Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

71470598 .. 71472595

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG493300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCCGGACTGTGCGGACGAAGCCGAATTTTGACGAGCGGAAACCCTCGCCGGCTGTCACCACCTCCACCGGCCAGCGCCAACAATATCAAATGCATTTAGCTGAAATGGAAGCGGGTAGGGCAGGAATGCCTGTTGTCACTGTAAATCATGATCGTGGTGGCGGCTCAAATGTTAAGGATCTCCATCTGGAAGGCTTCAATGTTTTTGTGGTGGACGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

83

Amino Acids

9.18

Weight (kDa)

9.39

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	4 cut(s)	40, 64, 140, 189
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	244
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	76
BccI	CCATC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	31
BmgBI	CACGTC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	29
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse8I	GATNNNNATC	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	31, 77, 96
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	178, 205, 246
BspACI	CCGC	4 cut(s)	40, 64, 140, 189
BspANI	GGCC	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	175
BspPI	GGATC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	178, 205, 246
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	37, 169
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	181, 208, 249
BstMBI	GATC	3 cut(s)	178, 205, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 146
BstSCI	CCNGG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	78, 101
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	2 cut(s)	76, 95
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	7 cut(s)	6, 49, 80, 99, 128, 192, 222
CviKI_1	RGCY	7 cut(s)	6, 49, 80, 99, 128, 192, 222
DpnI	GATC	3 cut(s)	180, 207, 248
DpnII	GATC	3 cut(s)	178, 205, 246
EaeI	YGGCCR	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	1 cut(s)	179
FaiI	YATR	1 cut(s)	177
FatI	CATG	1 cut(s)	175
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	190
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	3 cut(s)	31, 77, 96
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	3 cut(s)	31, 77, 96
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	176, 215
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	37, 169
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 146
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	178, 205, 246
LpnPI	CCDG	7 cut(s)	44, 90, 109, 113, 135, 171, 200
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	82, 163
MalI	GATC	3 cut(s)	180, 207, 248
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	3 cut(s)	178, 205, 246
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	2 cut(s)	82, 100
Mph1103I	ATGCAT	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	3 cut(s)	31, 77, 96
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	46, 146
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	178, 205, 246
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	82, 163
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	175
PctI	GAATGC	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	3 cut(s)	178, 205, 246
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	3 cut(s)	92, 130, 246
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	4 cut(s)	40, 64, 140, 189
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	37, 169
TaiI	ACGT	1 cut(s)	246
TasI	AATT	1 cut(s)	52
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	82, 163
Tsp45I	GTSAC	2 cut(s)	82, 163
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.