Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

32846623 .. 32847328

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG319600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGCGGGTAGGGCAGGATTGCCTGTTGTCACTATAAATCATGATGGTGGTGGCGGCTCAAATGTCAAGGATCTCCATCTGGAAGGCTTCAATGTTTCTGTGGGTGGACGTGATCTAATTATGGATGGTGCAGTAACACTTGGCATTATGGACTTATTGGAAGAAATGGTACTGGAAAAACAACGTTTCTTAGGCACTTGGCTATGCATGCCATTGATAGCATTCGCCAAGTATTGCATGTGGAGCAAGAAGTGGCAGGTGATGATACACCAGCGTTGCAATGTGTTTTTAAAACTGATATTGAAAGAACCCAGCTTTTGGAAGAAGAAGATCGTCTCCTTGCTCAACAAGTTGAATTCTTATTTACTCATAGAGAACTGGAGCTGGAGAAAGAAGCGGGAAAGAGCAATGGAGAAATTGACAAAGATGCCATCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

147

Amino Acids

16.91

Weight (kDa)

9.45

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	3 cut(s)	8, 57, 400
AclI	AACGTT	1 cut(s)	187
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	94, 307, 358
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	2 cut(s)	318, 387
AluI	AGCT	2 cut(s)	318, 387
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	274
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BccI	CCATC	4 cut(s)	41, 87, 122, 442
BcoDI	GTCTC	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	113
BmsI	GCATC	1 cut(s)	420
BpmI	CTGGAG	2 cut(s)	403, 409
BsaBI	GATNNNNATC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	180, 386
Bse3DI	GCAATG	2 cut(s)	289, 417
Bse8I	GATNNNNATC	1 cut(s)	78
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	2 cut(s)	289, 417
BseNI	ACTGG	2 cut(s)	180, 386
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	343
BsmBI	CGTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	73, 115, 333
BspACI	CCGC	3 cut(s)	8, 57, 400
BspHI	TCATGA	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	289, 417
BsrI	ACTGG	2 cut(s)	180, 386
BssMI	GATC	3 cut(s)	73, 115, 333
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	3 cut(s)	76, 118, 336
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	73, 115, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 211, 246
BstNSI	RCATGY	2 cut(s)	214, 244
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	212
CciI	TCATGA	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	3 cut(s)	44, 211, 241
CviJI	RGCY	5 cut(s)	60, 90, 205, 318, 387
CviKI_1	RGCY	5 cut(s)	60, 90, 205, 318, 387
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	3 cut(s)	75, 117, 335
DpnII	GATC	3 cut(s)	73, 115, 333
DraI	TTTAAA	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	3 cut(s)	47, 214, 244
FaiI	YATR	8 cut(s)	38, 45, 125, 152, 208, 212, 242, 374
FatI	CATG	3 cut(s)	43, 210, 240
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	2 cut(s)	403, 409
Hin1II	CATG	3 cut(s)	47, 214, 244
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	2 cut(s)	44, 83
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	112, 187
HpyCH4V	TGCA	4 cut(s)	134, 210, 240, 282
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 211, 246
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	2 cut(s)	112, 187
Hsp92II	CATG	3 cut(s)	47, 214, 244
Kzo9I	GATC	3 cut(s)	73, 115, 333
LmnI	GCTCC	2 cut(s)	246, 384
LpnPI	CCDG	9 cut(s)	3, 39, 68, 161, 245, 287, 328, 367, 373
LweI	GCATC	1 cut(s)	420
MaeII	ACGT	2 cut(s)	112, 187
MaeIII	GTNAC	2 cut(s)	31, 136
MalI	GATC	3 cut(s)	75, 117, 335
MboI	GATC	3 cut(s)	73, 115, 333
MboII	GAAGA	4 cut(s)	176, 337, 340, 343
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	120, 358, 419
Mph1103I	ATGCAT	1 cut(s)	212
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	14, 211, 246
NdeII	GATC	3 cut(s)	73, 115, 333
NlaIII	CATG	3 cut(s)	47, 214, 244
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	212
NspI	RCATGY	2 cut(s)	214, 244
PaeI	GCATGC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	59
Psp1406I	AACGTT	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	3 cut(s)	73, 115, 333
SetI	ASST	5 cut(s)	115, 190, 264, 320, 389
SfaNI	GCATC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	3 cut(s)	120, 358, 419
SsiI	CCGC	3 cut(s)	8, 57, 400
TaiI	ACGT	2 cut(s)	115, 190
TasI	AATT	3 cut(s)	120, 358, 419
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	321
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	2 cut(s)	214, 244
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.