Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002883.1

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Forward (+)

34046 .. 34375

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002883.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggccaagttactatacgctgtagccatcctcctgatctgggccacaatctctctcatggcttcatcttccactgttgaagcaagtggagaccttccgtggatacccaccaccgccaccggcttagtctccgggaacgatgagttcgaccttgactcggagatcaaccggcgcatcttagccaccagcggctacatcagctacggtgcactgcagaggaacactgtcccctgctccaggcgcggcgcctcctactacaattgccagcctggggcccaggccaacccctatagccgcggctgcagcgccatcacaaggtgcaggagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

109

Amino Acids

11.7

Weight (kDa)

8.43

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	2 cut(s)	243, 297
AciI	CCGC	5 cut(s)	114, 189, 243, 295, 297
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	318
AfiI	CCNNNNNNNGG	5 cut(s)	40, 157, 237, 271, 315
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	3 cut(s)	236, 268, 276
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	84, 133
Alw44I	GTGCAC	1 cut(s)	207
AoxI	GGCC	4 cut(s)	3, 42, 273, 279
ApaI	GGGCCC	1 cut(s)	277
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	300, 303
AspLEI	GCGC	4 cut(s)	174, 243, 248, 308
AspS9I	GGNCC	3 cut(s)	42, 273, 274
AsuC2I	CCSGG	1 cut(s)	133
BaeGI	GKGCMC	2 cut(s)	211, 277
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	287, 315
BccI	CCATC	2 cut(s)	35, 317
BciT130I	CCWGG	3 cut(s)	238, 270, 278
BciVI	GTATCC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	84, 133
BfmI	CTRYAG	4 cut(s)	21, 212, 289, 301
BfoI	RGCGCY	2 cut(s)	249, 309
BfuI	GTATCC	1 cut(s)	96
BisI	GCNGC	6 cut(s)	190, 244, 295, 298, 301, 304
BlsI	GCNGC	6 cut(s)	191, 245, 296, 299, 302, 305
Bme1390I	CCNGG	4 cut(s)	133, 238, 270, 278
BmgT120I	GGNCC	3 cut(s)	42, 273, 274
BmiI	GGNNCC	3 cut(s)	247, 274, 275
BmrFI	CCNGG	4 cut(s)	133, 238, 270, 278
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	98, 269, 276, 295
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 157, 237, 271, 315
Bse118I	RCCGGY	2 cut(s)	119, 168
BseBI	CCWGG	3 cut(s)	238, 270, 278
BseDI	CCNNGG	4 cut(s)	98, 269, 276, 295
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	5 cut(s)	40, 157, 237, 271, 315
BseSI	GKGCMC	2 cut(s)	211, 277
BseXI	GCAGC	2 cut(s)	287, 315
Bsh1236I	CGCG	2 cut(s)	243, 297
BshFI	GGCC	4 cut(s)	5, 44, 275, 281
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	120, 132, 169
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	5 cut(s)	40, 157, 237, 271, 315
BsmAI	GTCTC	2 cut(s)	84, 133
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	5, 44, 275, 281
Bso31I	GGTCTC	1 cut(s)	84
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	211, 277
Bsp143I	GATC	2 cut(s)	36, 162
BspACI	CCGC	5 cut(s)	114, 189, 243, 295, 297
BspANI	GGCC	4 cut(s)	5, 44, 275, 281
BspFNI	CGCG	2 cut(s)	243, 297
BspLI	GGNNCC	3 cut(s)	247, 274, 275
BspMAI	CTGCAG	2 cut(s)	216, 305
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	84
BsrFI	RCCGGY	2 cut(s)	119, 168
BssAI	RCCGGY	2 cut(s)	119, 168
BssECI	CCNNGG	4 cut(s)	98, 269, 276, 295
BssMI	GATC	2 cut(s)	36, 162
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	238, 270, 278
Bst4CI	ACNGT	3 cut(s)	76, 206, 226
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	124, 178
BstDSI	CCRYGG	2 cut(s)	98, 295
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	243, 297
BstH2I	RGCGCY	2 cut(s)	249, 309
BstHHI	GCGC	4 cut(s)	174, 243, 248, 308
BstKTI	GATC	2 cut(s)	39, 165
BstMAI	GTCTC	2 cut(s)	84, 133
BstMBI	GATC	2 cut(s)	36, 162
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 240, 300, 303
BstNI	CCWGG	3 cut(s)	238, 270, 278
BstSCI	CCNGG	4 cut(s)	131, 236, 268, 276
BstSFI	CTRYAG	4 cut(s)	21, 212, 289, 301
BstSLI	GKGCMC	2 cut(s)	211, 277
BstUI	CGCG	2 cut(s)	243, 297
BstV1I	GCAGC	2 cut(s)	287, 315
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	5, 44, 275, 281
BtgI	CCRYGG	2 cut(s)	98, 295
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	72, 209, 222
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	4 cut(s)	174, 243, 248, 308
Cfr10I	RCCGGY	2 cut(s)	119, 168
Cfr13I	GGNCC	3 cut(s)	42, 273, 274
Cfr42I	CCGCGG	1 cut(s)	298
CviAII	CATG	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	124, 178
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	2 cut(s)	38, 164
DpnII	GATC	2 cut(s)	36, 162
DraIII	CACNNNGTG	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	3 cut(s)	236, 268, 276
EcoT38I	GRGCYC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	16, 59, 291
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	6 cut(s)	190, 244, 295, 298, 301, 304
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	6 cut(s)	190, 244, 295, 298, 301, 304
GlaI	GCGC	4 cut(s)	173, 242, 247, 307
GluI	GCNGC	6 cut(s)	190, 244, 295, 298, 301, 304
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	2 cut(s)	249, 309
HaeIII	GGCC	4 cut(s)	5, 44, 275, 281
HapII	CCGG	3 cut(s)	120, 132, 169
HhaI	GCGC	4 cut(s)	174, 243, 248, 308
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	4 cut(s)	172, 241, 246, 306
HinP1I	GCGC	4 cut(s)	172, 241, 246, 306
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	3 cut(s)	120, 132, 169
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	3 cut(s)	76, 206, 226
HpyCH4V	TGCA	4 cut(s)	209, 214, 303, 321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 240, 300, 303
HpyF3I	CTNAG	2 cut(s)	124, 178
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	4 cut(s)	172, 241, 246, 306
KasI	GGCGCC	1 cut(s)	245
KspI	CCGCGG	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	36, 162
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	2 cut(s)	287, 315
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	38, 164
MboI	GATC	2 cut(s)	36, 162
MboII	GAAGA	1 cut(s)	60
MfeI	CAATTG	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	211, 277
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	259
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	41, 210, 259
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	189, 297
MspI	CCGG	3 cut(s)	120, 132, 169
MspR9I	CCNGG	4 cut(s)	133, 238, 270, 278
MteI	GCGCNGCGC	1 cut(s)	244
MunI	CAATTG	1 cut(s)	259
MvaI	CCWGG	3 cut(s)	238, 270, 278
MvnI	CGCG	2 cut(s)	243, 297
MwoI	GCNNNNNNNGC	4 cut(s)	198, 240, 300, 303
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	36, 162
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	247, 274, 275
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	6 cut(s)	191, 245, 296, 299, 302, 305
PleI	GAGTC	1 cut(s)	149
PluTI	GGCGCC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	236, 268, 276
PspGI	CCWGG	3 cut(s)	236, 268, 276
PspN4I	GGNNCC	3 cut(s)	247, 274, 275
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	3 cut(s)	42, 273, 274
PstI	CTGCAG	2 cut(s)	216, 305
SacII	CCGCGG	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	6 cut(s)	190, 244, 295, 298, 301, 304
Sau3AI	GATC	2 cut(s)	36, 162
Sau96I	GGNCC	3 cut(s)	42, 273, 274
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	4 cut(s)	133, 238, 270, 278
SduI	GDGCHC	2 cut(s)	211, 277
SetI	ASST	4 cut(s)	96, 153, 203, 320
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	4 cut(s)	21, 212, 289, 301
SfoI	GGCGCC	1 cut(s)	247
Sfr303I	CCGCGG	1 cut(s)	298
SgrBI	CCGCGG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	5 cut(s)	114, 189, 243, 295, 297
SspDI	GGCGCC	1 cut(s)	245
StyD4I	CCNGG	4 cut(s)	131, 236, 268, 276
TaaI	ACNGT	3 cut(s)	76, 206, 226
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	259
TauI	GCSGC	4 cut(s)	192, 246, 297, 300
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TscAI	CASTG	3 cut(s)	79, 216, 229
TseI	GCWGC	2 cut(s)	300, 303
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	79, 216, 229
VneI	GTGCAC	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.