Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004599.1

Orthogroup ID

OG0005475

Physical Location & Seq

Genomic Coordinates Reverse (-)

29302 .. 29700

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004599.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgagcaccaccgccaccgccacctctttgcgctcctcgtctctcatggccgtcctcctcctcgcctccttgttcgtcactctcggagccgcaaagtcagcaaaagaatcgccgccgtccgcttgcgccgacgagctcgtccggttctcgccgtgcctgtcgtacgtggcgtcgccgccgaacaacctctccgactcgccggcgtccaagtgctgcgacacgttctcgtcggcggcggattccggcagagccgtttgcctctgctacctggtccaggatcctccgatgctcggctttccggtgaccgtcgctcgggtcctctcgctctcttccgtttgccgtcgccggaactccaccgctgcttctacttctcttcagtccctttgctcaggttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

132

Amino Acids

13.55

Weight (kDa)

8.49

Isoelectric Point (pI)

72.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14805
fragaria_vesca	FvH4_2g27291 FvH4_3g08061 FvH4_4g15980 FvH4_4g15980
malus_domestica	MD13G1196400.v1.1 MD16G1196900.v1.1
prunus_persica	Prupe.1G017200_v2.0.a1
pyrus_communis	pycom13g16850 pycom16g16570
rosa_chinensis	RchiOBHm_Chr4g0391821 RchiOBHm_Chr4g0415591
rosa_laevigata	RLG00000008059 RLG00000008061
rosa_multiflora	Rmu_sc0004599.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359400
rosa_rugosa	Rorug04G0135300 Rorug04G0135600 Rorug05G0402500
rosa_samantha	Rh4AG196300 Rh4BG033400 Rh4BG195000 Rh4BG195100 Rh4CG207000 Rh4CG207200 Rh4CG207300 Rh4DG193900 Rh4DG194200
rosa_wichuraiana	Rw4G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AciI	CCGC	9 cut(s)	12, 18, 90, 113, 120, 176, 233, 236, 357
AclWI	GGATC	2 cut(s)	272, 285
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	170, 203
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	274, 290, 312
AflIII	ACRYGT	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	267, 273
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	2 cut(s)	8, 138
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	272, 285
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	213, 359
AspLEI	GCGC	2 cut(s)	33, 128
AspS9I	GGNCC	2 cut(s)	271, 316
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	2 cut(s)	271, 316
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	8, 138
BbvI	GCAGC	2 cut(s)	200, 346
BceAI	ACGGC	5 cut(s)	35, 100, 136, 236, 324
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	2 cut(s)	269, 275
BcoDI	GTCTC	1 cut(s)	45
BisI	GCNGC	6 cut(s)	90, 113, 176, 214, 234, 360
BlsI	GCNGC	6 cut(s)	91, 114, 177, 215, 235, 361
Bme1390I	CCNGG	2 cut(s)	269, 275
Bme18I	GGWCC	2 cut(s)	271, 316
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	271, 316
BmiI	GGNNCC	3 cut(s)	88, 279, 317
BmrFI	CCNGG	2 cut(s)	269, 275
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	2 cut(s)	170, 203
BsaWI	WCCGGW	2 cut(s)	141, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 290, 312
Bse118I	RCCGGY	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	269, 275
BseLI	CCNNNNNNNGG	3 cut(s)	274, 290, 312
BseRI	GAGGAG	3 cut(s)	25, 47, 50
BseXI	GCAGC	2 cut(s)	200, 346
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	8, 138
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	5 cut(s)	142, 200, 243, 299, 346
BsiWI	CGTACG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	274, 290, 312
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	8, 138
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	9 cut(s)	12, 18, 90, 113, 120, 176, 233, 236, 357
BspANI	GGCC	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	88, 279, 317
BspPI	GGATC	2 cut(s)	272, 285
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	2 cut(s)	170, 203
Bst2UI	CCWGG	2 cut(s)	269, 275
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	334, 378
BstACI	GRCGYC	2 cut(s)	170, 203
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	124, 201
BstDEI	CTNAG	1 cut(s)	388
BstEII	GGTNACC	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	33, 128
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	269, 275
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	267, 273
BstV1I	GCAGC	2 cut(s)	200, 346
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	124, 201
CfoI	GCGC	2 cut(s)	33, 128
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	271, 316
CseI	GACGC	2 cut(s)	159, 192
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	5 cut(s)	50, 89, 136, 251, 294
CviKI_1	RGCY	5 cut(s)	50, 89, 136, 251, 294
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	334, 378
EarI	CTCTTC	2 cut(s)	334, 378
EciI	GGCGGA	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	271, 316
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	312
Eco91I	GGTNACC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	267, 273
EcoT38I	GRGCYC	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	6 cut(s)	90, 113, 176, 214, 234, 360
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	6 cut(s)	90, 113, 176, 214, 234, 360
GlaI	GCGC	2 cut(s)	32, 127
GluI	GCNGC	6 cut(s)	90, 113, 176, 214, 234, 360
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	5 cut(s)	142, 200, 243, 299, 346
HgaI	GACGC	2 cut(s)	159, 192
HhaI	GCGC	2 cut(s)	33, 128
Hin1I	GRCGYC	2 cut(s)	170, 203
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	31, 126
HinP1I	GCGC	2 cut(s)	31, 126
HinfI	GANTC	3 cut(s)	107, 194, 239
HpaII	CCGG	5 cut(s)	142, 200, 243, 299, 346
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	86, 193, 285
Hpy188III	TCNNGA	1 cut(s)	396
Hpy99I	CGWCG	5 cut(s)	134, 175, 232, 311, 345
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	165, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	2 cut(s)	165, 221
Hsp92I	GRCGYC	2 cut(s)	170, 203
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	31, 126
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	38, 86
Lsp1109I	GCAGC	2 cut(s)	200, 346
LweI	GCATC	1 cut(s)	276
MabI	ACCWGGT	1 cut(s)	267
MaeII	ACGT	2 cut(s)	165, 221
MaeIII	GTNAC	2 cut(s)	76, 301
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	321, 365
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	8, 138
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	216
MreI	CGCCGGCG	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	5 cut(s)	142, 200, 243, 299, 346
MspR9I	CCNGG	2 cut(s)	269, 275
MvaI	CCWGG	2 cut(s)	269, 275
MwoI	GCNNNNNNNGC	1 cut(s)	98
NaeI	GCCGGC	1 cut(s)	201
NdeII	GATC	1 cut(s)	277
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	88, 279, 317
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	76, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	107, 239
Pfl23II	CGTACG	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	6 cut(s)	91, 114, 177, 215, 235, 361
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	267, 273
PspEI	GGTNACC	1 cut(s)	301
PspGI	CCWGG	2 cut(s)	267, 273
PspLI	CGTACG	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	88, 279, 317
PspPI	GGNCC	2 cut(s)	271, 316
PspPPI	RGGWCCY	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	138
SatI	GCNGC	6 cut(s)	90, 113, 176, 214, 234, 360
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	271, 316
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	269, 275
SduI	GDGCHC	2 cut(s)	8, 138
SetI	ASST	7 cut(s)	26, 138, 168, 189, 224, 270, 394
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	276
SgrAI	CRCCGGYG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	271, 316
SsiI	CCGC	9 cut(s)	12, 18, 90, 113, 120, 176, 233, 236, 357
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	267, 273
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	168, 224
TauI	GCSGC	4 cut(s)	92, 115, 178, 236
TfiI	GAWTC	2 cut(s)	107, 239
TseFI	GTSAC	2 cut(s)	76, 301
TseI	GCWGC	2 cut(s)	213, 359
Tsp45I	GTSAC	2 cut(s)	76, 301
TspGWI	ACGGA	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	271, 316
XagI	CCTNNNNNAGG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.