGCGCCGTTTGCCTGTGCTACCTGGTCCAGGATCCTCCGATGCTCGGCTTTCCGGTGACCGTCGCTCGCGTCCTCTCTCTCTCTTCCTTTTGCCGTCGCCGGAACTCCACTGCTGCTTCTACTTCTCTTCAGTCTCTCTGCTCAGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

132

Amino Acids

13.61

Weight (kDa)

8.49

Isoelectric Point (pI)

71.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 31 - 119 3e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 3 cut(s) 221, 249, 315
AciI CCGC 6 cut(s) 12, 18, 90, 113, 176, 247
AclWI GGATC 2 cut(s) 272, 285
AcoI YGGCCR 2 cut(s) 48, 244
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 2 cut(s) 87, 170
AfiI CCNNNNNNNGG 2 cut(s) 274, 290
AflIII ACRYGT 1 cut(s) 219
AjnI CCWGG 2 cut(s) 267, 273
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 2 cut(s) 8, 138
Alw26I GTCTC 2 cut(s) 45, 384
AlwI GGATC 2 cut(s) 272, 285
AoxI GGCC 3 cut(s) 48, 201, 244
ApeKI GCWGC 2 cut(s) 213, 359
AspLEI GCGC 4 cut(s) 33, 89, 128, 251
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 8, 138
BbvI GCAGC 2 cut(s) 200, 346
BceAI ACGGC 5 cut(s) 35, 100, 136, 236, 324
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 2 cut(s) 269, 275
BcoDI GTCTC 2 cut(s) 45, 384
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 6 cut(s) 90, 113, 176, 214, 247, 360
BlsI GCNGC 6 cut(s) 91, 114, 177, 215, 248, 361
Bme1390I CCNGG 2 cut(s) 269, 275
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 88, 279
BmrFI CCNGG 2 cut(s) 269, 275
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 87, 170
BsaWI WCCGGW 2 cut(s) 141, 298
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 290
Bse118I RCCGGY 1 cut(s) 199
BseBI CCWGG 2 cut(s) 269, 275
BseLI CCNNNNNNNGG 2 cut(s) 274, 290
BseRI GAGGAG 3 cut(s) 25, 47, 50
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 200, 346
Bsh1236I CGCG 3 cut(s) 221, 249, 315
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 50, 203, 246
BshNI GGYRCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 8, 138
BsiSI CCGG 5 cut(s) 142, 200, 243, 299, 346
BslI CCNNNNNNNGG 2 cut(s) 274, 290
BsmAI GTCTC 2 cut(s) 45, 384
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 3 cut(s) 50, 203, 246
Bsp1286I GDGCHC 2 cut(s) 8, 138
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 6 cut(s) 12, 18, 90, 113, 176, 247
BspANI GGCC 3 cut(s) 50, 203, 246
BspFNI CGCG 3 cut(s) 221, 249, 315
BspLI GGNNCC 2 cut(s) 88, 279
BspPI GGATC 2 cut(s) 272, 285
BspT107I GGYRCC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 1 cut(s) 277
BssNI GRCGYC 2 cut(s) 87, 170
Bst2UI CCWGG 2 cut(s) 269, 275
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 2 cut(s) 334, 378
BstACI GRCGYC 2 cut(s) 87, 170
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 124, 201, 313
BstDEI CTNAG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 272
BstFNI CGCG 3 cut(s) 221, 249, 315
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 4 cut(s) 33, 89, 128, 251
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 45, 384
BstMBI GATC 1 cut(s) 277
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 98, 255
BstNI CCWGG 2 cut(s) 269, 275
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 267, 273
BstUI CGCG 3 cut(s) 221, 249, 315
BstV1I GCAGC 2 cut(s) 200, 346
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 244
BsuRI GGCC 3 cut(s) 50, 203, 246
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 3 cut(s) 124, 201, 313
CfoI GCGC 4 cut(s) 33, 89, 128, 251
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 3 cut(s) 159, 227, 304
CsiI ACCWGGT 1 cut(s) 267
CviAII CATG 1 cut(s) 46
CviJI RGCY 5 cut(s) 50, 136, 203, 246, 294
CviKI_1 RGCY 5 cut(s) 50, 136, 203, 246, 294
DdeI CTNAG 1 cut(s) 388
DinI GGCGCC 1 cut(s) 88
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 48, 244
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 334, 378
EarI CTCTTC 2 cut(s) 334, 378
Ecl136II GAGCTC 1 cut(s) 136
EclXI CGGCCG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 271
Eco52I CGGCCG 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 267, 273
EcoT38I GRGCYC 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 1 cut(s) 47
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 6 cut(s) 90, 113, 176, 214, 247, 360
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 6 cut(s) 90, 113, 176, 214, 247, 360
GlaI GCGC 4 cut(s) 32, 88, 127, 250
GluI GCNGC 6 cut(s) 90, 113, 176, 214, 247, 360
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 3 cut(s) 50, 203, 246
HapII CCGG 5 cut(s) 142, 200, 243, 299, 346
HgaI GACGC 3 cut(s) 159, 227, 304
HhaI GCGC 4 cut(s) 33, 89, 128, 251
Hin1I GRCGYC 2 cut(s) 87, 170
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 4 cut(s) 31, 87, 126, 249
HinP1I GCGC 4 cut(s) 31, 87, 126, 249
HinfI GANTC 2 cut(s) 107, 239
HpaII CCGG 5 cut(s) 142, 200, 243, 299, 346
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 193, 285
Hpy188III TCNNGA 1 cut(s) 396
Hpy99I CGWCG 5 cut(s) 134, 175, 221, 311, 345
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 255
HpyF3I CTNAG 1 cut(s) 388
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 2 cut(s) 87, 170
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 4 cut(s) 31, 87, 126, 249
KasI GGCGCC 1 cut(s) 86
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 2 cut(s) 200, 346
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 267
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 76, 301
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 3 cut(s) 222, 321, 365
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 8, 138
MluI ACGCGT 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 87
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 216
MroNI GCCGGC 1 cut(s) 199
MspI CCGG 5 cut(s) 142, 200, 243, 299, 346
MspR9I CCNGG 2 cut(s) 269, 275
MvaI CCWGG 2 cut(s) 269, 275
MvnI CGCG 3 cut(s) 221, 249, 315
MwoI GCNNNNNNNGC 2 cut(s) 98, 255
NaeI GCCGGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 87
NdeII GATC 1 cut(s) 277
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 88, 279
NmeAIII GCCGAG 2 cut(s) 63, 270
NmuCI GTSAC 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 6 cut(s) 91, 114, 177, 215, 248, 361
PleI GAGTC 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 267, 273
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 2 cut(s) 267, 273
PspN4I GGNNCC 2 cut(s) 88, 279
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 277
SacI GAGCTC 1 cut(s) 138
SatI GCNGC 6 cut(s) 90, 113, 176, 214, 247, 360
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 269, 275
SduI GDGCHC 2 cut(s) 8, 138
SetI ASST 6 cut(s) 26, 138, 168, 189, 270, 394
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 88
SinI GGWCC 1 cut(s) 271
SsiI CCGC 6 cut(s) 12, 18, 90, 113, 176, 247
SspDI GGCGCC 1 cut(s) 86
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 267, 273
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 168
TauI GCSGC 4 cut(s) 92, 115, 178, 249
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 213, 359
Tsp45I GTSAC 1 cut(s) 301
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.