Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

41539973 .. 41543158

Gene Structure 3186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCGGTACTGTGCCGACGAAGCCGAATTCCGACGACCGGAAGCCCTCGCCGGCGGTCACGACCTCCACCGGCAAGCGCGTCATCATCAAGAGCGCCGATATGTTCCAGGACATGCAGAAGGAGGCCGTCGAAATCGCCATCGGCGCATTTGAGACTCATAGCGTAGAGAAGGACGTGGCGGAGCATATAAAGAAGGAGTTCGATTCGAGGCACGGACCTACTTGGCATTGCATCGTCGGTCGCAATTTCGGTAACTCCTTCAATTTTCAGTTTCGTTTTTCTGGCCTGGTTTGCACTTATCTGGGTGTTTTGGTCAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

116

Amino Acids

12.93

Weight (kDa)

9.03

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	36 - 98	4.6e-24	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	80, 206
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	132, 312
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	150, 310
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	3 cut(s)	105, 122, 173
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	242
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	134, 314
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	30, 134, 314
Bme18I	GGWCC	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	30, 134, 314
BmsI	GCATC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	134, 314
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	2 cut(s)	64, 268
BshFI	GGCC	2 cut(s)	152, 312
BsiEI	CGRYCG	2 cut(s)	64, 268
BsiSI	CCGG	4 cut(s)	30, 64, 77, 96
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	152, 312
BspACI	CCGC	2 cut(s)	80, 206
BspANI	GGCC	2 cut(s)	152, 312
BspFNI	CGCG	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	134, 314
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	3 cut(s)	105, 122, 173
BstMAI	GTCTC	1 cut(s)	173
BstMCI	CGRYCG	2 cut(s)	64, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 170, 318
BstNI	CCWGG	2 cut(s)	134, 314
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	28, 132, 312
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	152, 312
BtrI	CACGTC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	78, 101
CfoI	GCGC	3 cut(s)	105, 122, 173
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	2 cut(s)	20, 94
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	5 cut(s)	6, 49, 70, 152, 312
CviKI_1	RGCY	5 cut(s)	6, 49, 70, 152, 312
CviQI	GTAC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	132, 312
FaeI	CATG	1 cut(s)	142
FaiI	YATR	5 cut(s)	128, 140, 186, 213, 215
FatI	CATG	1 cut(s)	138
GlaI	GCGC	3 cut(s)	104, 121, 172
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	152, 312
HapII	CCGG	4 cut(s)	30, 64, 77, 96
HgaI	GACGC	2 cut(s)	20, 94
HhaI	GCGC	3 cut(s)	105, 122, 173
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	3 cut(s)	103, 120, 171
HinP1I	GCGC	3 cut(s)	103, 120, 171
HinfI	GANTC	2 cut(s)	181, 230
HpaII	CCGG	4 cut(s)	30, 64, 77, 96
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	3 cut(s)	85, 115, 343
Hpy99I	CGWCG	4 cut(s)	46, 62, 158, 266
HpyAV	CCTTC	4 cut(s)	139, 190, 214, 295
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	142, 258, 321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 170, 318
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	3 cut(s)	103, 120, 171
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	208
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	82, 278
MluCI	AATT	3 cut(s)	52, 271, 289
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	82, 100, 142, 228
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	224
MspI	CCGG	4 cut(s)	30, 64, 77, 96
MspR9I	CCNGG	3 cut(s)	30, 134, 314
MvaI	CCWGG	2 cut(s)	134, 314
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	46, 170, 318
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	30
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	142
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	132, 312
PspGI	CCWGG	2 cut(s)	132, 312
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	3 cut(s)	30, 134, 314
SetI	ASST	3 cut(s)	92, 204, 247
SfaNI	GCATC	1 cut(s)	267
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	3 cut(s)	52, 271, 289
SsiI	CCGC	2 cut(s)	80, 206
StyD4I	CCNGG	3 cut(s)	28, 132, 312
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	156, 228, 233
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	52, 271, 289
TfiI	GAWTC	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.