Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Reverse (-)

10748094 .. 10749234

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCCATAAAGTCATTGACATTCTTAAATTTGAAGCAAAATCAGTCATCTAAAGGTCAAGTGGCATGTTCCCGTAAATACTTCCCCAAACCAGTGGCATTTCCAAACCAACGGTCACTTATAATCCCAAACCCACCCCACAAACCTCTTCCTCTCAAAAACAAAATTCAGATTGGAAAACCCCCAAAAATGGGAAGCTCAAGCTCAAGAACACCGCCACTCTTTGCATTCATCTTCGCCTGCGCAATCTTGGCCGCTCATTTAGTACATGCTTCATCTGCAGCCGTCGATTTCAGCGGAGGCCACCAGCTGGACCAGCTGAGCTGGGTCTCCACAAGATCAGCGGGAGGGCTGATAGCTGAGGACGAGGATTTGGAGCTGCCGATGGAGTCCGAGATCAGCCGGCGCATCTTAGCCACGAACCGGTACATCAGCTACGGCGCGCTGAGGAGGAACACTGTCCCCTGCTCGCGACGTGGCGCGTCCTACTACAACTGCCGACCTGGAGCTCAGGCAAATCCCTACTCTCGCGGCTGTAGCAGAATAACTCGCTGCAGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

188

Amino Acids

20.61

Weight (kDa)

10.23

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	4 cut(s)	443, 472, 482, 531
AciI	CCGC	5 cut(s)	215, 255, 297, 344, 531
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	28, 165
AfaI	GTAC	2 cut(s)	267, 428
AfiI	CCNNNNNNNGG	4 cut(s)	190, 191, 310, 423
AgeI	ACCGGT	1 cut(s)	423
AgsI	TTSAA	1 cut(s)	34
AjiI	CACGTC	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	9 cut(s)	198, 204, 310, 319, 324, 359, 379, 435, 509
AluI	AGCT	9 cut(s)	198, 204, 310, 319, 324, 359, 379, 435, 509
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	252, 301
ApeKI	GCWGC	3 cut(s)	281, 379, 552
ApoI	RAATTY	2 cut(s)	28, 165
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AsiGI	ACCGGT	1 cut(s)	423
AspLEI	GCGC	5 cut(s)	245, 408, 443, 445, 482
AspS9I	GGNCC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	511
BbvCI	CCTCAGC	2 cut(s)	360, 446
BbvI	GCAGC	3 cut(s)	293, 366, 539
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	2 cut(s)	269, 454
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	3 cut(s)	279, 535, 553
BisI	GCNGC	5 cut(s)	255, 282, 380, 532, 553
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	5 cut(s)	256, 283, 381, 533, 554
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	3 cut(s)	360, 446, 510
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	184, 190
BsaI	GGTCTC	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 191, 310, 423
Bse118I	RCCGGY	2 cut(s)	402, 423
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	190, 191, 310, 423
BseMII	CTCAG	4 cut(s)	311, 351, 437, 524
BseNI	ACTGG	1 cut(s)	92
BsePI	GCGCGC	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	293, 366, 539
BseYI	CCCAGC	1 cut(s)	324
Bsh1236I	CGCG	4 cut(s)	443, 472, 482, 531
BshFI	GGCC	2 cut(s)	254, 303
BshTI	ACCGGT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	403, 424
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	4 cut(s)	190, 191, 310, 423
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	254, 303
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	338, 396
Bsp1720I	GCTNAGC	1 cut(s)	320
Bsp68I	TCGCGA	1 cut(s)	472
BspACI	CCGC	5 cut(s)	215, 255, 297, 344, 531
BspANI	GGCC	2 cut(s)	254, 303
BspCNI	CTCAG	4 cut(s)	312, 352, 438, 523
BspFNI	CGCG	4 cut(s)	443, 472, 482, 531
BspMAI	CTGCAG	2 cut(s)	283, 557
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	402, 423
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	2 cut(s)	402, 423
BssHII	GCGCGC	1 cut(s)	441
BssMI	GATC	2 cut(s)	338, 396
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	114, 460
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	5 cut(s)	241, 404, 443, 470, 557
BstDEI	CTNAG	5 cut(s)	320, 360, 412, 446, 510
BstFNI	CGCG	4 cut(s)	443, 472, 482, 531
BstHHI	GCGC	5 cut(s)	245, 408, 443, 445, 482
BstKTI	GATC	2 cut(s)	341, 399
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	338, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 278, 316, 537
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	2 cut(s)	69, 272
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	3 cut(s)	279, 535, 553
BstUI	CGCG	4 cut(s)	443, 472, 482, 531
BstV1I	GCAGC	3 cut(s)	293, 366, 539
BstXI	CCANNNNNNTGG	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	254, 303
BtrI	CACGTC	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	99, 456
BtuMI	TCGCGA	1 cut(s)	472
Cac8I	GCNNGC	5 cut(s)	241, 404, 443, 470, 557
CfoI	GCGC	5 cut(s)	245, 408, 443, 445, 482
Cfr10I	RCCGGY	2 cut(s)	402, 423
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	266, 427
CspAI	ACCGGT	1 cut(s)	423
CviAII	CATG	2 cut(s)	66, 269
CviQI	GTAC	2 cut(s)	266, 427
DdeI	CTNAG	5 cut(s)	320, 360, 412, 446, 510
DpnI	GATC	2 cut(s)	340, 398
DpnII	GATC	2 cut(s)	338, 396
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	2 cut(s)	69, 272
FaiI	YATR	4 cut(s)	8, 67, 122, 270
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	65, 268
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	255, 282, 380, 532, 553
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	5 cut(s)	255, 282, 380, 532, 553
FspI	TGCGCA	1 cut(s)	244
GlaI	GCGC	5 cut(s)	244, 407, 442, 444, 481
GluI	GCNGC	5 cut(s)	255, 282, 380, 532, 553
GsaI	CCCAGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	254, 303
HapII	CCGG	2 cut(s)	403, 424
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	5 cut(s)	245, 408, 443, 445, 482
Hin1II	CATG	2 cut(s)	69, 272
Hin6I	GCGC	5 cut(s)	243, 406, 441, 443, 480
HinP1I	GCGC	5 cut(s)	243, 406, 441, 443, 480
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	403, 424
Hpy188I	TCNGA	2 cut(s)	171, 394
Hpy188III	TCNNGA	2 cut(s)	207, 471
Hpy99I	CGWCG	2 cut(s)	290, 477
HpyCH4III	ACNGT	2 cut(s)	114, 460
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	3 cut(s)	227, 281, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 278, 316, 537
HpyF3I	CTNAG	5 cut(s)	320, 360, 412, 446, 510
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	69, 272
HspAI	GCGC	5 cut(s)	243, 406, 441, 443, 480
KroI	GCCGGC	1 cut(s)	402
KroNI	GCCGGC	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	338, 396
LmnI	GCTCC	2 cut(s)	376, 506
Lsp1109I	GCAGC	3 cut(s)	293, 366, 539
LweI	GCATC	1 cut(s)	417
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	340, 398
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	2 cut(s)	338, 396
MboII	GAAGA	2 cut(s)	140, 226
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	2 cut(s)	28, 165
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	8 cut(s)	156, 162, 293, 341, 355, 361, 441, 444
MroNI	GCCGGC	1 cut(s)	402
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	4 cut(s)	297, 310, 319, 344
MspI	CCGG	2 cut(s)	403, 424
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	4 cut(s)	443, 472, 482, 531
MwoI	GCNNNNNNNGC	4 cut(s)	251, 278, 316, 537
NaeI	GCCGGC	1 cut(s)	404
NdeII	GATC	2 cut(s)	338, 396
NgoMIV	GCCGGC	1 cut(s)	402
NlaIII	CATG	2 cut(s)	69, 272
NmuCI	GTSAC	1 cut(s)	114
NruI	TCGCGA	1 cut(s)	472
NsbI	TGCGCA	1 cut(s)	244
NspI	RCATGY	2 cut(s)	69, 272
PauI	GCGCGC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	5 cut(s)	256, 283, 381, 533, 554
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	2 cut(s)	283, 557
PteI	GCGCGC	1 cut(s)	441
PvuII	CAGCTG	2 cut(s)	310, 319
RruI	TCGCGA	1 cut(s)	472
RsaI	GTAC	2 cut(s)	267, 428
RsaNI	GTAC	2 cut(s)	266, 427
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	5 cut(s)	255, 282, 380, 532, 553
Sau3AI	GATC	2 cut(s)	338, 396
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	3 cut(s)	279, 535, 553
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	199, 205
SmoI	CTYRAG	2 cut(s)	199, 205
Sse9I	AATT	2 cut(s)	28, 165
SsiI	CCGC	5 cut(s)	215, 255, 297, 344, 531
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	114, 460
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	28, 165
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	2 cut(s)	257, 534
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	2 cut(s)	99, 463
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	3 cut(s)	281, 379, 552
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	220, 264
TspRI	CASTG	2 cut(s)	99, 463
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	2 cut(s)	28, 165
XceI	RCATGY	2 cut(s)	69, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.