Rapid ALkalinization Factor (RALF)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15800 |
| fragaria_vesca | FvH4_4g18001 FvH4_6g06520 |
| malus_domestica | MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1 |
| prunus_persica | Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1 |
| pyrus_communis | pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250 |
| rosa_chinensis | RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211 |
| rosa_multiflora | Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110 |
| rosa_rugosa | Rorug03G0009000 Rorug04G0178800 |
| rosa_samantha | Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800 |
| rosa_wichuraiana | Rw3G005510 Rw4G020570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 118 |
| AciI | CCGC | 5 cut(s) | 66, 105, 108, 152, 188 |
| AcoI | YGGCCR | 3 cut(s) | 63, 90, 109 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 118 |
| AjnI | CCWGG | 1 cut(s) | 60 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 7, 39 |
| AluBI | AGCT | 4 cut(s) | 9, 118, 132, 170 |
| AluI | AGCT | 4 cut(s) | 9, 118, 132, 170 |
| AoxI | GGCC | 3 cut(s) | 63, 90, 109 |
| ApeKI | GCWGC | 1 cut(s) | 39 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 25 |
| BbvI | GCAGC | 1 cut(s) | 26 |
| BccI | CCATC | 1 cut(s) | 193 |
| BceAI | ACGGC | 1 cut(s) | 77 |
| BciT130I | CCWGG | 1 cut(s) | 62 |
| BfaI | CTAG | 1 cut(s) | 205 |
| BisI | GCNGC | 5 cut(s) | 40, 66, 106, 109, 153 |
| BlsI | GCNGC | 5 cut(s) | 41, 67, 107, 110, 154 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| BmsI | GCATC | 3 cut(s) | 51, 175, 183 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7, 37 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseBI | CCWGG | 1 cut(s) | 62 |
| BseGI | GGATG | 1 cut(s) | 190 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseX3I | CGGCCG | 1 cut(s) | 90 |
| BseXI | GCAGC | 1 cut(s) | 26 |
| BseYI | CCCAGC | 3 cut(s) | 118, 132, 155 |
| Bsh1285I | CGRYCG | 1 cut(s) | 93 |
| BshFI | GGCC | 3 cut(s) | 65, 92, 111 |
| BsiEI | CGRYCG | 1 cut(s) | 93 |
| BslFI | GGGAC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BsmFI | GGGAC | 1 cut(s) | 174 |
| BsnI | GGCC | 3 cut(s) | 65, 92, 111 |
| Bsp143I | GATC | 1 cut(s) | 146 |
| BspACI | CCGC | 5 cut(s) | 66, 105, 108, 152, 188 |
| BspANI | GGCC | 3 cut(s) | 65, 92, 111 |
| BssMI | GATC | 1 cut(s) | 146 |
| Bst2UI | CCWGG | 1 cut(s) | 62 |
| BstF5I | GGATG | 1 cut(s) | 190 |
| BstKTI | GATC | 1 cut(s) | 149 |
| BstMBI | GATC | 1 cut(s) | 146 |
| BstMCI | CGRYCG | 1 cut(s) | 93 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 129 |
| BstNI | CCWGG | 1 cut(s) | 62 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstV1I | GCAGC | 1 cut(s) | 26 |
| BstZI | CGGCCG | 1 cut(s) | 90 |
| BsuRI | GGCC | 3 cut(s) | 65, 92, 111 |
| BtsCI | GGATG | 1 cut(s) | 190 |
| CviJI | RGCY | 9 cut(s) | 9, 39, 65, 92, 111, 118, 132, 155, 170 |
| CviKI_1 | RGCY | 9 cut(s) | 9, 39, 65, 92, 111, 118, 132, 155, 170 |
| DpnI | GATC | 1 cut(s) | 148 |
| DpnII | GATC | 1 cut(s) | 146 |
| EaeI | YGGCCR | 3 cut(s) | 63, 90, 109 |
| EagI | CGGCCG | 1 cut(s) | 90 |
| EclXI | CGGCCG | 1 cut(s) | 90 |
| Eco52I | CGGCCG | 1 cut(s) | 90 |
| EcoRII | CCWGG | 1 cut(s) | 60 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 10, 42 |
| FaqI | GGGAC | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 5 cut(s) | 40, 66, 106, 109, 153 |
| FokI | GGATG | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 5 cut(s) | 40, 66, 106, 109, 153 |
| FspBI | CTAG | 1 cut(s) | 205 |
| GluI | GCNGC | 5 cut(s) | 40, 66, 106, 109, 153 |
| GsaI | CCCAGC | 3 cut(s) | 122, 136, 159 |
| HaeIII | GGCC | 3 cut(s) | 65, 92, 111 |
| Hpy188III | TCNNGA | 1 cut(s) | 12 |
| HpyAV | CCTTC | 1 cut(s) | 36 |
| HpyCH4V | TGCA | 2 cut(s) | 42, 56 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 129 |
| Kzo9I | GATC | 1 cut(s) | 146 |
| LpnPI | CCDG | 6 cut(s) | 47, 74, 104, 118, 128, 141 |
| Lsp1109I | GCAGC | 1 cut(s) | 26 |
| LweI | GCATC | 3 cut(s) | 51, 175, 183 |
| MaeI | CTAG | 1 cut(s) | 205 |
| MalI | GATC | 1 cut(s) | 148 |
| MboI | GATC | 1 cut(s) | 146 |
| MnlI | CCTC | 2 cut(s) | 169, 175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 25 |
| MseI | TTAA | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 118 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 62 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 129 |
| NdeII | GATC | 1 cut(s) | 146 |
| PdmI | GAANNNNTTC | 1 cut(s) | 25 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 118 |
| PkrI | GCNGC | 5 cut(s) | 41, 67, 107, 110, 154 |
| Psp6I | CCWGG | 1 cut(s) | 60 |
| PspFI | CCCAGC | 3 cut(s) | 118, 132, 155 |
| PspGI | CCWGG | 1 cut(s) | 60 |
| PvuII | CAGCTG | 1 cut(s) | 118 |
| SaqAI | TTAA | 1 cut(s) | 47 |
| SatI | GCNGC | 5 cut(s) | 40, 66, 106, 109, 153 |
| Sau3AI | GATC | 1 cut(s) | 146 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SetI | ASST | 4 cut(s) | 11, 120, 134, 172 |
| SfaNI | GCATC | 3 cut(s) | 51, 175, 183 |
| SmlI | CTYRAG | 1 cut(s) | 10 |
| SmoI | CTYRAG | 1 cut(s) | 10 |
| SsiI | CCGC | 5 cut(s) | 66, 105, 108, 152, 188 |
| SspMI | CTAG | 1 cut(s) | 205 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| TaqI | TCGA | 1 cut(s) | 140 |
| TauI | GCSGC | 4 cut(s) | 68, 108, 111, 155 |
| Tru1I | TTAA | 1 cut(s) | 47 |
| Tru9I | TTAA | 1 cut(s) | 47 |
| TseI | GCWGC | 1 cut(s) | 39 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 25 |
| XspI | CTAG | 1 cut(s) | 205 |