Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Forward (+)

47915338 .. 47915997

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCATTTCCACTCCAACGGTCACATATATTCCCAGACCTGCCCTCACTTCTTCCTCTCTCTCTCTCTCAGATTAGAAACCCAAACATGGCAAGCACCTCACTGCTACTCTTCGGCTTCATCTTCCTCTGTTCAATCCTGGCCGCCCATTCCACTCTCGCCGCCGCTTCCACTTCCGCCGTCGATTTCAGCTGGGGCTCCTCCGGCGGAGGGCTGATAGGTGATTTGGATGAGGAGCTGGAGCTGCAGATGGACTCCGAGATCAACCGGCGCATCTTAGCCACCTCCAGGTACATTAGCTACGGTGCGCTGAGGAGGAACACTGTCCCCTGCTCGCGACGCGGCGCCTCGTACTACAATTGCCGTCCCGGAGCTCAGGCCAACCCCTACTCGCGCGGCTGTAGCCGCATCACTCGCTGCAGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

142

Amino Acids

15.57

Weight (kDa)

9.26

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	81 - 141	4.4e-29	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	344
AccII	CGCG	4 cut(s)	337, 342, 394, 396
AciI	CCGC	8 cut(s)	144, 162, 165, 177, 207, 342, 396, 406
AcoI	YGGCCR	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	2 cut(s)	293, 353
AfiI	CCNNNNNNNGG	3 cut(s)	88, 210, 288
AgsI	TTSAA	1 cut(s)	135
AjnI	CCWGG	2 cut(s)	138, 287
AluBI	AGCT	5 cut(s)	192, 238, 244, 300, 374
AluI	AGCT	5 cut(s)	192, 238, 244, 300, 374
Alw21I	GWGCWC	1 cut(s)	376
AoxI	GGCC	2 cut(s)	141, 378
ApeKI	GCWGC	2 cut(s)	244, 417
AspLEI	GCGC	4 cut(s)	273, 310, 347, 396
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	2 cut(s)	200, 376
Bbv12I	GWGCWC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	231, 404
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	2 cut(s)	164, 348
BciT130I	CCWGG	2 cut(s)	140, 289
BcnI	CCSGG	1 cut(s)	369
BfmI	CTRYAG	3 cut(s)	245, 400, 418
BfoI	RGCGCY	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	48
BisI	GCNGC	8 cut(s)	144, 162, 165, 245, 343, 397, 406, 418
BlsI	GCNGC	8 cut(s)	145, 163, 166, 246, 344, 398, 407, 419
Bme1390I	CCNGG	3 cut(s)	140, 289, 369
BmiI	GGNNCC	2 cut(s)	199, 346
BmrFI	CCNGG	3 cut(s)	140, 289, 369
BmsI	GCATC	2 cut(s)	282, 417
BpmI	CTGGAG	2 cut(s)	260, 271
Bpu10I	CCTNAGC	2 cut(s)	311, 375
BpuMI	CCSGG	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 210, 288
Bse118I	RCCGGY	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	140, 289
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	3 cut(s)	88, 210, 288
BseMII	CTCAG	3 cut(s)	83, 302, 389
BseRI	GAGGAG	3 cut(s)	190, 248, 328
BseXI	GCAGC	2 cut(s)	231, 404
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	4 cut(s)	337, 342, 394, 396
BshFI	GGCC	2 cut(s)	143, 380
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	204, 268, 369
BslFI	GGGAC	2 cut(s)	311, 351
BslI	CCNNNNNNNGG	3 cut(s)	88, 210, 288
BsmFI	GGGAC	2 cut(s)	311, 351
BsnI	GGCC	2 cut(s)	143, 380
Bsp1286I	GDGCHC	2 cut(s)	200, 376
Bsp143I	GATC	1 cut(s)	261
Bsp68I	TCGCGA	1 cut(s)	337
BspACI	CCGC	8 cut(s)	144, 162, 165, 177, 207, 342, 396, 406
BspANI	GGCC	2 cut(s)	143, 380
BspCNI	CTCAG	3 cut(s)	82, 303, 388
BspFNI	CGCG	4 cut(s)	337, 342, 394, 396
BspLI	GGNNCC	2 cut(s)	199, 346
BspMAI	CTGCAG	2 cut(s)	249, 422
BspMI	ACCTGC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	140, 289
Bst4CI	ACNGT	3 cut(s)	21, 305, 325
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	94, 335, 422
BstDEI	CTNAG	4 cut(s)	69, 277, 311, 375
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	4 cut(s)	337, 342, 394, 396
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	4 cut(s)	273, 310, 347, 396
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	6 cut(s)	204, 244, 339, 402, 405, 414
BstNI	CCWGG	2 cut(s)	140, 289
BstSCI	CCNGG	3 cut(s)	138, 287, 367
BstSFI	CTRYAG	3 cut(s)	245, 400, 418
BstUI	CGCG	4 cut(s)	337, 342, 394, 396
BstV1I	GCAGC	2 cut(s)	231, 404
BsuRI	GGCC	2 cut(s)	143, 380
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 321
BtuMI	TCGCGA	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	94, 335, 422
CfoI	GCGC	4 cut(s)	273, 310, 347, 396
Cfr10I	RCCGGY	1 cut(s)	267
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	292, 352
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	2 cut(s)	292, 352
DdeI	CTNAG	4 cut(s)	69, 277, 311, 375
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	2 cut(s)	166, 222
Ecl136II	GAGCTC	1 cut(s)	374
Eco24I	GRGCYC	2 cut(s)	200, 376
Eco53kI	GAGCTC	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	138, 287
EcoT38I	GRGCYC	2 cut(s)	200, 376
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	27, 29, 89
FaqI	GGGAC	2 cut(s)	311, 351
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	8 cut(s)	144, 162, 165, 245, 343, 397, 406, 418
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	200, 376
Fsp4HI	GCNGC	8 cut(s)	144, 162, 165, 245, 343, 397, 406, 418
GlaI	GCGC	4 cut(s)	272, 309, 346, 395
GluI	GCNGC	8 cut(s)	144, 162, 165, 245, 343, 397, 406, 418
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	2 cut(s)	260, 271
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	143, 380
HapII	CCGG	3 cut(s)	204, 268, 369
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	4 cut(s)	273, 310, 347, 396
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	4 cut(s)	271, 308, 345, 394
HinP1I	GCGC	4 cut(s)	271, 308, 345, 394
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	3 cut(s)	204, 268, 369
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	72, 259
Hpy188III	TCNNGA	1 cut(s)	336
Hpy99I	CGWCG	2 cut(s)	185, 342
HpyCH4III	ACNGT	3 cut(s)	21, 305, 325
HpyCH4V	TGCA	2 cut(s)	247, 420
HpyF10VI	GCNNNNNNNGC	6 cut(s)	204, 244, 339, 402, 405, 414
HpyF3I	CTNAG	4 cut(s)	69, 277, 311, 375
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	4 cut(s)	271, 308, 345, 394
KasI	GGCGCC	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	203, 235, 241, 371
Lsp1109I	GCAGC	2 cut(s)	231, 404
LweI	GCATC	2 cut(s)	282, 417
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	44, 103, 115
MfeI	CAATTG	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	200, 376
MluCI	AATT	1 cut(s)	358
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	3 cut(s)	204, 268, 369
MspR9I	CCNGG	3 cut(s)	140, 289, 369
MunI	CAATTG	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	140, 289
MvnI	CGCG	4 cut(s)	337, 342, 394, 396
MwoI	GCNNNNNNNGC	6 cut(s)	204, 244, 339, 402, 405, 414
NarI	GGCGCC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	199, 346
NmuCI	GTSAC	1 cut(s)	21
NruI	TCGCGA	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	8 cut(s)	145, 163, 166, 246, 344, 398, 407, 419
PleI	GAGTC	1 cut(s)	248
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	138, 287
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	2 cut(s)	138, 287
PspN4I	GGNNCC	2 cut(s)	199, 346
PstI	CTGCAG	2 cut(s)	249, 422
PvuII	CAGCTG	1 cut(s)	192
RruI	TCGCGA	1 cut(s)	337
RsaI	GTAC	2 cut(s)	293, 353
RsaNI	GTAC	2 cut(s)	292, 352
SacI	GAGCTC	1 cut(s)	376
SatI	GCNGC	8 cut(s)	144, 162, 165, 245, 343, 397, 406, 418
Sau3AI	GATC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	140, 289, 369
SduI	GDGCHC	2 cut(s)	200, 376
SfaNI	GCATC	2 cut(s)	282, 417
SfcI	CTRYAG	3 cut(s)	245, 400, 418
SfoI	GGCGCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	8 cut(s)	144, 162, 165, 177, 207, 342, 396, 406
SspDI	GGCGCC	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	376
StyD4I	CCNGG	3 cut(s)	138, 287, 367
TaaI	ACNGT	3 cut(s)	21, 305, 325
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	358
TauI	GCSGC	6 cut(s)	146, 164, 167, 345, 399, 408
TscAI	CASTG	2 cut(s)	108, 328
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	244, 417
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	108, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.