Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

18735706 .. 18737568

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007588

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCGGGACTGTGCCGACGAAGCCGAATTCCGACGACCGGAAGCCCTCGCCGGCGGTCACGACCTCCACCGGCAAGCGCGTCATCATCAAGAGCGCCGATATGTTCCAGGACATGCAGAAGGAGGCCGTCGATATCGCCATCGGCGCATTTGAGACTCATAACGTAGAGAAGGACGTGGCGGAGCATATAAAGAAGGAGTTCGATTCGAGGCACGGACCTACTTGGCATTGCATCGTCGGTCGCAATTTCGGTTCATATGTGACTCATGAAACAAACCACTTTGTCTATTTCTACCTGGATCAGAAAGCAGTTTTGCTATTCAAATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

7.9

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	36 - 118	4.2e-38	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	80, 206
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	132, 321
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	3 cut(s)	105, 122, 173
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	30, 31
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	242
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	134, 323
BcnI	CCSGG	2 cut(s)	30, 31
BcoDI	GTCTC	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	123
Bme1390I	CCNGG	4 cut(s)	30, 31, 134, 323
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	4 cut(s)	30, 31, 134, 323
BmsI	GCATC	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	30, 31
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	134, 323
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	2 cut(s)	64, 268
BshFI	GGCC	1 cut(s)	152
BsiEI	CGRYCG	2 cut(s)	64, 268
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	30, 64, 77, 96
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	80, 206
BspANI	GGCC	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	292
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	134, 323
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	3 cut(s)	105, 122, 173
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	2 cut(s)	64, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 170
BstNI	CCWGG	2 cut(s)	134, 323
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	4 cut(s)	28, 29, 132, 321
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	78, 101
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	3 cut(s)	105, 122, 173
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr13I	GGNCC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	29
CseI	GACGC	2 cut(s)	20, 94
CviAII	CATG	2 cut(s)	139, 293
CviJI	RGCY	4 cut(s)	6, 49, 70, 152
CviKI_1	RGCY	4 cut(s)	6, 49, 70, 152
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	132, 321
EcoRV	GATATC	1 cut(s)	160
FaeI	CATG	2 cut(s)	142, 296
FaiI	YATR	8 cut(s)	128, 140, 186, 213, 215, 283, 285, 294
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	138, 292
FauNDI	CATATG	1 cut(s)	283
GlaI	GCGC	3 cut(s)	104, 121, 172
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	4 cut(s)	30, 64, 77, 96
HgaI	GACGC	2 cut(s)	20, 94
HhaI	GCGC	3 cut(s)	105, 122, 173
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	142, 296
Hin6I	GCGC	3 cut(s)	103, 120, 171
HinP1I	GCGC	3 cut(s)	103, 120, 171
HinfI	GANTC	3 cut(s)	181, 230, 289
HpaII	CCGG	4 cut(s)	30, 64, 77, 96
Hpy188I	TCNGA	2 cut(s)	58, 330
Hpy188III	TCNNGA	3 cut(s)	85, 115, 293
Hpy99I	CGWCG	4 cut(s)	46, 62, 158, 266
HpyAV	CCTTC	3 cut(s)	139, 190, 214
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	189, 201
HpyCH4V	TGCA	2 cut(s)	142, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 170
HpySE526I	ACGT	2 cut(s)	189, 201
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	142, 296
HspAI	GCGC	3 cut(s)	103, 120, 171
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	43, 77, 90, 109, 119, 146, 308, 335, 339
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	2 cut(s)	189, 201
MaeIII	GTNAC	2 cut(s)	82, 286
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MluCI	AATT	2 cut(s)	52, 271
MlyI	GAGTC	2 cut(s)	175, 283
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	82, 100, 142, 228
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	224
MspI	CCGG	4 cut(s)	30, 64, 77, 96
MspR9I	CCNGG	4 cut(s)	30, 31, 134, 323
MvaI	CCWGG	2 cut(s)	134, 323
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	46, 170
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	30, 31
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	1 cut(s)	325
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	142, 296
NmuCI	GTSAC	2 cut(s)	82, 286
NspI	RCATGY	1 cut(s)	142
PagI	TCATGA	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	2 cut(s)	175, 283
PpsI	GAGTC	2 cut(s)	175, 283
Psp6I	CCWGG	2 cut(s)	132, 321
PspGI	CCWGG	2 cut(s)	132, 321
PspPI	GGNCC	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	2 cut(s)	175, 283
ScrFI	CCNGG	4 cut(s)	30, 31, 134, 323
SetI	ASST	5 cut(s)	92, 192, 204, 247, 324
SfaNI	GCATC	1 cut(s)	267
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	242
SmaI	CCCGGG	1 cut(s)	31
Sse9I	AATT	2 cut(s)	52, 271
SsiI	CCGC	2 cut(s)	80, 206
StyD4I	CCNGG	4 cut(s)	28, 29, 132, 321
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	2 cut(s)	192, 204
TaqI	TCGA	3 cut(s)	156, 228, 233
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	52, 271
TfiI	GAWTC	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	82, 286
Tsp45I	GTSAC	2 cut(s)	82, 286
TspDTI	ATGAA	2 cut(s)	270, 309
TspGWI	ACGGA	1 cut(s)	255
TspMI	CCCGGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.