Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Reverse (-)

10261593 .. 10261829

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGAAGCTCAAGCTCAAGAACTCCATCACTCTTTGCCTGCATCTTCATCTGCGCAATCATGGCCGCCCATTTGGTAGTGATTGCTTCGGCTTCGGCCGTTGATTTCAGCGGCGGCCACCAGCTGGGTGAGCTGAGCTGGGGTTCGGCGCGATCGGCGGCGGGGGGACTGATAGCTGACGAGGACGAGGATGCGGAGATGCAGATGGACTCGGATCGATCAACCGGCGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

79

Amino Acids

7.91

Weight (kDa)

4.23

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccII	CGCG	1 cut(s)	151
AciI	CCGC	6 cut(s)	66, 111, 114, 158, 161, 194
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	3 cut(s)	63, 96, 115
AfiI	CCNNNNNNNGG	1 cut(s)	124
AluBI	AGCT	6 cut(s)	9, 15, 124, 133, 138, 176
AluI	AGCT	6 cut(s)	9, 15, 124, 133, 138, 176
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	3 cut(s)	63, 96, 115
AspLEI	GCGC	3 cut(s)	56, 151, 230
AsuHPI	GGTGA	1 cut(s)	140
BccI	CCATC	2 cut(s)	34, 199
BceAI	ACGGC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	66, 112, 115, 159
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	4 cut(s)	67, 113, 116, 160
BmsI	GCATC	3 cut(s)	51, 181, 189
Bpu1102I	GCTNAGC	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	217
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	125
BseX3I	CGGCCG	1 cut(s)	96
BseYI	CCCAGC	2 cut(s)	124, 138
Bsh1236I	CGCG	1 cut(s)	151
Bsh1285I	CGRYCG	2 cut(s)	99, 155
BshFI	GGCC	3 cut(s)	65, 98, 117
BshVI	ATCGAT	1 cut(s)	217
BsiEI	CGRYCG	2 cut(s)	99, 155
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	65, 98, 117
Bsp143I	GATC	3 cut(s)	152, 214, 218
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	6 cut(s)	66, 111, 114, 158, 161, 194
BspANI	GGCC	3 cut(s)	65, 98, 117
BspCNI	CTCAG	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	3 cut(s)	152, 214, 218
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	134, 234
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	3 cut(s)	56, 151, 230
BstKTI	GATC	3 cut(s)	155, 217, 221
BstMBI	GATC	3 cut(s)	152, 214, 218
BstMCI	CGRYCG	2 cut(s)	99, 155
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 130, 155
BstUI	CGCG	1 cut(s)	151
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	65, 98, 117
BsuTUI	ATCGAT	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	3 cut(s)	56, 151, 230
Cfr10I	RCCGGY	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	217
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	134, 234
DpnI	GATC	3 cut(s)	154, 216, 220
DpnII	GATC	3 cut(s)	152, 214, 218
EaeI	YGGCCR	3 cut(s)	63, 96, 115
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	96
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	66, 112, 115, 159
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	66, 112, 115, 159
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	3 cut(s)	55, 150, 229
GluI	GCNGC	4 cut(s)	66, 112, 115, 159
GsaI	CCCAGC	2 cut(s)	128, 142
HaeIII	GGCC	3 cut(s)	65, 98, 117
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	3 cut(s)	56, 151, 230
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	3 cut(s)	54, 149, 228
HinP1I	GCGC	3 cut(s)	54, 149, 228
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	42, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 130, 155
HpyF3I	CTNAG	2 cut(s)	134, 234
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	3 cut(s)	54, 149, 228
Kzo9I	GATC	3 cut(s)	152, 214, 218
LpnPI	CCDG	4 cut(s)	52, 110, 124, 134
LweI	GCATC	3 cut(s)	51, 181, 189
MalI	GATC	3 cut(s)	154, 216, 220
MboI	GATC	3 cut(s)	152, 214, 218
MboII	GAAGA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	175, 181
MspA1I	CMGCKG	2 cut(s)	111, 124
MspI	CCGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	62, 130, 155
NdeII	GATC	3 cut(s)	152, 214, 218
NlaIII	CATG	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	67, 113, 116, 160
Ple19I	CGATCG	1 cut(s)	155
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspFI	CCCAGC	2 cut(s)	124, 138
PvuI	CGATCG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	124
SatI	GCNGC	4 cut(s)	66, 112, 115, 159
Sau3AI	GATC	3 cut(s)	152, 214, 218
SchI	GAGTC	1 cut(s)	203
SetI	ASST	6 cut(s)	11, 17, 126, 135, 140, 178
SfaNI	GCATC	3 cut(s)	51, 181, 189
SmlI	CTYRAG	2 cut(s)	10, 16
SmoI	CTYRAG	2 cut(s)	10, 16
SsiI	CCGC	6 cut(s)	66, 111, 114, 158, 161, 194
TaqI	TCGA	1 cut(s)	217
TauI	GCSGC	4 cut(s)	68, 114, 117, 161
TspDTI	ATGAA	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.