FvH4_4g15980

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005475
Physical Location & Seq
Reverse (-)
19924956 .. 19926740
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15980.t2

Sequence Viewer

Length: 669 bp
ATGAGCACCACCGCCGCCGCCGCCGCTCTGCACTCGCCGTCTCTCATGGCCGCCCTCCTCCTCACCGCGATCTTCCTCTCTCTCGGTGCCGCCAAGTCAGCCAGAGGATCGCCGCCGTCCTCTTGCGCCGACGAGCTCGTCCGATTCTCGCCGTGCCTTTCCTACATGGCGTCGCCGCCGAACAACCTCTCCGACTCGCCGGCGTCCAAGTGCTGCGAAGCGTTCTCGTCGGCGGAGGAGTCCGGCAGCGCCGTTTGCCTCTGCTACCTGGTCCAGGATCCTCCGATGCTCGGCTTTCCGGTGACCGTTGCTCGCGTTCTCTCGCTCTCCTCCGTCTGCCCTCGCCGGAACTCCACCTCCGCTCCTTCCTCTTCTCTCAAGTCTCTTTGCTCAGAGGTGCCGGAGCTCCCTCCTCTCCGCAACAGAACGATTCCTGTGATTTCAGGTTCTCTTCCTTCTGGTTCTGAAACTGTTTCATCTCCTTCACCAAATCCAGCAAACAAGTCAATCACACAACCAAGCTTGTTGACTCCACCAAGCTCAGCAGTAGAACCAGCAAGAGGCTCAGTAGAACCACCAAGAGTGTCGGCAGCGGCGGCAATGAAGCGAATTTTCAAGAACAATACTCCTTGGTTTCTACCTGCCATATCGATGTTGGTACTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

223

Amino Acids

22.89

Weight (kDa)

8.69

Isoelectric Point (pI)

71.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 34 - 119 7.6e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 2 cut(s) 86, 397
AccBSI CCGCTC 2 cut(s) 26, 362
AccII CGCG 2 cut(s) 68, 315
AclWI GGATC 3 cut(s) 115, 272, 285
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 609
AcyI GRCGYC 2 cut(s) 170, 203
AfaI GTAC 1 cut(s) 660
AfiI CCNNNNNNNGG 3 cut(s) 274, 290, 560
AgsI TTSAA 1 cut(s) 616
AjnI CCWGG 2 cut(s) 267, 273
AloI GAACNNNNNNTCC 4 cut(s) 173, 205, 341, 373
AluBI AGCT 4 cut(s) 136, 406, 522, 540
AluI AGCT 4 cut(s) 136, 406, 522, 540
Alw21I GWGCWC 3 cut(s) 8, 138, 408
Alw26I GTCTC 2 cut(s) 45, 387
AlwI GGATC 3 cut(s) 115, 272, 285
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 213, 246, 590
ApoI RAATTY 1 cut(s) 609
AspLEI GCGC 2 cut(s) 128, 251
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 55, 313, 477
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 277
BanI GGYRCC 2 cut(s) 86, 397
BanII GRGCYC 2 cut(s) 138, 408
Bbv12I GWGCWC 3 cut(s) 8, 138, 408
BbvI GCAGC 3 cut(s) 200, 258, 602
BceAI ACGGC 4 cut(s) 22, 100, 136, 236
BciT130I CCWGG 2 cut(s) 269, 275
BcoDI GTCTC 2 cut(s) 45, 387
BfoI RGCGCY 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 649
BlpI GCTNAGC 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 269, 275
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 88, 279, 399
BmrFI CCNGG 2 cut(s) 269, 275
BmsI GCATC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 362
Bsa29I ATCGAT 1 cut(s) 650
BsaHI GRCGYC 2 cut(s) 170, 203
BsaJI CCNNGG 1 cut(s) 629
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 6 cut(s) 173, 203, 341, 346, 371, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 290, 560
Bse118I RCCGGY 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 269, 275
BseCI ATCGAT 1 cut(s) 650
BseDI CCNNGG 1 cut(s) 629
BseLI CCNNNNNNNGG 3 cut(s) 274, 290, 560
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 405, 555, 579
BseRI GAGGAG 5 cut(s) 47, 50, 251, 319, 402
BseXI GCAGC 3 cut(s) 200, 258, 602
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 2 cut(s) 68, 315
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 86, 397
BshVI ATCGAT 1 cut(s) 650
BsiHKAI GWGCWC 3 cut(s) 8, 138, 408
BsiSI CCGG 5 cut(s) 200, 243, 299, 346, 401
BslI CCNNNNNNNGG 3 cut(s) 274, 290, 560
BsmAI GTCTC 2 cut(s) 45, 387
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 8, 138, 408
Bsp143I GATC 3 cut(s) 69, 107, 277
Bsp1720I GCTNAGC 1 cut(s) 541
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 3 cut(s) 404, 554, 578
BspDI ATCGAT 1 cut(s) 650
BspFNI CGCG 2 cut(s) 68, 315
BspLI GGNNCC 3 cut(s) 88, 279, 399
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 3 cut(s) 115, 272, 285
BspT107I GGYRCC 2 cut(s) 86, 397
BsrBI CCGCTC 2 cut(s) 26, 362
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 3 cut(s) 69, 107, 277
BssNI GRCGYC 2 cut(s) 170, 203
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 2 cut(s) 269, 275
Bst4CI ACNGT 2 cut(s) 307, 472
Bst6I CTCTTC 2 cut(s) 376, 456
BstACI GRCGYC 2 cut(s) 170, 203
BstC8I GCNNGC 2 cut(s) 201, 313
BstDEI CTNAG 3 cut(s) 391, 541, 565
BstEII GGTNACC 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 272
BstFNI CGCG 2 cut(s) 68, 315
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 2 cut(s) 128, 251
BstKTI GATC 3 cut(s) 72, 110, 280
BstMAI GTCTC 2 cut(s) 45, 387
BstMBI GATC 3 cut(s) 69, 107, 277
BstMWI GCNNNNNNNGC 5 cut(s) 20, 23, 98, 255, 596
BstNI CCWGG 2 cut(s) 269, 275
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 267, 273
BstUI CGCG 2 cut(s) 68, 315
BstV1I GCAGC 3 cut(s) 200, 258, 602
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 650
BsuRI GGCC 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 650
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 2 cut(s) 201, 313
CfoI GCGC 2 cut(s) 128, 251
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 650
CseI GACGC 2 cut(s) 159, 192
CsiI ACCWGGT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 659
CviAII CATG 2 cut(s) 46, 166
CviJI RGCY 8 cut(s) 50, 101, 136, 294, 406, 522, 540, 564
CviKI_1 RGCY 8 cut(s) 50, 101, 136, 294, 406, 522, 540, 564
CviQI GTAC 1 cut(s) 659
DdeI CTNAG 3 cut(s) 391, 541, 565
DpnI GATC 3 cut(s) 71, 109, 279
DpnII GATC 3 cut(s) 69, 107, 277
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 376, 456
EarI CTCTTC 2 cut(s) 376, 456
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 136, 406
Eco130I CCWWGG 1 cut(s) 629
Eco24I GRGCYC 2 cut(s) 138, 408
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 2 cut(s) 136, 406
Eco91I GGTNACC 1 cut(s) 301
EcoICRI GAGCTC 2 cut(s) 136, 406
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 267, 273
EcoT14I CCWWGG 1 cut(s) 629
EcoT38I GRGCYC 2 cut(s) 138, 408
ErhI CCWWGG 1 cut(s) 629
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 49, 169
FaiI YATR 3 cut(s) 47, 167, 647
FatI CATG 2 cut(s) 45, 165
FriOI GRGCYC 2 cut(s) 138, 408
GlaI GCGC 2 cut(s) 127, 250
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 1 cut(s) 50
HapII CCGG 5 cut(s) 200, 243, 299, 346, 401
HgaI GACGC 2 cut(s) 159, 192
HhaI GCGC 2 cut(s) 128, 251
Hin1I GRCGYC 2 cut(s) 170, 203
Hin1II CATG 2 cut(s) 49, 169
Hin6I GCGC 2 cut(s) 126, 249
HinP1I GCGC 2 cut(s) 126, 249
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HindIII AAGCTT 1 cut(s) 520
HinfI GANTC 5 cut(s) 144, 194, 239, 430, 529
HpaII CCGG 5 cut(s) 200, 243, 299, 346, 401
HphI GGTGA 3 cut(s) 55, 313, 477
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 6 cut(s) 143, 193, 285, 394, 466, 668
Hpy188III TCNNGA 1 cut(s) 616
Hpy8I GTNNAC 1 cut(s) 528
Hpy99I CGWCG 3 cut(s) 134, 175, 232
HpyAV CCTTC 3 cut(s) 375, 465, 492
HpyCH4III ACNGT 2 cut(s) 307, 472
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 23, 98, 255, 596
HpyF3I CTNAG 3 cut(s) 391, 541, 565
Hsp92I GRCGYC 2 cut(s) 170, 203
Hsp92II CATG 2 cut(s) 49, 169
HspAI GCGC 2 cut(s) 126, 249
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 3 cut(s) 69, 107, 277
LmnI GCTCC 3 cut(s) 367, 403, 411
Lsp1109I GCAGC 3 cut(s) 200, 258, 602
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 71, 109, 279
MbiI CCGCTC 2 cut(s) 26, 362
MboI GATC 3 cut(s) 69, 107, 277
MboII GAAGA 3 cut(s) 64, 363, 443
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 3 cut(s) 8, 138, 408
MluCI AATT 1 cut(s) 609
MlyI GAGTC 3 cut(s) 188, 248, 523
MmeI TCCRAC 1 cut(s) 216
MreI CGCCGGCG 1 cut(s) 199
MroNI GCCGGC 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 5 cut(s) 200, 243, 299, 346, 401
MspR9I CCNGG 2 cut(s) 269, 275
MvaI CCWGG 2 cut(s) 269, 275
MvnI CGCG 2 cut(s) 68, 315
MwoI GCNNNNNNNGC 5 cut(s) 20, 23, 98, 255, 596
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 3 cut(s) 69, 107, 277
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 49, 169
NlaIV GGNNCC 3 cut(s) 88, 279, 399
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 144, 430
PfoI TCCNGGA 1 cut(s) 273
PleI GAGTC 3 cut(s) 188, 247, 523
PpsI GAGTC 3 cut(s) 188, 247, 523
Psp124BI GAGCTC 2 cut(s) 138, 408
Psp6I CCWGG 2 cut(s) 267, 273
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 2 cut(s) 267, 273
PspN4I GGNNCC 3 cut(s) 88, 279, 399
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 660
RsaNI GTAC 1 cut(s) 659
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 2 cut(s) 138, 408
Sau3AI GATC 3 cut(s) 69, 107, 277
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 3 cut(s) 188, 248, 523
ScrFI CCNGG 2 cut(s) 269, 275
SduI GDGCHC 3 cut(s) 8, 138, 408
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 1 cut(s) 276
SgrAI CRCCGGYG 1 cut(s) 199
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 1 cut(s) 609
SstI GAGCTC 2 cut(s) 138, 408
StyD4I CCNGG 2 cut(s) 267, 273
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 307, 472
TaqI TCGA 1 cut(s) 650
TasI AATT 1 cut(s) 609
TfiI GAWTC 2 cut(s) 144, 430
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 3 cut(s) 213, 246, 590
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 465, 617
TspGWI ACGGA 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.