Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Forward (+)

8984787 .. 8985995

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGAGGACTCTCCACAAAACCCGTTGCGATAATCATCGCAATTCTCACCGTCCACTTCTTATTCGCCGCCGTAACCTCCCAATCCTCCGGCGATTTCGTACCGATCGAGTCGAAATGCAACGGTACCATCGCCGAGTGCTCCTTATCCACGGCGGAGGAAGAGTTCGAGATGGACTCTGAGATCAACAGGCGTATTTTAGCAACAACGAAGTATATAAGCTACGGTGCGCTGAGGAGAAACACAGTTCCTTGCTCACGACGCGGCGCATCTTACTACAATTGCCGACGTGGAGCTCAGGCTAATCCTTACTCTCGTGGCTGTAGCGCTATTACTCGTTGCAGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009966 GO:0009987 GO:0010033 GO:0010469 GO:0010646 GO:0014070 GO:0019722 GO:0019932 GO:0022622 GO:0023051 GO:0023052 GO:0030054 GO:0030308 GO:0030312 GO:0030545 GO:0032501 GO:0032502 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0044464 GO:0045926 GO:0048018 GO:0048046 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

116

Amino Acids

12.81

Weight (kDa)

9.41

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	54 - 116	1.4e-30	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	69, 155, 264
AfaI	GTAC	2 cut(s)	102, 127
AfeI	AGCGCT	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	290
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	2 cut(s)	222, 296
AluI	AGCT	2 cut(s)	222, 296
Alw21I	GWGCWC	2 cut(s)	143, 298
Aor51HI	AGCGCT	1 cut(s)	328
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	232, 269, 329
AsuHPI	GGTGA	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	143, 298
BbvCI	CCTCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	137, 166
BceAI	ACGGC	2 cut(s)	56, 168
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	2 cut(s)	69, 265
BlsI	GCNGC	2 cut(s)	70, 266
BmgBI	CACGTC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bpu10I	CCTNAGC	2 cut(s)	233, 297
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	171, 224, 311
BseRI	GAGGAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	143, 298
BsiSI	CCGG	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	143, 298
Bsp143I	GATC	2 cut(s)	105, 183
BspACI	CCGC	3 cut(s)	69, 155, 264
BspCNI	CTCAG	3 cut(s)	172, 225, 310
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	105, 183
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst4CI	ACNGT	4 cut(s)	52, 125, 227, 247
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	180, 233, 297
BstDSI	CCRYGG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	232, 269, 329
BstKTI	GATC	2 cut(s)	108, 186
BstMBI	GATC	2 cut(s)	105, 183
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	2 cut(s)	22, 115
BtrI	CACGTC	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	3 cut(s)	232, 269, 329
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	101, 126
CviJI	RGCY	4 cut(s)	222, 296, 302, 321
CviKI_1	RGCY	4 cut(s)	222, 296, 302, 321
CviQI	GTAC	2 cut(s)	101, 126
DdeI	CTNAG	3 cut(s)	180, 233, 297
DpnI	GATC	2 cut(s)	107, 185
DpnII	GATC	2 cut(s)	105, 183
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	298
Eco47III	AGCGCT	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	298
FaiI	YATR	2 cut(s)	216, 218
Fnu4HI	GCNGC	2 cut(s)	69, 265
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	69, 265
GlaI	GCGC	3 cut(s)	231, 268, 328
GluI	GCNGC	2 cut(s)	69, 265
HaeII	RGCGCY	1 cut(s)	330
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	3 cut(s)	232, 269, 329
Hin6I	GCGC	3 cut(s)	230, 267, 327
HinP1I	GCGC	3 cut(s)	230, 267, 327
HinfI	GANTC	3 cut(s)	9, 110, 176
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	169, 258
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	2 cut(s)	264, 291
HpyCH4III	ACNGT	4 cut(s)	52, 125, 227, 247
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	120, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	3 cut(s)	180, 233, 297
HpySE526I	ACGT	1 cut(s)	289
HspAI	GCGC	3 cut(s)	230, 267, 327
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	105, 183
LmnI	GCTCC	2 cut(s)	146, 293
LpnPI	CCDG	4 cut(s)	103, 175, 284, 328
LweI	GCATC	1 cut(s)	278
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	107, 185
MboI	GATC	2 cut(s)	105, 183
MboII	GAAGA	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	143, 298
MluCI	AATT	2 cut(s)	42, 280
MlyI	GAGTC	3 cut(s)	3, 119, 170
MnlI	CCTC	4 cut(s)	88, 97, 151, 228
MspI	CCGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	2 cut(s)	105, 183
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 343
PkrI	GCNGC	2 cut(s)	70, 266
Ple19I	CGATCG	1 cut(s)	108
PleI	GAGTC	3 cut(s)	3, 118, 170
PpsI	GAGTC	3 cut(s)	3, 118, 170
Psp124BI	GAGCTC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	127
PvuI	CGATCG	1 cut(s)	108
RsaI	GTAC	2 cut(s)	102, 127
RsaNI	GTAC	2 cut(s)	101, 126
SacI	GAGCTC	1 cut(s)	298
SatI	GCNGC	2 cut(s)	69, 265
Sau3AI	GATC	2 cut(s)	105, 183
SchI	GAGTC	3 cut(s)	3, 119, 170
SduI	GDGCHC	2 cut(s)	143, 298
SetI	ASST	4 cut(s)	80, 224, 292, 298
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	42, 280
SsiI	CCGC	3 cut(s)	69, 155, 264
SstI	GAGCTC	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	52, 125, 227, 247
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	108, 113, 168
TasI	AATT	2 cut(s)	42, 280
TauI	GCSGC	2 cut(s)	71, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.