Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

32061291 .. 32062751

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTGGATCGCGCTCTTACTTTACCACCTGACATTTTTGCGAAATTGTTAATGATCATCTGGGCCATATGGAAAAATCGTAACAATTTTTTATGGAATGGCACTGAGCAATCTGCTCAGGATATTCTATTAAGCAGCTTCACATGGTTGGATGAATTCCAGAAAGCCAGAAACACCAGTCAGCCATCTCCTGTTAAGCAACAAAGACAGCGATGGAAACCGGCTGATAATGGAGCCTTCAAGCTAAATGTAGATGCTGCATTCCTATCTAACCAAACCAGGGGTGGCCTTGGAGGAGTTTTACGCAATGCTTCTGGACAATTTGTCGCGGCTTTTGCTACACCTATTGCTCACACATGCAGCGCAATAGCGGAAGCCTTGTGCCCAGATCATTCCTTGCTTGCAAACGGAGGTCTTGTTGATGACATTAAGAGAGCTGTAAGAAATTTACCTTCAGTCCAAATCCAGCATGCACCACGTTCTTGTAATATGGTGGCCCATAGGCTTGCAGACTTCGCCGGAGCCGATCGCCGGATTCCGGTCACCGGCCACCGGAATCCGGTCACAGGCCGCCGCCCACCGGATTTTTTTGAAAACGTCTATTGCCCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

204

Amino Acids

22.64

Weight (kDa)

9.69

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	12, 329
AciI	CCGC	4 cut(s)	329, 371, 571, 574
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	155, 445
AcuI	CTGAAG	1 cut(s)	438
AfiI	CCNNNNNNNGG	8 cut(s)	280, 531, 538, 545, 552, 559, 566, 580
AgsI	TTSAA	2 cut(s)	241, 593
AhdI	GACNNNNNGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	3 cut(s)	138, 244, 437
AluI	AGCT	3 cut(s)	138, 244, 437
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	5 cut(s)	63, 286, 495, 547, 568
ApeKI	GCWGC	3 cut(s)	135, 257, 360
ApoI	RAATTY	2 cut(s)	155, 445
AspLEI	GCGC	2 cut(s)	14, 365
AspS9I	GGNCC	2 cut(s)	63, 496
AsuHPI	GGTGA	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	147, 244, 372
BccI	CCATC	2 cut(s)	193, 207
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	54
BisI	GCNGC	6 cut(s)	136, 258, 330, 361, 571, 574
BlsI	GCNGC	6 cut(s)	137, 259, 331, 362, 572, 575
Bme1390I	CCNGG	1 cut(s)	280
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	63, 496
BmiI	GGNNCC	2 cut(s)	235, 523
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	279, 289
BsaWI	WCCGGW	4 cut(s)	538, 552, 559, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	8 cut(s)	280, 531, 538, 545, 552, 559, 566, 580
Bse118I	RCCGGY	2 cut(s)	220, 545
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	279, 289
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	8 cut(s)	280, 531, 538, 545, 552, 559, 566, 580
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	96, 131
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	147, 244, 372
Bsh1236I	CGCG	2 cut(s)	12, 329
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	5 cut(s)	65, 288, 497, 549, 570
BsiEI	CGRYCG	1 cut(s)	529
BsiSI	CCGG	8 cut(s)	221, 519, 532, 539, 546, 553, 560, 581
BslI	CCNNNNNNNGG	8 cut(s)	280, 531, 538, 545, 552, 559, 566, 580
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	5 cut(s)	65, 288, 497, 549, 570
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	4 cut(s)	7, 54, 388, 526
BspACI	CCGC	4 cut(s)	329, 371, 571, 574
BspANI	GGCC	5 cut(s)	65, 288, 497, 549, 570
BspCNI	CTCAG	2 cut(s)	97, 130
BspFNI	CGCG	2 cut(s)	12, 329
BspLI	GGNNCC	2 cut(s)	235, 523
BspPI	GGATC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	2 cut(s)	220, 545
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	2 cut(s)	220, 545
BssECI	CCNNGG	2 cut(s)	279, 289
BssMI	GATC	4 cut(s)	7, 54, 388, 526
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	402, 471, 507
BstDEI	CTNAG	2 cut(s)	105, 117
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	2 cut(s)	12, 329
BstHHI	GCGC	2 cut(s)	14, 365
BstKTI	GATC	4 cut(s)	10, 57, 391, 529
BstMBI	GATC	4 cut(s)	7, 54, 388, 526
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 515
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	2 cut(s)	360, 473
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	2 cut(s)	12, 329
BstV1I	GCAGC	3 cut(s)	147, 244, 372
BsuRI	GGCC	5 cut(s)	65, 288, 497, 549, 570
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	402, 471, 507
CfoI	GCGC	2 cut(s)	14, 365
Cfr10I	RCCGGY	2 cut(s)	220, 545
Cfr13I	GGNCC	2 cut(s)	63, 496
CviAII	CATG	3 cut(s)	144, 357, 470
DdeI	CTNAG	2 cut(s)	105, 117
DpnI	GATC	4 cut(s)	9, 56, 390, 528
DpnII	GATC	4 cut(s)	7, 54, 388, 526
DriI	GACNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	547
Eam1105I	GACNNNNNGTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	3 cut(s)	147, 360, 473
FaiI	YATR	8 cut(s)	68, 70, 94, 145, 358, 471, 491, 501
FatI	CATG	3 cut(s)	143, 356, 469
FauNDI	CATATG	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	6 cut(s)	136, 258, 330, 361, 571, 574
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	6 cut(s)	136, 258, 330, 361, 571, 574
GlaI	GCGC	2 cut(s)	13, 364
GluI	GCNGC	6 cut(s)	136, 258, 330, 361, 571, 574
HaeIII	GGCC	5 cut(s)	65, 288, 497, 549, 570
HapII	CCGG	8 cut(s)	221, 519, 532, 539, 546, 553, 560, 581
HhaI	GCGC	2 cut(s)	14, 365
Hin1II	CATG	3 cut(s)	147, 360, 473
Hin6I	GCGC	2 cut(s)	12, 363
HinP1I	GCGC	2 cut(s)	12, 363
HinfI	GANTC	2 cut(s)	535, 556
HpaII	CCGG	8 cut(s)	221, 519, 532, 539, 546, 553, 560, 581
HphI	GGTGA	1 cut(s)	535
Hpy188III	TCNNGA	3 cut(s)	119, 160, 315
HpyAV	CCTTC	2 cut(s)	247, 462
HpyCH4IV	ACGT	2 cut(s)	478, 597
HpyCH4V	TGCA	5 cut(s)	260, 360, 404, 473, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 515
HpyF3I	CTNAG	2 cut(s)	105, 117
HpySE526I	ACGT	2 cut(s)	478, 597
Hsp92II	CATG	3 cut(s)	147, 360, 473
HspAI	GCGC	2 cut(s)	12, 363
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	7, 54, 388, 526
LmnI	GCTCC	2 cut(s)	233, 521
Lsp1109I	GCAGC	3 cut(s)	147, 244, 372
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	2 cut(s)	478, 597
MaeIII	GTNAC	3 cut(s)	80, 541, 562
MalI	GATC	4 cut(s)	9, 56, 390, 528
MboI	GATC	4 cut(s)	7, 54, 388, 526
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	5 cut(s)	44, 85, 155, 320, 445
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	287, 404
MseI	TTAA	4 cut(s)	50, 131, 195, 429
MspI	CCGG	8 cut(s)	221, 519, 532, 539, 546, 553, 560, 581
MspR9I	CCNGG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	2 cut(s)	12, 329
MwoI	GCNNNNNNNGC	2 cut(s)	335, 515
NdeI	CATATG	1 cut(s)	68
NdeII	GATC	4 cut(s)	7, 54, 388, 526
NlaIII	CATG	3 cut(s)	147, 360, 473
NlaIV	GGNNCC	2 cut(s)	235, 523
NmuCI	GTSAC	2 cut(s)	541, 562
NspI	RCATGY	2 cut(s)	360, 473
PaeI	GCATGC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	535, 556
PkrI	GCNGC	6 cut(s)	137, 259, 331, 362, 572, 575
Ple19I	CGATCG	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	235, 523
PspPI	GGNCC	2 cut(s)	63, 496
PvuI	CGATCG	1 cut(s)	529
SaqAI	TTAA	4 cut(s)	50, 131, 195, 429
SatI	GCNGC	6 cut(s)	136, 258, 330, 361, 571, 574
Sau3AI	GATC	4 cut(s)	7, 54, 388, 526
Sau96I	GGNCC	2 cut(s)	63, 496
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	9 cut(s)	31, 140, 246, 346, 415, 439, 454, 481, 600
SfaNI	GCATC	1 cut(s)	244
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	5 cut(s)	44, 85, 155, 320, 445
SsiI	CCGC	4 cut(s)	329, 371, 571, 574
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	2 cut(s)	481, 600
TasI	AATT	5 cut(s)	44, 85, 155, 320, 445
TauI	GCSGC	3 cut(s)	332, 573, 576
TfiI	GAWTC	2 cut(s)	535, 556
Tru1I	TTAA	4 cut(s)	50, 131, 195, 429
Tru9I	TTAA	4 cut(s)	50, 131, 195, 429
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	541, 562
TseI	GCWGC	3 cut(s)	135, 257, 360
Tsp45I	GTSAC	2 cut(s)	541, 562
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	2 cut(s)	155, 445
XceI	RCATGY	2 cut(s)	360, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.