Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

13839155 .. 13842004

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1166100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGCGAAGACGCAAAGAGAAGCGTCGCCGGAGCTTTGTCGGCGAAGCCCAATTCCGACGACCGGAAACCATCCTCGGCTGTCACAACTCCCACAGGCAAGCGCGTCATCATCAAGAGCGCCGACATGTTCCAGGATATGCAGAAGGAGGCCGTCGACATCGCCATCGGGGCATTTGAGAAGCACAGCGTGGAGAAGGACGTTGCCGAGTATATAAAGAAGGAGTTCGATAAGAAGCATGGACCCACTTGGCATTGCATTGTTGGCCGTAATTTTGGTTCGTATGTGACTCATGAAACAAACCACTTTGTCTACTTCTACTTGGATCAGAAAGCAGTTTTGCTATTTAAGTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

8.63

Isoelectric Point (pI)

17.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	36 - 118	9.8e-39	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	156, 312
AccII	CGCG	1 cut(s)	105
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	2 cut(s)	150, 265
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	105, 122
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	2 cut(s)	79, 173
BceAI	ACGGC	2 cut(s)	137, 252
BciT130I	CCWGG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	152, 267
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	30, 64
BslI	CCNNNNNNNGG	1 cut(s)	63
BsnI	GGCC	2 cut(s)	152, 267
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	152, 267
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	105, 122
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 170, 264
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	152, 267
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	101
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	2 cut(s)	105, 122
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	3 cut(s)	13, 20, 94
CviAII	CATG	3 cut(s)	127, 239, 293
CviJI	RGCY	5 cut(s)	35, 49, 80, 152, 267
CviKI_1	RGCY	5 cut(s)	35, 49, 80, 152, 267
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraIII	CACNNNGTG	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	130, 242, 296
FaiI	YATR	7 cut(s)	128, 140, 213, 215, 240, 285, 294
FatI	CATG	3 cut(s)	126, 238, 292
FblI	GTMKAC	2 cut(s)	156, 312
FokI	GGATG	1 cut(s)	58
GlaI	GCGC	2 cut(s)	104, 121
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	152, 267
HapII	CCGG	2 cut(s)	30, 64
HgaI	GACGC	3 cut(s)	13, 20, 94
HhaI	GCGC	2 cut(s)	105, 122
Hin1II	CATG	3 cut(s)	130, 242, 296
Hin6I	GCGC	2 cut(s)	103, 120
HinP1I	GCGC	2 cut(s)	103, 120
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	30, 64
Hpy166II	GTNNAC	2 cut(s)	157, 313
Hpy188I	TCNGA	2 cut(s)	58, 330
Hpy188III	TCNNGA	2 cut(s)	115, 293
Hpy8I	GTNNAC	2 cut(s)	157, 313
Hpy99I	CGWCG	3 cut(s)	29, 62, 158
HpyAV	CCTTC	3 cut(s)	139, 190, 214
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	142, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 170, 264
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	130, 242, 296
HspAI	GCGC	2 cut(s)	103, 120
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	6 cut(s)	43, 77, 81, 119, 146, 339
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	82, 286
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	2 cut(s)	52, 271
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	85, 142
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	1 cut(s)	348
MspI	CCGG	2 cut(s)	30, 64
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	41, 170, 264
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	130, 242, 296
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	2 cut(s)	56, 232
NmuCI	GTSAC	2 cut(s)	82, 286
NspI	RCATGY	1 cut(s)	130
PagI	TCATGA	1 cut(s)	292
PciI	ACATGT	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	262, 294
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	2 cut(s)	37, 204
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	52, 271
StyD4I	CCNGG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	156, 228
TasI	AATT	2 cut(s)	52, 271
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	82, 286
Tsp45I	GTSAC	2 cut(s)	82, 286
TspDTI	ATGAA	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	2 cut(s)	156, 312
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.