Rroxscaffold_176G00431590

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0003537
Physical Location & Seq
Reverse (-)
1425849 .. 1427088
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431590.1

Sequence Viewer

Length: 231 bp
ATGGAAGCAGGAGACAGCAAAATGAGCCAAGACGCCAAGAGAAGAGTTCCCAGGACTGTGCCGACGAAGCTGAATTTCGACTACCGGAAACCCTCACCGGCTGTCACCACCTCCACCAGCAAGCACATCCAAGGCATGGAACCGAATATGCATTTTACCACTCCCTTTGAACAAGTTGATGCCATGTACAAAGAAGGAGCCCCCTGGTATGTAGTTGATCAGGGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

76

Amino Acids

8.63

Weight (kDa)

8.05

Isoelectric Point (pI)

67.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AcsI RAATTY 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 2 cut(s) 50, 203
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 6
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 87, 97
BanII GRGCYC 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 52, 205
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 52, 205
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 141, 199
BmrFI CCNGG 2 cut(s) 52, 205
BmsI GCATC 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 50, 130, 203
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 97
BseBI CCWGG 2 cut(s) 52, 205
BseDI CCNNGG 3 cut(s) 50, 130, 203
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 136
BshFI GGCC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 85, 98
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 6
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 1 cut(s) 217
BspANI GGCC 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 141, 199
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 50, 130, 203
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 52, 205
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 122
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 24, 67
BstNI CCWGG 2 cut(s) 52, 205
BstSCI CCNGG 2 cut(s) 50, 203
BstSFI CTRYAG 1 cut(s) 227
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 2 cut(s) 136, 184
CviJI RGCY 5 cut(s) 27, 70, 101, 200, 225
CviKI_1 RGCY 5 cut(s) 27, 70, 101, 200, 225
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 50, 203
EcoT14I CCWWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 139, 187
FaiI YATR 4 cut(s) 137, 149, 185, 210
FatI CATG 2 cut(s) 135, 183
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 85, 98
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 139, 187
HpaII CCGG 2 cut(s) 85, 98
HphI GGTGA 2 cut(s) 87, 97
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 67
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 139, 187
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 8 cut(s) 37, 64, 98, 111, 130, 190, 206, 217
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 73
MnlI CCTC 2 cut(s) 103, 121
Mph1103I ATGCAT 1 cut(s) 153
MspI CCGG 2 cut(s) 85, 98
MspR9I CCNGG 2 cut(s) 52, 205
MvaI CCWGG 2 cut(s) 52, 205
MwoI GCNNNNNNNGC 2 cut(s) 24, 67
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 139, 187
NlaIV GGNNCC 2 cut(s) 141, 199
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 50, 203
PspGI CCWGG 2 cut(s) 50, 203
PspN4I GGNNCC 2 cut(s) 141, 199
PspPI GGNCC 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 226
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 52, 205
SduI GDGCHC 1 cut(s) 202
SetI ASST 2 cut(s) 72, 113
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 50, 203
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 73
TatI WGTACW 1 cut(s) 186
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 136
XapI RAATTY 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.