Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

9036169 .. 9038075

Gene Structure 1907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGTGACGGGAGGAGGAAGAAGAGCGTGAACGGAGGTGCACCGGCGCAAACAATCTTGGATGATCGGAGATCTAGTCTTCCGGAAGTTGAAGCTTCTCCACCGGCTGGGAAACGAGCTGTTATCAAGAGTGCCGATATGAAAGATGATATGCAAAAGGAAGCTATCGAAATCGCCATCTCCGCGTTTGAGAAGTACAGTGTGGAGAAGGATATAGCTGAGAATATAAAGAAGGAGTTTGACAAGAAACATGGTGCTACTTGGCATTGCATTGTTGGTCGCAACTTTGGTTCTTATGTAACGCATGAGACAAACCATTTCGTTTACTTCTACCTCGACCAGAAAGCTGTGCTGCTCTTCAAGTCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

123

Amino Acids

13.79

Weight (kDa)

8.63

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	40 - 122	1.4e-39	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	92, 361
AluBI	AGCT	5 cut(s)	95, 119, 164, 218, 347
AluI	AGCT	5 cut(s)	95, 119, 164, 218, 347
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	302
Alw44I	GTGCAC	1 cut(s)	39
Aor13HI	TCCGGA	1 cut(s)	82
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	2 cut(s)	43, 103
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	82
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	44, 83, 104
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	64, 71
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	185
BspQI	GCTCTTC	2 cut(s)	17, 362
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	43, 103
BssAI	RCCGGY	2 cut(s)	43, 103
BssMI	GATC	2 cut(s)	64, 71
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	2 cut(s)	17, 362
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	67, 74
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	2 cut(s)	64, 71
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	2 cut(s)	43, 103
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	2 cut(s)	251, 305
CviJI	RGCY	6 cut(s)	95, 107, 119, 164, 218, 347
CviKI_1	RGCY	6 cut(s)	95, 107, 119, 164, 218, 347
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	66, 73
DpnII	GATC	2 cut(s)	64, 71
Eam1104I	CTCTTC	2 cut(s)	17, 362
EarI	CTCTTC	2 cut(s)	17, 362
FaeI	CATG	2 cut(s)	254, 308
FaiI	YATR	7 cut(s)	140, 152, 215, 227, 252, 297, 306
FatI	CATG	2 cut(s)	250, 304
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	353
GsaI	CCCAGC	1 cut(s)	111
HapII	CCGG	3 cut(s)	44, 83, 104
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	254, 308
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	93
HpaII	CCGG	3 cut(s)	44, 83, 104
Hpy166II	GTNNAC	3 cut(s)	31, 41, 325
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	83, 127
Hpy8I	GTNNAC	3 cut(s)	31, 41, 325
HpyAV	CCTTC	2 cut(s)	202, 226
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	41, 154, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	254, 308
HspAI	GCGC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	64, 71
LguI	GCTCTTC	2 cut(s)	17, 362
LpnPI	CCDG	5 cut(s)	57, 93, 96, 117, 353
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	5, 298
MalI	GATC	2 cut(s)	66, 73
MboI	GATC	2 cut(s)	64, 71
MboII	GAAGA	4 cut(s)	31, 34, 71, 349
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	43
MnlI	CCTC	4 cut(s)	6, 9, 29, 344
MroI	TCCGGA	1 cut(s)	82
MseI	TTAA	1 cut(s)	370
MspI	CCGG	3 cut(s)	44, 83, 104
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	2 cut(s)	64, 71
NlaIII	CATG	2 cut(s)	254, 308
NmuCI	GTSAC	1 cut(s)	5
PciSI	GCTCTTC	2 cut(s)	17, 362
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SapI	GCTCTTC	2 cut(s)	17, 362
SaqAI	TTAA	1 cut(s)	370
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	64, 71
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	7 cut(s)	40, 97, 121, 166, 220, 336, 349
SgrAI	CRCCGGYG	1 cut(s)	43
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	168, 336
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.