Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

20151195 .. 20152929

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCTGGGACTGTGCCGACGAAGCCGAATTTCGACGAGCGGAAACCCTCGCCGGCTGTCACCGCCTCCACCGGCAAGCGCGGTCTTAGTTTCTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTAGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTCTTCATTTCACAATATAATGGACTGGCATTCTTTGGATGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

10.14

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	64, 87, 105
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	29
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	77, 96
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	193
BspACI	CCGC	3 cut(s)	64, 87, 105
BspFNI	CGCG	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	76, 95
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	29
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 86
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	78, 101
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	2 cut(s)	76, 95
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	4 cut(s)	6, 49, 80, 179
CviKI_1	RGCY	4 cut(s)	6, 49, 80, 179
DdeI	CTNAG	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	165
FaiI	YATR	2 cut(s)	163, 210
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	105
HapII	CCGG	2 cut(s)	77, 96
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	77, 96
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	122, 156
Hpy99I	CGWCG	2 cut(s)	46, 62
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 86
HpyF3I	CTNAG	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
LpnPI	CCDG	7 cut(s)	15, 42, 90, 109, 135, 199, 203
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	82, 139
MbiI	CCGCTC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	3 cut(s)	82, 100, 203
MroNI	GCCGGC	1 cut(s)	76
MspI	CCGG	2 cut(s)	77, 96
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	46, 86
NaeI	GCCGGC	1 cut(s)	78
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
SatI	GCNGC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	3 cut(s)	64, 87, 105
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	187
XapI	RAATTY	1 cut(s)	52
XbaI	TCTAGA	1 cut(s)	155
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.