Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004612

Physical Location & Seq

Genomic Coordinates Reverse (-)

28397216 .. 28397943

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G321200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTAGGCTATGCTGTGTCTCATTCCTCCTCCTGATCTGCGCCTCAATCTTGTTGATGGGTTCATCATCTTCTGTTATAGCAAGTGGGGACCACCACCCGAACCTTTCATGGATGCCCACCAACAACTCAGCCTGCAAGGGCTCCATAGCAGAGTGCTTGGCTGCAGGGGATGAGGAGTTTGACTTGGACTCTGAGATCAACCGGCGCATCTTAGCCACCAGCAAGTACATCAGCTACGGTGCGATGCAGAGGAACACTGTGCCTTGCTCAAGGCGTGGCGCCTCCTACTACAATTGCCAGCCGGGAGCTCAGTCCAACCCCTACAGCCGCGGCTGCAGCGCCATCACAAGGTGCAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

122

Amino Acids

13.05

Weight (kDa)

8.42

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15800
fragaria_vesca	FvH4_4g18001 FvH4_6g06520
malus_domestica	MD03G1171400.v1.1 MD04G1201100.v1.1 MD12G1213600.v1.1 MD13G1168800.v1.1 MD16G1169200.v1.1
prunus_persica	Prupe.1G137000_v2.0.a1 Prupe.6G321200_v2.0.a1
pyrus_communis	pycom12g19950 pycom13g14440 pycom16g14230 pycom16g14250
rosa_chinensis	RchiOBHm_Chr3g0455671 RchiOBHm_Chr4g0422211
rosa_multiflora	Rmu_sc0002883.1_g000009 Rmu_sc0014362.1_g000002 Rmu_sc0026117.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364330 Rroxscaffold_6G00423610 Rroxscaffold_6G00424110
rosa_rugosa	Rorug03G0009000 Rorug04G0178800
rosa_samantha	Rh3AG068700 Rh3BG071200 Rh3CG069500 Rh3DG071100 Rh4CG252800
rosa_wichuraiana	Rw3G005510 Rw4G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	333
AciI	CCGC	2 cut(s)	331, 333
AcyI	GRCGYC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	351
AluBI	AGCT	2 cut(s)	237, 311
AluI	AGCT	2 cut(s)	237, 311
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	164, 336, 339
AspLEI	GCGC	4 cut(s)	44, 210, 284, 344
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	146, 313
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	151, 323, 351
BccI	CCATC	2 cut(s)	52, 353
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	3 cut(s)	165, 325, 337
BfoI	RGCGCY	2 cut(s)	285, 345
BisI	GCNGC	5 cut(s)	165, 331, 334, 337, 340
BlsI	GCNGC	5 cut(s)	166, 332, 335, 338, 341
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	3 cut(s)	92, 145, 283
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	105, 219, 237
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	120, 178
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	144, 186, 326
BseRI	GAGGAG	2 cut(s)	20, 191
BseXI	GCAGC	3 cut(s)	151, 323, 351
Bsh1236I	CGCG	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	205, 305
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	146, 313
Bsp143I	GATC	2 cut(s)	36, 198
BspACI	CCGC	2 cut(s)	331, 333
BspCNI	CTCAG	3 cut(s)	143, 187, 325
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	92, 145, 283
BspMAI	CTGCAG	2 cut(s)	169, 341
BspT107I	GGYRCC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	2 cut(s)	36, 198
BssNI	GRCGYC	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	242, 262
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	136, 302
BstDEI	CTNAG	4 cut(s)	130, 195, 214, 312
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	120, 178
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	2 cut(s)	285, 345
BstHHI	GCGC	4 cut(s)	44, 210, 284, 344
BstKTI	GATC	2 cut(s)	39, 201
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	36, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 339
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	3 cut(s)	165, 325, 337
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	151, 323, 351
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	120, 178
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	136, 302
CfoI	GCGC	4 cut(s)	44, 210, 284, 344
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	91
Cfr42I	CCGCGG	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	111
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	4 cut(s)	130, 195, 214, 312
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	2 cut(s)	38, 200
DpnII	GATC	2 cut(s)	36, 198
DraIII	CACNNNGTG	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	146, 313
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	146, 313
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
FaeI	CATG	1 cut(s)	114
FaiI	YATR	4 cut(s)	13, 80, 112, 149
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	1 cut(s)	110
Fnu4HI	GCNGC	5 cut(s)	165, 331, 334, 337, 340
FokI	GGATG	2 cut(s)	127, 185
FriOI	GRGCYC	2 cut(s)	146, 313
Fsp4HI	GCNGC	5 cut(s)	165, 331, 334, 337, 340
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	4 cut(s)	43, 209, 283, 343
GluI	GCNGC	5 cut(s)	165, 331, 334, 337, 340
HaeII	RGCGCY	2 cut(s)	285, 345
HapII	CCGG	2 cut(s)	205, 305
HhaI	GCGC	4 cut(s)	44, 210, 284, 344
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	114
Hin6I	GCGC	4 cut(s)	42, 208, 282, 342
HinP1I	GCGC	4 cut(s)	42, 208, 282, 342
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	205, 305
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	242, 262
HpyCH4V	TGCA	5 cut(s)	138, 167, 250, 339, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 339
HpyF3I	CTNAG	4 cut(s)	130, 195, 214, 312
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	114
HspAI	GCGC	4 cut(s)	42, 208, 282, 342
KasI	GGCGCC	1 cut(s)	281
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	36, 198
LmnI	GCTCC	2 cut(s)	149, 308
LpnPI	CCDG	8 cut(s)	47, 148, 153, 218, 235, 314, 318, 343
Lsp1109I	GCAGC	3 cut(s)	151, 323, 351
LweI	GCATC	3 cut(s)	105, 219, 237
MaeI	CTAG	1 cut(s)	6
MalI	GATC	2 cut(s)	38, 200
MboI	GATC	2 cut(s)	36, 198
MboII	GAAGA	1 cut(s)	63
MfeI	CAATTG	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	146, 313
MluCI	AATT	1 cut(s)	295
Mly113I	GGCGCC	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	38, 41, 55, 169, 246, 295
MseI	TTAA	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	2 cut(s)	205, 305
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	336, 339
NarI	GGCGCC	1 cut(s)	282
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	2 cut(s)	36, 198
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	3 cut(s)	92, 145, 283
PkrI	GCNGC	5 cut(s)	166, 332, 335, 338, 341
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	92, 145, 283
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	2 cut(s)	169, 341
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	5 cut(s)	165, 331, 334, 337, 340
Sau3AI	GATC	2 cut(s)	36, 198
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	146, 313
SetI	ASST	4 cut(s)	108, 239, 313, 356
SfaNI	GCATC	3 cut(s)	105, 219, 237
SfcI	CTRYAG	3 cut(s)	165, 325, 337
SfoI	GGCGCC	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	2 cut(s)	331, 333
SspDI	GGCGCC	1 cut(s)	281
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	242, 262
TasI	AATT	1 cut(s)	295
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	2 cut(s)	333, 336
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	3 cut(s)	164, 336, 339
TspDTI	ATGAA	2 cut(s)	54, 99
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	91
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.